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di xingxu watchlist [423 articles]

Gli articoli piu' recenti che soddisfano i criteri di watchlist di di xingxu
  • A genome-wide approach to identifying novel-imprinted genes.
    Hum Genet, Vol. 122, No. 6. (January 2008), pp. 625-634.
    by KS Pollard, D Serre, X Wang, H Tao, E Grundberg, TJ Hudson, AG Clark, K Frazer
    posted to rockman_journal_club method expression array allele-specific by dpollard on 2008-06-27 21:03:45 as ***** along with 2 people and 1 group gjuggler nolodie RockmanLab
  • Genome-wide allele-specific expression analysis using Massively Parallel Signature Sequencing (MPSS) reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue.
    Plant molecular biology, Vol. 66, No. 5. (March 2008), pp. 551-563.
    by M Guo, S Yang, M Rupe, B Hu, DR Bickel, L Arthur, O Smith
    posted to rockman_journal_club method massively_parallel_signature_sequencing expression allele-specific by dpollard on 2008-06-27 21:00:03 as ***** along with 1 group RockmanLab
  • Allele-Specific KRT1 Expression Is a Complex Trait
    PLoS Genetics, Vol. 2, No. 6. (1 June 2006), e93.
    by Heng Tao, David R Cox, Kelly A Frazer
    posted to expression complex_trait allele-specific by dpollard on 2008-06-27 20:56:07 as ** along with 4 people and 1 group ccots RMGraze emarker mimulus_99 RockmanLab
  • Analysis of allelic differential expression in human white blood cells
    Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 331-339.
    by Krishna PV Pant, Heng Tao, Erica J Beilharz, Dennis G Ballinger, David R Cox, Kelly A Frazer
    posted to rockman_journal_club method expression array allele-specific by dpollard on 2008-06-27 20:54:12 as ***** along with 4 people and 1 group RMGraze qfwills emarker mimulus_99 RockmanLab
  • SNP-specific array-based allele-specific expression analysis.
    Genome Res (27 March 2008)
    by Hans T T Bjornsson, Thomas J J Albert, Christine M M Ladd-Acosta, Roland D D Green, Michael A A Rongione, Christina M M Middle, Rafael A A Irizarry, Karl W W Broman, Andrew P P Feinberg
    posted to rockman_journal_club method expression array allele-specific by dpollard on 2008-06-27 20:50:13 as ***** along with 1 person and 1 group rschulz RockmanLab
  • Allelic Variation in Gene Expression Is Common in the Human Genome
    Genome Res., Vol. 13, No. 8. (1 August 2003), pp. 1855-1862.
    by Shuen H Lo, Zhining Wang, Ying Hu, Howard H Yang, Sheryl Gere, Kenneth H Buetow, Maxwell P Lee
    posted to rockman_journal_club method expression allele-specific affy_array by dpollard on 2008-06-27 20:44:16 as ***** along with 4 people and 1 group RMGraze qfwills emarker mimulus_99 RockmanLab
  • Allele-Specific Chromatin Immunoprecipitation Studies Show Genetic Influence on Chromatin State in Human Genome
    PLoS Genetics, Vol. 3, No. 5. (1 May 2007), e81.
    by Mitsutaka Kadota, Howard H Yang, Nan Hu, Chaoyu Wang, Ying Hu, Philip R Taylor, Kenneth H Buetow, Maxwell P Lee
    posted to method chip_chip allele-specific by dpollard on 2008-06-27 20:41:19 as ** along with 1 group RockmanLab
  • Differential Allelic Expression in the Human Genome: A Robust Approach To Identify Genetic and Epigenetic Cis-Acting Mechanisms Regulating Gene Expression
    PLoS Genet, Vol. 4, No. 2. (29 February 2008), e1000006.
    by David Serre, Scott Gurd, Bing Ge, Robert Sladek, Donna Sinnett, Eef Harmsen, Marina Bibikova, Eugene Chudin, David L Barker, Todd Dickinson, Jian-Bing Fan, Thomas J Hudson
    posted to rockman_journal_club method illumina_beads expression allele-specific by dpollard on 2008-06-27 20:36:21 as ***** along with 1 person and 2 groups vplagnol RockmanLab cis-regulatory-evolution
  • DEPS-1 promotes P-granule assembly and RNA interference in C. elegans germ cells.
