Bootstrapping the recognition and anaphoric linking of named entities in Drosophila articles.

by: A Vlachos, C Gasperin, I Lewin, T Briscoe

Pac Symp Biocomput (2006), pp. 100-111.

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Abstract

This paper demonstrates how Drosophila gene name recognition and anaphoric linking of gene names and their products can be achieved using existing information in FlyBase and the Sequence Ontology. Extending an extant approach to gene name recognition we achieved a F-score of 0.8559, and we report a preliminary experiment using a baseline anaphora resolution algorithm. We also present guidelines for annotation of gene mentions in texts and outline how the resulting system is used to aid FlyBase curation.

@article{citeulike:964379, abstract = {This paper demonstrates how Drosophila gene name recognition and anaphoric linking of gene names and their products can be achieved using existing information in FlyBase and the Sequence Ontology. Extending an extant approach to gene name recognition we achieved a F-score of 0.8559, and we report a preliminary experiment using a baseline anaphora resolution algorithm. We also present guidelines for annotation of gene mentions in texts and outline how the resulting system is used to aid FlyBase curation.}, address = {Computer Laboratory, University of Cambridge, 15 JJ Thomson Avenue, CB3 0FD. andreas.vlachos@cl.cam.ac.uk}, author = {Vlachos, A. and Gasperin, C. and Lewin, I. and Briscoe, T. }, citeulike-article-id = {964379}, journal = {Pac Symp Biocomput}, keywords = {bionlp, bootstrapping, entity, gene, named, recognition}, pages = {100--111}, posted-at = {2007-10-08 21:37:08}, priority = {0}, title = {Bootstrapping the recognition and anaphoric linking of named entities in Drosophila articles.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/17094231}, year = {2006} }

RIS record

TY - JOUR ID - citeulike:964379 L3 - citeulike-article-id:964379 TI - Bootstrapping the recognition and anaphoric linking of named entities in Drosophila articles. JF - Pac Symp Biocomput SP - 100 EP - 111 AD - Computer Laboratory, University of Cambridge, 15 JJ Thomson Avenue, CB3 0FD. andreas.vlachos@cl.cam.ac.uk N2 - This paper demonstrates how Drosophila gene name recognition and anaphoric linking of gene names and their products can be achieved using existing information in FlyBase and the Sequence Ontology. Extending an extant approach to gene name recognition we achieved a F-score of 0.8559, and we report a preliminary experiment using a baseline anaphora resolution algorithm. We also present guidelines for annotation of gene mentions in texts and outline how the resulting system is used to aid FlyBase curation. KW - bionlp KW - bootstrapping KW - entity KW - gene KW - named KW - recognition AU - Vlachos, A AU - Gasperin, C AU - Lewin, I AU - Briscoe, T PY - 2006/// UR - http://view.ncbi.nlm.nih.gov/pubmed/17094231 ER -

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