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di vlachmore bionlp [66 articles]

Articoli aggiunti di recente alla biblioteca di vlachmore classificati sotto il tag bionlp. You can also see everyone's bionlp.
  • Comparative analysis of five protein-protein interaction corpora
    BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008)
    by Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Bjorne, Filip Ginter, Tapio Salakoski
  • Normalizing biomedical terms by minimizing ambiguity and variability
    BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008)
    by Yoshimasa Tsuruoka, John Mcnaught, Sophia Ananiadou
    posted to rules normalization gene bionlp by vlachmore on 2008-05-09 15:33:01 as ** along with 1 person dullhunk
  • BANNER: an executable survey of advances in biomedical named entity recognition.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 652-663.
    posted to recognition ner named name gene entity crf bionlp by vlachmore on 2008-05-09 14:25:32 as **
  • Natural Language Processing in aid of FlyBase curators
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Nikiforos Karamanis, Ruth Seal, Ian Lewin, Peter Mcquilton, Andreas Vlachos, Caroline Gasperin, Rachel Drysdale, Ted Briscoe
    posted to bionlp curation flyslip by vlachmore on 2008-04-15 12:11:24 as ** along with 1 person hpiwowar
  • Constructing biological knowledge-bases by extracting information from text sources
    (1999), pp. 77-86.
    by M Craven, J Kumlien
    posted to bionlp by vlachmore on 2008-04-07 16:36:29 as ** along with 1 person and 1 group bundschu generif_paper
  • Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach
    Artif. Intell. Med., Vol. 39, No. 2. (February 2007), pp. 127-136.
    by Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Christos Andronis, Ourania Konstandi, Andreas Persidis
    posted to bionlp extraction relation by vlachmore on 2008-01-23 18:00:12 as **
  • Corpus annotation for mining biomedical events from literature
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jin D Kim, Tomoko Ohta, Jun'ichi Tsujii
  • Me and my friends: gene mention normalization with background knowledge
    by Jörg Hakenberg, Loic Royer, Conrad Plake, Hendrik Strobelt, Michael Schroeder
    posted to bionlp context gene normalization ranking by vlachmore on 2007-12-19 13:48:49 as *****
  • Human gene name normalization using text matching with automatically extracted synonym dictionaries
    (2006), pp. 41-48.
    by Haw-Ren Fang, Kevin Murphy, Yang Jin, Jessica Kim, Peter White
    posted to bionlp gene name normalization by vlachmore on 2007-12-17 18:34:31 as read
  • A Graph-Search Framework for GeneId Ranking (Extended Abstract)
    (2006)
    by William W Cohen
    posted to bionlp gene graph normalization by vlachmore on 2007-12-17 18:31:57 as **
  • A graph-search framework for associating gene identifiers with documents
    BMC Bioinformatics, Vol. 7 (10 October 2006), 440.
    by William W Cohen, Einat Minkov
    posted to algorithm bionlp gene graph normalization by vlachmore on 2007-12-17 18:23:17 as ****
  • Use of support vector machines in extended named entity recognition
    (2002)
    posted to bionlp entity machines named recognition shared support svms task vector by vlachmore on 2007-12-17 18:08:15 as **
  • Introduction to the bioentity recognition task at JNLPBA
    (2004)
    by Jin D Kim, Tomoko Ohta, Yoshimasa Tsuruoka, Yuka Tateisi, Nigel Collier
  • Exploiting Context for Biomedical Entity Recognition: From Syntax to the Web
    (2004)
    by J Finkel, Sh Dingare, H Nguyen, M Nissim, G Sinclair, Ch Manning
  • Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2049-2058.
  • BioIE: extracting informative sentences from the biomedical literature.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2138-2139.
    by A Divoli, TK Attwood
    posted to bionlp by vlachmore on 2007-12-17 18:00:26 as ** along with 2 people and 1 group irenas dullhunk dbk-lab
  • Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction.
    Bioinformatics (25 November 2004)
    by Carlos Santos, Daniela Eggle, David J J States
  • Gene clustering by Latent Semantic Indexing of MEDLINE abstracts
    Bioinformatics, Vol. 21, No. 1., 104.
    by Ramin Homayouni, Kevin Heinrich, Lai Wei, Michael W Berry
  • The Language of Bioscience: Facts, Speculations, and Statements in Between.
    (2004)
    by Marc Light, Xin Y Qiu, Padmini Srinivasan
  • MedPost: a part-of-speech tagger for bioMedical text.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2320-2321.
    by L Smith, T Rindflesch, WJ Wilbur
  • Weakly Supervised Learning Methods for Improving the Quality of Gene Name Normalization Data
    (2005)
    by Ben Wellner
    posted to bionlp gene normalization semi-supervised by vlachmore on 2007-12-17 17:51:03 as **
  • Enhancing HMM-based biomedical named entity recognition by studying special phenomena.
    J Biomed Inform, Vol. 37, No. 6. (December 2004), pp. 411-422.
    by J Zhang, D Shen, G Zhou, J Su, CL Tan
  • A flexible measure of contextual similarity for biomedical terms.
    Pac Symp Biocomput (2005), pp. 197-208.