    Development (Cambridge, England), Vol. 135, No. 5. (March 2008), pp. 983-993.
    by CA Spike, J Bader, V Reinke, S Strome
    posted to small_rnas rnai germline c_elegans by dpollard on 2008-06-02 21:42:42 as ** along with 1 group RockmanLab
  • Molecular biology. Amplified silencing.
    Science, Vol. 315, No. 5809. (12 January 2007), pp. 199-200.
    by DC Baulcombe
    posted to small_rnas rnai review c_elegans by dpollard on 2008-06-02 21:20:12 as ** along with 1 person and 1 group tardigrade RockmanLab
  • Distinct populations of primary and secondary effectors during RNAi in C. elegans.
    Science, Vol. 315, No. 5809. (12 January 2007), pp. 241-244.
    by J Pak, A Fire
    posted to small_rnas rnai c_elegans by dpollard on 2008-06-02 21:17:39 as ** along with 1 person and 1 group tardigrade RockmanLab
  • Analysis of the C. elegans Argonaute family reveals that distinct Argonautes act sequentially during RNAi.
    Cell, Vol. 127, No. 4. (17 November 2006), pp. 747-757.
    by E Yigit, PJ Batista, Y Bei, KM Pang, CC Chen, NH Tolia, L Joshua-Tor, S Mitani, MJ Simard, CC Mello
    posted to small_rnas rnai c_elegans argonaute by dpollard on 2008-06-02 21:04:24 as ** along with 2 people and 1 group jonsta247 tardigrade RockmanLab
  • RNAi protects the Caenorhabditis elegans germline against transposition
    Trends in Genetics, Vol. 20, No. 7. (July 2004), pp. 314-319.
    by Nadine L Vastenhouw, Ronald H Plasterk
    posted to small_rnas rnai review germline c_elegans by dpollard on 2008-06-02 15:48:48 as ** along with 1 group RockmanLab
  • RNAi: the nuts and bolts of the RISC machine.
    Cell, Vol. 122, No. 1. (15 July 2005), pp. 17-20.
    by W Filipowicz
    posted to small_rnas rnai review by dpollard on 2008-06-02 15:43:11 as ** along with 2 people and 1 group ttjoseph Hosna RockmanLab
  • RNAi mechanisms in Caenorhabditis elegans.
    FEBS letters, Vol. 579, No. 26. (31 October 2005), pp. 5932-5939.
    by A Grishok
    posted to small_rnas rnai c_elegans by dpollard on 2008-06-02 15:42:17 as ** along with 1 person and 1 group jiny RockmanLab
  • piRNAs--the ancient hunters of genome invaders.
    Genes Dev, Vol. 21, No. 14. (15 July 2007), pp. 1707-1713.
    by JV Hartig, Y Tomari, K Förstemann
    posted to small_rnas by dpollard on 2008-06-02 15:41:39 as ** along with 5 people and 1 group balicea zhanghuiqiong sebastien_vigneau N0131826 cabbagezs RockmanLab
  • Argonautes confront new small RNAs.
    Curr Opin Chem Biol, Vol. 11, No. 5. (October 2007), pp. 569-577.
    by CR Faehnle, L Joshua-Tor
    posted to rnai review argonaute by dpollard on 2008-06-02 15:40:29 as ** along with 2 people and 1 group zhanghuiqiong alwinpremanand RockmanLab
  • Functional Proteomics Reveals the Biochemical Niche of C. elegans DCR-1 in Multiple Small-RNA-Mediated Pathways.
    Cell, Vol. 124, No. 2. (27 January 2006), pp. 343-354.
    by TF Duchaine, JA Wohlschlegel, S Kennedy, Y Bei, D Conte, K Pang, DR Brownell, S Harding, S Mitani, G Ruvkun, JR Yates, CC Mello
    posted to rnai c_elegans by dpollard on 2008-05-29 05:08:30 as ** along with 1 person and 1 group lhonigberg RockmanLab
  • PPW-1, a PAZ/PIWI protein required for efficient germline RNAi, is defective in a natural isolate of C. elegans.
