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A graph-search framework for associating gene identifiers with documents

by: William W Cohen, Einat Minkov

BMC Bioinformatics, Vol. 7 (10 October 2006), 440.

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ace active active_learning adaboost adaptation agglomerative agreement algorithm algorithms allocation amibguity analysis anaphora annotation argument aso average bag-of-concepts based bayes bayesian biocreative bioinformatics bionlp boosting bootstrapping bottleneck buffet by carlo categorization chain chunking church class classification classifier clustering cobweb codes collapsed combination comlex committee comparison complete-link component compositional compound concept concept_discovery conditional confidence conformal constrained_clustering constraints context contraints cooccurrence coreference corpora corpus correcting correspondence cost co-testing co-training counts crf criterion curation datasets dependencies dependency detection dimensionality dirichlet disambiguation discrete distance distributional divergence document domain ecoc eigenvalues english ensemble entity entrez entropy error estimation evaluation event expectation-maximization experiments exponential extraction factorization feature feedback fields filtering fisher flybase flyslip frame frames functions gaussian gene gene_ontology generation generative geneways german gibbs grammar grammatical graph graphical graph_kernel guidelines harmonic heat hedge hellinger hierarchical hmm hpsg ibp identifier index indexing indian induction inference information information_gain interaction inter-annotator interpretation iob iobew kdd kernel kernels kl-divergence k-means knn labels language laplacian large laten latent lda learning lexicon likelihood lingpipe logarithmic logistic lop lsi machine machines mallet markov matrix maximum mcmc measure methods metric metrics mining mira mixture model modelling models monte multiclass multinomials multiple muticlass mutual_information naive name named ncbi nearest neighbors ner noise non-negative non-parametric normalization noun on-line ontology opinion output overlap parameter parse parser parsing particle part-of-speech pca perceptron pitman polysemous pool positive ppi predicate prediction principal prior probabilistic probability process processes proper protein-protein qbc query query_by_committee rand random ranking rasp rcv1 recognition reduction regression reinforcement relation relational relationships resolution retrieval reusability reuters rules sampling scheme scixml seed selection selective semantic semantics semi-supervised sense sentiment sequence shallow shared similarity single-link sketch skip-chain smoothing softtfidf software space sparse spectral spectral_clustering speculative speech statistical stick-breaking stopping string string_kernel structural structure subcategorization summarization supervised support svm svms syntactic tagging task term text timed topic transductive transformation-based tree tutorial uncertainty unlabelled unsupervised user variable variable-length variational variational_inference vector verb views v-measure walks web weighting word wordnet wsd xml yor