  • Protein name tagging guidelines: lessons learned: Conference Papers
    Comp. Funct. Genomics, Vol. 6, No. 1-2. (2005), pp. 72-76.
    by Inderjeet Mani, Zhangzhi Hu, Seok B Jang, Ken Samuel, Matthew Krause, Jon Phillips, Cathy H Wu
    posted to bionlp guidelines by vlachmore on 2007-12-17 17:41:40 as **
  • Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
  • Tagging gene and protein names in full text articles
    (2002), pp. 9-13.
    by Lorraine Tanabe, John W Wilbur
    posted to bionlp entity named recognition by vlachmore on 2007-12-17 17:35:05 as **
  • CONAN: An Integrative System for Biomedical Literature Mining
    Progress in Artificial Intelligence (2005), pp. 248-259.
    by Rainer Malik, Arno Siebes
    posted to bionlp by vlachmore on 2007-12-17 17:33:10 as read
  • Rutabaga by any other name: extracting biological names
    Journal of Biomedical Informatics, Vol. 35, No. 4. (August 2002), pp. 247-259.
    by Lynette Hirschman, Alexander A Morgan, Alexander S Yeh
    posted to bionlp bootstrapping entity named ner recognition by vlachmore on 2007-12-17 17:31:51 as **
  • GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data
    by Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo A Duboue, Wubin Weng, Et
    posted to bionlp geneways by vlachmore on 2007-12-17 17:10:30 as ** along with 1 person renatomilani
  • Background and overview for KDD Cup 2002 task 1: information extraction from biomedical articles
    SIGKDD Explor. Newsl., Vol. 4, No. 2. (December 2002), pp. 87-89.
    by Alexander Yeh, Lynette Hirschman, Alexander Morgan
  • Evaluating the automatic mapping of human gene and protein mentions to unique identifiers.
    (2007)
    by AA Morgan, B Wellner, JB Colombe, R Arens, ME Colosimo, L Hirschman
    posted to bionlp gene normalization by vlachmore on 2007-12-17 17:03:37 as ****
  • Data preparation and interannotator agreement: BioCreAtIvE task 1B.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by ME Colosimo, AA Morgan, AS Yeh, JB Colombe, L Hirschman
  • Automatic term list generation for entity tagging
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 651-657.
    by Ted Sandler, Andrew I Schein, Lyle H Ungar
  • Automatic classification of verbs in biomedical texts
    (2006), pp. 345-352.
    by Anna Korhonen, Yuval Krymolowski, Nigel Collier
  • Textpresso: an ontology-based information retrieval and extraction system for biological literature.
    PLoS Biol, Vol. 2, No. 11. (November 2004)
    by HM Müller, EE Kenny, PW Sternberg
  • Learning string similarity measures for gene/protein name dictionary look-up using logistic regression.
    Bioinformatics (12 August 2007)
    by Yoshimasa Tsuruoka, John McNaught, Jun'ichi Tsujii, Sophia Ananiadou
  • RelExRelation extraction using dependency parse trees
    Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 365-371.
    by Katrin Fundel, Robert Kuffner, Ralf Zimmer
  • Annotation of anaphoric relations in biomedical full-text articles using a domain-relevant scheme
    (2007)
    posted to anaphora bionlp resolution by vlachmore on 2007-10-08 22:16:36 as read
  • Evaluating and combining and biomedical named entity recognition systems
    (June 2007), pp. 199-200.
    by Andreas Vlachos
    posted to bionlp bootstrapping entity named ner recognition by vlachmore on 2007-10-08 22:15:17 as read
  • BaseNPs that contain gene names: domain specificity and genericity
    (June 2007), pp. 163-170.
    by Ian Lewin
    posted to bionlp parsing syntactic by vlachmore on 2007-10-08 22:14:15 as read
  • From gene names to actual genes
    (2007)
    by Ioannis Korkontzelos, Andreas Vlachos, Ian Lewin
  • Proceedings of the Second BioCreative Challenge Evaluation Workshop
    (April 2007)
    edited by Martin Krallinger, Lynette Hirschman
    posted to biocreative bionlp by vlachmore on 2007-10-08 22:10:00 as **
  • Tackling the BioCreative2 Gene Mention task with Conditional Random Fields and Syntactic Parsing
    (2007)
    by Andreas Vlachos
    posted to biocreative bionlp entity named ner recognition by vlachmore on 2007-10-08 22:07:24 as read
  • Penn/Umass/CHOP BiocreativeII Systems
    (2007)
    by Kuzman Ganchev, Koby Crammer, Fernando Pereira, Gideon Mann, Kedar Bellare, Andrew Mccallum, Steve Carroll, Yang Jin, Peter White
    posted to biocreative bionlp entity named ner recognition by vlachmore on 2007-10-08 22:06:34 as read
  • Assessment of the Second BioCreative PPI Task: Automatic Extraction of Protein-Protein Interactions
    (2007)
    by Martin Krallinger, Florian Leitner, Alfonso Valencia
    posted to bionlp interaction ppi protein-protein by vlachmore on 2007-10-08 22:04:22 as read
  • Bootstrapping and Evaluating Named Entity Recognition in the Biomedical Domain
    (June 2006), pp. 138-145.
    by Andreas Vlachos, Caroline Gasperin
    posted to bionlp bootstrapping entity named ner recognition by vlachmore on 2007-10-08 21:44:33 as read
  • Semi-supervised anaphora resolution in biomedical texts
    (2006), pp. 96-103.
    posted to anaphora bionlp resolution by vlachmore on 2007-10-08 21:40:23 as read along with 1 person bhaddow
  • An Architecture for Language Processing for Scientific Texts
    (2006)
    by Ann Copestake, Peter Corbett, Peter M Rust, CJ Rupp, Advaith Siddharthan, Simone Teufel, Ben Waldron
    posted to bionlp scixml xml by vlachmore on 2007-10-08 21:38:19 as read
  • Bootstrapping the recognition and anaphoric linking of named entities in Drosophila articles.
    Pac Symp Biocomput (2006), pp. 100-111.
  • Text Mining for Biology And Biomedicine
    (2005)
    by Sophia Ananiadou, John Mcnaught
    posted to bionlp by vlachmore on 2007-10-08 21:21:28 as ** along with 1 person and 1 group henk-cul dbmi-nlp
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