    Curr Biol, Vol. 12, No. 17. (3 September 2002), pp. 1535-1540.
    by M Tijsterman, KL Okihara, K Thijssen, RH Plasterk
    posted to worms rockman_journal_club rnai natural_variation c_elegans by dpollard on 2008-05-29 00:22:53 as ***** along with 1 person and 1 group tardigrade RockmanLab
  • The End of Poverty: Economic Possibilities for Our Time
    (28 February 2006)
    by Jeffrey Sachs
    posted to no-tag by dpollard on 2008-05-23 20:35:39 as **
  • Common Wealth: Economics for a Crowded Planet
    (18 March 2008)
    by Jeffrey D Sachs
    posted to no-tag by dpollard on 2008-05-23 18:45:48 as **
  • Molecular-marker-facilitated investigations of quantitative-trait loci in maize. I. Numbers, genomic distribution and types of gene action.
    Genetics, Vol. 116, No. 1. (May 1987), pp. 113-125.
    by MD Edwards, CW Stuber, JF Wendel
    posted to trait_covariance seminal_paper rockman_journal_club qtl epistasis dominance by dpollard on 2008-05-22 23:07:55 as read along with 1 group RockmanLab
  • A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
    Genome Res. (13 May 2008), gr.076463.108.
    by Anton Valouev, Jeffrey Ichikawa, Thaisan Tonthat, Jeremy Stuart, Swati Ranade, Heather Peckham, Kathy Zeng, Joel A Malek, Gina Costa, Kevin Mckernan, Arend Sidow, Andrew Fire, Steven M Johnson
    posted to worms sequence_specificity nucleosome c_elegans by dpollard on 2008-05-22 21:40:53 as ** along with 5 people and 1 group caseybrown vega aalibes Stew maximilianh RockmanLab
  • Mapping mendelian factors underlying quantitative traits using RFLP linkage maps.
    Genetics, Vol. 121, No. 1. (January 1989), pp. 185-199.
    by ES Lander, D Botstein
    posted to seminal_paper rockman_journal_club qtl interval_mapping by dpollard on 2008-05-22 21:34:29 as ***** along with 4 people and 1 group Ayest raiyar lp2 mcgannd RockmanLab
  • Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
    Genome Res. (7 November 2007), gr.6691007.
    by Peter Andolfatto
    posted to drosophila hitchhiking positive_selection by dpollard on 2008-02-13 06:38:24 as *** along with 3 people and 1 group djkt usagi-kirin mimulus_99 EisenLab
  • Multi-scale correlations in continuous genomic data.
    Pac Symp Biocomput (2008), pp. 201-215.
    by RE Thurman, WS Noble, JA Stamatoyannopoulos
    posted to correlation histone hypersensitive nucleosome by dpollard on 2008-02-01 07:05:30 as ** along with 2 people and 1 group jyuh operon EisenLab
  • Using DNA duplex stability information for transcription factor binding site discovery.
    Pac Symp Biocomput (2008), pp. 453-464.
    by R Gordân, AJ Hartemink
    posted to binding_site biophysical_model method motif_detection prediction transcription_factor by dpollard on 2008-02-01 06:21:41 as ** along with 1 person and 1 group bootsy EisenLab
  • Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast.
    Pac Symp Biocomput (2008), pp. 489-500.
    by RW Lusk, MB Eisen
    posted to affinity binding_site transcription_factor variation yeast by dpollard on 2008-02-01 06:19:08 as read along with 1 person and 2 groups maximilianh EisenLab cis-regulatory-evolution
  • Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
    posted to alignment alignment_accuracy by dpollard on 2008-02-01 06:16:50 as *** along with 23 people and 2 groups pradiptaray jdelcampo timflutre gracio adacier jyuh bpb aprasad dayjm tny djkt cjeans zwang lisa1 cactus biomcgary lilou kinestetika dandaman gjuggler renatomilani mclarenv youdon EisenLab microbiology_nijmegen
  • The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses.
    Pac Symp Biocomput (2008), pp. 25-36.
    by S Nelesen, K Liu, D Zhao, CR Linder, T Warnow
    posted to accuracy alignment alignment_accuracy method multiple_alignment phylogeny reconstruction by dpollard on 2008-02-01 06:14:51 as ** along with 1 group EisenLab
  • Multiple RTK pathways downregulate Groucho-mediated repression in Drosophila embryogenesis.
    Development (23 January 2008)
    by Einat Cinnamon, Aharon Helman, Rachel Ben-Haroush Schyr, Amir Orian, Gerardo Jiménez, Ze'ev Paroush
    posted to post_transcriptional_modification repression by dpollard on 2008-02-01 06:09:59 as ** along with 1 group EisenLab
  • Delimiting the conserved features of hunchback function for the trunk organization of insects.
