di stajich genome [38 articles]

PLoS ONE, Vol. 3, No. 8. (2008), e3093.

by Keith R Bradnam, Ian Korf

posted to intron_evolution intron genome gene_structure eukarytoa annotation by stajich on 2008-09-07 20:20:30 as along with 1 person and 1 group bpcusack Berkeley Mycology

Genome research (29 August 2008)

by Vardges Ter-Hovhannisyan, Alexandre Lomsadze, Yury O O Chernoff, Mark Borodovsky

posted to methods genome gene_prediction fungi bioinformatics annotation by stajich on 2008-09-07 20:19:51 as along with 1 person and 1 group bcondon Berkeley Mycology

Nat Rev Genet, Vol. 9, No. 9. (2008), pp. 678-688.

by Lincoln D Stein

posted to bioinformatics database genome informatics infrastructure by stajich on 2008-08-19 16:25:02 as along with 16 people and 4 groups carolh12 ilya alaninmcr druvus srp33 dullhunk tharris mrochman dansullivanblk neils jandot GustavoLacerda jago fgibson thomaskelder sjcockell Berkeley Mycology Global_health_enterprise_architecture Knowledge_Economy_Reform kpa-resources

PLoS ONE, Vol. 3, No. 6. (2008)

by DM Soanes, I Alam, M Cornell, HM Wong, C Hedeler, NW Paton, M Rattray, SJ Hubbard, SG Oliver, NJ Talbot

posted to analysis comparative_genomics fungi genome phylogenomics by stajich on 2008-08-16 00:49:43 as along with 1 person and 1 group GustavoLacerda Berkeley Mycology

Nucleic acids research, Vol. 36, No. 13. (August 2008)

by TJ Pugh, AD Delaney, N Farnoud, S Flibotte, M Griffith, HI Li, H Qian, P Farinha, RD Gascoyne, MA Marra

posted to amplification copy_number_variation genome by stajich on 2008-07-30 17:56:53 as along with 2 people and 1 group nuin jyuh Berkeley Mycology

Eukaryotic cell, Vol. 7, No. 5. (May 2008), pp. 848-858.

by H Muller, C Hennequin, J Gallaud, B Dujon, C Fairhead

posted to candida fungi genome mating_genes mating_type saccharomyces by stajich on 2008-07-21 04:13:59 as along with 1 group Berkeley Mycology

Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)

by MS Bansal, O Eulenstein

posted to bioinformatics gene_duplication genome methods by stajich on 2008-07-07 03:37:26 as along with 2 people and 1 group bpcusack tharris Berkeley Mycology

BMC Genomics, Vol. 9 (29 April 2008), 200.

by Bryony AP Williams, Renny CH Lee, James J Becnel, Louis M Weiss, Naomi M Fast, Patrick J Keeling

posted to comparative_genomics genome microsporidia by stajich on 2008-07-07 03:36:49 as along with 1 group Berkeley Mycology

PLoS genetics, Vol. 3, No. 7. (20 July 2007)

by Fusheng Wei, Ed Coe, William Nelson, Arvind K K Bharti, Fred Engler, Ed Butler, Hyeran Kim, Jose Luis L Goicoechea, Mingsheng Chen, Seunghee Lee, Galina Fuks, Hector Sanchez-Villeda, Steven Schroeder, Zhiwei Fang, Michael McMullen, Georgia Davis, John E E Bowers, Andrew H H Paterson, Mary Schaeffer, Jack Gardiner, Karen Cone, Joachim Messing, Carol Soderlund, Rod A A Wing

posted to genome genome_evolution maize synteny by stajich on 2008-06-09 05:37:06 as along with 1 person and 1 group kengg Berkeley Mycology

Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 839-846.

by Robert A Holt, Steven J Jones

posted to 454 genome illumina nextgensequencing sequencing solexa by stajich on 2008-06-02 20:17:41 as along with 12 people and 1 group kintoki tmmurali reyez lp2 GustavoLacerda tharris balicea caseybrown dchughes hpaces serdarbozdag jfr Berkeley Mycology

Genetics, Vol. 179, No. 1. (1 May 2008), pp. 193-197.

by Glen L Wheeler, Diego Miranda-Saavedra, Geoffrey J Barton

posted to chlamydomonas evolution gene_family genome genome_evolution signaling by stajich on 2008-05-26 16:51:35 as along with 1 person and 1 group cmzmasek Berkeley Mycology

BMC Bioinformatics, Vol. 9 (09 April 2008), 180.

by Ralf Schmid, Mark L Blaxter

posted to annotation est genome genome_annotation by stajich on 2008-05-17 02:19:11 as along with 2 people and 1 group renatomilani jyuh Berkeley Mycology

Genome Biology, Vol. 9 (06 May 2008), R77.