    Development (23 January 2008)
    by Henrique Marques-Souza, Manuel Aranda, Diethard Tautz
    posted to drosophila expression_pattern gene_function_evolution insects pattern targets transcription_factor tribolium by dpollard on 2008-02-01 06:06:53 as ** along with 1 group EisenLab
  • Inferring genome-scale rearrangement phylogeny and ancestral gene order: A Drosophila case study
    Genome Biology, Vol. 8 (08 November 2007), R236.
    by Arjun Bhutkar, William M Gelbart, Temple F Smith
    posted to drosophila phylogeny by dpollard on 2008-01-11 18:06:11 as *** along with 4 people and 1 group indigoviolet balicea maximilianh hpaces EisenLab
  • Contrasting the Efficacy of Selection on the X and Autosomes in Drosophila.
    Mol Biol Evol (13 December 2007)
    by Nadia D D Singh, Amanda M M Larracuente, Andrew G G Clark
    posted to drosophila selection x_vs_autosomes by dpollard on 2008-01-11 18:03:53 as **** along with 1 group EisenLab
  • Characterization of the Duffy gene promoter: evidence for tissue-specific abolishment of expression in Fy(a-b-) of black individuals.
    Biochem Biophys Res Commun, Vol. 222, No. 3. (24 May 1996), pp. 852-859.
    by S Iwamoto, J Li, N Sugimoto, H Okuda, E Kajii
    posted to cis_regulatory_elements expression_divergence expression_pattern expression_polymorphism human modularity regulatory_evolution regulatory_sequence_evolution by dpollard on 2007-12-05 23:03:10 as *** along with 2 groups EisenLab cis-regulatory-evolution
  • Evolutionary changes in cis and trans gene regulation
    Nature, Vol. 430, No. 6995. (1 July 2004), pp. 85-88.
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
    posted to cis_vs_trans drosophila expression_divergence expression_polymorphism hybrid regulatory_evolution regulatory_polymorphism by dpollard on 2007-12-05 22:58:32 as read along with 8 people and 2 groups lyongu balicea tabu adepace emmahe emarker mimulus_99 cisevol EisenLab cis-regulatory-evolution
  • Ancient and Recent Positive Selection Transformed Opioid cis-Regulation in Humans.
    PLoS Biol, Vol. 3, No. 12. (15 November 2005)
    by Matthew V V Rockman, Matthew W W Hahn, Nicole Soranzo, Fritz Zimprich, David B B Goldstein, Gregory A A Wray
    posted to binding_site cis_regulatory_elements human regulatory_evolution regulatory_polymorphism regulatory_sequence_evolution turnover by dpollard on 2007-12-05 22:55:41 as read along with 8 people and 3 groups jphekman imouthesmp indigoviolet Archaeogenetics happy_manatee djkt mgaldzic cisevol EisenLab CHIP cis-regulatory-evolution
  • Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus.
    Am J Hum Genet, Vol. 66, No. 5. (May 2000), pp. 1669-1679.
    by MT Hamblin, A Di Rienzo
    posted to binding_site cis_regulatory_elements regulatory_evolution regulatory_polymorphism regulatory_sequence_evolution turnover by dpollard on 2007-12-05 22:53:19 as *** along with 2 groups EisenLab cis-regulatory-evolution
  • Disruption of a GATA motif in the Duffy gene promoter abolishes erythroid gene expression in Duffy-negative individuals.
    Nat Genet, Vol. 10, No. 2. (June 1995), pp. 224-228.
    by C Tournamille, Y Colin, JP Cartron, C Le Van Kim
    posted to binding_site cis_regulatory_elements regulatory_evolution regulatory_polymorphism regulatory_sequence_evolution turnover by dpollard on 2007-12-05 22:51:01 as *** along with 2 groups EisenLab cis-regulatory-evolution
  • Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila.
    Nature, Vol. 433, No. 7025. (3 February 2005), pp. 481-487.
    by N Gompel, B Prud'homme, PJ Wittkopp, VA Kassner, SB Carroll
    posted to binding_site cis_regulatory_elements drosophila pigmentation regulatory_evolution regulatory_sequence_evolution turnover by dpollard on 2007-12-05 22:48:37 as read along with 5 people and 2 groups pradiptaray emilyhare adepace cisevol emptyhb EisenLab cis-regulatory-evolution
  • CisModule: de novo discovery of cis-regulatory modules by hierarchical mixture modeling.
    Proc Natl Acad Sci U S A, Vol. 101, No. 33. (17 August 2004), pp. 12114-12119.
    by Q Zhou, WH Wong
    posted to ab_initio cis_regulatory_elements clustering method prediction by dpollard on 2007-12-05 22:46:33 as read along with 2 people and 1 group ep161302 indigoviolet EisenLab
  • Regulation of Body Pigmentation by the Abdominal-B Hox Protein and Its Gain and Loss in Drosophila Evolution
    Cell, Vol. 125, No. 7. (30 June 2006), pp. 1387-1399.
    by Sangyun Jeong, Antonis Rokas, Sean B Carroll
    posted to binding_site cis_regulatory_elements pigmentation regulatory_evolution regulatory_sequence_evolution turnover by dpollard on 2007-12-05 22:44:47 as read along with 1 person and 2 groups emilyhare EisenLab cis-regulatory-evolution
  • Quantitative models of developmental pattern formation.
    Dev Cell, Vol. 11, No. 3. (September 2006), pp. 289-300.
    by GT Reeves, CB Muratov, T Schüpbach, SY Shvartsman
    posted to expression_pattern modeling pattern review by dpollard on 2007-12-05 21:05:56 as read along with 1 person and 1 group brant EisenLab
  • Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo.
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (22 January 2002), pp. 763-768.
    by M Markstein, P Markstein, V Markstein, MS Levine
    posted to cis_regulatory_elements clustering drosophila embryonic_patterning method prediction by dpollard on 2007-12-05 20:41:26 as read along with 1 person and 1 group indigoviolet EisenLab
  • Transcriptional regulation of a pair-rule stripe in Drosophila.
    Genes Dev, Vol. 5, No. 5. (May 1991), pp. 827-839.
    by S Small, R Kraut, T Hoey, R Warrior, M Levine
    posted to drosophila embryonic_patterning grammar repression seminal_paper by dpollard on 2007-12-05 19:31:27 as ** along with 1 person and 1 group lusk EisenLab
  • Transcriptional regulatory code of a eukaryotic genome
    Nature, Vol. 431, No. 7004. (2004), pp. 99-104.
    by Christopher T Harbison, Benjamin D Gordon, Tong I Lee, Nicola J Rinaldi, Kenzie D Macisaac, Timothy W Danford, Nancy M Hannett, Jean-Bosco Tagne, David B Reynolds, Jane Yoo, Ezra G Jennings, Julia Zeitlinger, Dmitry K Pokholok, Manolis Kellis, Alex P Rolfe, Ken T Takusagawa, Eric S Lander, David K Gifford, Ernest Fraenkel, Richard A Young
    posted to chip_chip cis_regulatory_elements yeast by dpollard on 2007-12-04 00:29:15 as read along with 22 people and 8 groups kristallreiner mariakmejia brant alokm tuck chad_davis lyongu kaspermunch balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee cisevol njcitulike xili03 Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
  • Dominant gain-of-function mutations that lead to misregulation of the C. elegans heterochronic gene lin-14, and the evolutionary implications of dominant mutations in pattern-formation genes.
    Dev Suppl, Vol. 1 (1991), pp. 47-54.
    by G Ruvkun, B Wightman, T Bürglin, P Arasu
    posted to cis_regulatory_elements co_dominance dominance nematode semi_dominance seminal_paper by dpollard on 2007-11-26 00:38:21 as *** along with 1 group EisenLab
  • Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter.
    Proc Natl Acad Sci U S A, Vol. 72, No. 3. (March 1975), pp. 784-788.
    by D Pribnow
    posted to binding_site cis_regulatory_elements conservation seminal_paper by dpollard on 2007-11-26 00:28:07 as read along with 1 group EisenLab
  • Accounting for Bias from Sequencing Error in Population Genetic Estimates.
    Mol Biol Evol (2 November 2007)
    by Philip L F L Johnson, Montgomery Slatkin
    posted to parameter_estimation polymorphism population_genetics sequencing_error by dpollard on 2007-11-25 05:46:42 as *** along with 2 people and 1 group bpb jmeppley EisenLab
  • Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes
    Genome Res. (7 November 2007), gr.7105007.
    by Matthew D Rasmussen, Manolis Kellis
    posted to drosophila method phylogeny prediction yeast by dpollard on 2007-11-21 02:56:16 as read along with 2 people and 1 group stajich caseybrown EisenLab
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