by Eric Espagne, Olivier Lespinet, Fabienne Malagnac, Corinne Da Silva, Olivier Jaillon, Betina M Porcel, Arnaud Couloux, Jean-Marc Aury, Béatrice Ségurens, Julie Poulain, Véronique Anthouard, Sandrine Grossetete, Hamid Khalili, Evelyne Coppin, Michelle Déquard-Chablat, Marguerite Picard, Véronique Contamine, Sylvie Arnaise, Anne Bourdais, Véronique Berteaux-Lecellier, Daniel Gautheret, Ronald P de Vries, Evy Battaglia, Pedro M Coutinho, Etienne GJ Danchin, Bernard Henrissat, Riyad EL Khoury, Annie Sainsard-Chanet, Antoine Boivin, Bérangère Pinan-Lucarré, Carole H Sellem, Robert Debuchy, Patrick Wincker, Jean Weissenbach, Philippe Silar

posted to genome genome_paper podospora by stajich on 2008-05-12 00:48:27 as along with 1 person and 1 group jamselem Berkeley Mycology

Insect Molecular Biology, Vol. 15, No. 5. (October 2006), pp. 715-718.

by X Qin, JD Evans, KA Aronstein, KD Murray, GM Weinstock

posted to ascosphaera coccipaper genome paenibacillus by stajich on 2008-04-19 21:26:14 as along with 1 group Berkeley Mycology

BMC Evolutionary Biology, Vol. 8 (12 April 2008), 110.

by Nicolas Delaroque, Wilhelm Boland

posted to algae comparative comparative_genomics genome virus by stajich on 2008-04-15 06:20:29 as along with 1 group Berkeley Mycology

Nature, Vol. 450, No. 7167., pp. 219-232.

by Alexander Stark, Michael F Lin, Pouya Kheradpour, Jakob S Pedersen, Leopold Parts, Joseph W Carlson, Madeline A Crosby, Matthew D Rasmussen, Sushmita Roy, Ameya N Deoras, Graham J Ruby, Julius Brennecke, Harvard F Curators, Berkeley, Emily Hodges, Angie S Hinrichs, Anat Caspi, Benedict Paten, Seung-Won Park, Mira V Han, Morgan L Maeder, Benjamin J Polansky, Bryanne E Robson, Stein Aerts, Jacques van Helden, Bassem Hassan, Donald G Gilbert, Deborah A Eastman, Michael Rice, Michael Weir, Matthew W Hahn, Yongkyu Park, Colin N Dewey, Lior Pachter, James W Kent, David Haussler, Eric C Lai, David P Bartel, Gregory J Hannon, Thomas C Kaufman, Michael B Eisen, Andrew G Clark, Douglas Smith, Susan E Celniker, William M Gelbart, Manolis Kellis

posted to comparative_genomics drosophila genome genome_paper sequencing by stajich on 2008-04-05 19:56:58 as along with 14 people and 3 groups operon tmmurali djkt timflutre lp2 cabbagezs nklee hpaces roys caseybrown gjuggler shuzhens PetrovLab cisevol csb_journal_club_public Berkeley Mycology Drosophila-Genetics-Genomics-2008

Genome Biology, Vol. 8 (09 March 2007), R34.

by Michael C Schatz, Adam M Phillippy, Ben Shneiderman, Steven L Salzberg

posted to assembly bioinformatics comparison genome by stajich on 2008-03-23 21:27:35 as along with 2 people and 2 groups azazello Neeperando Berkeley Mycology gatech-compgenomics

J Biotechnol (9 March 2006)

by Jens Reeder, Matthias Höchsmann, Marc Rehmsmeier, Björn Voss, Robert Giegerich

posted to analysis gene_prediction genome noncoding noncoding_rna rna rna_gene software by stajich on 2008-03-10 23:24:36 as along with 12 people and 4 groups marcius eckart_bindewald tardigrade andersbj arcticrasta mtagaya condon Hosna Eonwe cthachuk physics reyez microRNA beta BioinfoCIPF SGU-CIPF

Plant Cell, Vol. 19, No. 11. (1 November 2007), pp. 3318-3326.

by Darren M Soanes, Thomas A Richards, Nicholas J Talbot

posted to fungal genome oomycete pathogen plantpathogen review by stajich on 2008-02-08 21:01:28 as along with 1 group Berkeley Mycology

Nature, Vol. 434, No. 7036., pp. 980-986.

by Ralph A Dean, Nicholas J Talbot, Daniel J Ebbole, Mark L Farman, Thomas K Mitchell, Marc J Orbach, Michael Thon, Resham Kulkarni, Jin-Rong Xu, Huaqin Pan, Nick D Read, Yong-Hwan Lee, Ignazio Carbone, Doug Brown, Yeon Y Oh, Nicole Donofrio, Jun S Jeong, Darren M Soanes, Slavica Djonovic, Elena Kolomiets, Cathryn Rehmeyer, Weixi Li, Michael Harding, Soonok Kim, Marc-Henri Lebrun, Heidi Bohnert, Sean Coughlan, Jonathan Butler, Sarah Calvo, Li-Jun Ma, Robert Nicol, Seth Purcell, Chad Nusbaum, James E Galagan, Bruce W Birren

posted to fungi genome genome_paper magnaporthe sequencing by stajich on 2007-12-12 19:24:27 as along with 2 people and 1 group jwortman alexl Berkeley Mycology

Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3156-3165.

by BY Liao, YJ Chang, JM Ho, MJ Hwang

posted to evolution genome synteny by stajich on 2007-12-02 23:47:49 as along with 1 person and 1 group indigoviolet EisenLab

Bioinformatics, Vol. 23, No. 13. (1 July 2007)

by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev

posted to evolution genome phylogenetics synteny yeast by stajich on 2007-12-02 23:47:19 as along with 3 people and 1 group shigepong seitentaisei tharris Berkeley Mycology

Plant Cell (16 November 2007)

by James K K Hane, Rohan G T G Lowe, Peter S S Solomon, Kar-Chun C Tan, Conrad L L Schoch, Joseph W W Spatafora, Pedro W W Crous, Chinappa Kodira, Bruce W W Birren, James E E Galagan, Stefano F F F Torriani, Bruce A A McDonald, Richard P P Oliver

posted to dothideomycete fungi genome stagonospora by stajich on 2007-11-26 22:32:45 as along with 1 group Berkeley Mycology

Mycologia, Vol. 99, No. 4. (1 July 2007), pp. 553-561.

by KA Aronstein, KD Murray, JH de Leon, X Qin, GM Weinstock

posted to ascosphaera genome mating_genes by stajich on 2007-11-20 19:26:44 as along with 1 group Berkeley Mycology

Proceedings of the National Academy of Sciences (13 November 2007), 0706756104.

by Jun Xu, Charles W Saunders, Ping Hu, Raymond A Grant, Teun Boekhout, Eiko E Kuramae, James W Kronstad, Yvonne M Deangelis, Nancy L Reeder, Kevin R Johnstone, Meredith Leland, Angela M Fieno, William M Begley, Yiping Sun, Martin P Lacey, Tanuja Chaudhary, Thomas Keough, Lien Chu, Russell Sears, Bo Yuan, Thomas L Dawson

posted to basidiomycota dandruff fungi genome by stajich on 2007-11-13 19:15:18 as

Genome Res. (5 November 2007), gr.6531807.

by Michael J Cornell, Intikhab Alam, Darren M Soanes, Han M Wong, Cornelia Hedeler, Norman W Paton, Magnus Rattray, Simon J Hubbard, Nicholas J Talbot, Stephen G Oliver

posted to fungal fungi genome by stajich on 2007-11-12 17:47:10 as along with 6 people and 1 group grahamc GustavoLacerda nklee idonaldson seitentaisei alanrw Berkeley Mycology

Nature Biotechnology, Vol. 25, No. 3. (04 March 2007), pp. 319-326.

by Thomas W Jeffries, Igor V Grigoriev, Jane Grimwood, José M Laplaza, Andrea Aerts, Asaf Salamov, Jeremy Schmutz, Erika Lindquist, Paramvir Dehal, Harris Shapiro, Yong-Su Jin, Volkmar Passoth, Paul M Richardson

posted to genome pichia by stajich on 2007-10-18 00:37:50 as

Science, Vol. 317, No. 5846. (28 September 2007), pp. 1927-1930.

by Gilbert, Lynn P Tomsho, Snjezana Rendulic, Michael Packard, Daniela I Drautz, Andrei Sher, Alexei Tikhonov, Love Dalen, Tatyana Kuznetsova, Pavel Kosintsev, Paula F Campos, Thomas Higham, Matthew J Collins, Andrew S Wilson, Fyodor Shidlovskiy, Bernard Buigues, Per G Ericson, Mietje Germonpre, Anders Gotherstrom, Paola Iacumin, Vladimir Nikolaev, Malgosia Nowak-Kemp, Eske Willerslev, James R Knight, Gerard P Irzyk, Clotilde S Perbost, Karin M Fredrikson, Timothy T Harkins, Sharon Sheridan, Webb Miller, Stephan C Schuster

posted to ancient_dna genome mammoth sequencing by stajich on 2007-09-28 17:47:05 as along with 2 people dchughes EsepBib

BMC Genomics, Vol. 7 (09 October 2006), 251.

by Paul Bowyer, Marcin Fraczek, David W Denning

posted to allergen comparative_genomics fungal genome by stajich on 2007-09-04 22:04:45 as

Science, Vol. 307, No. 5713. (25 February 2005), pp. 1321-1324.

by Brendan J Loftus, Eula Fung, Paola Roncaglia, Don Rowley, Paolo Amedeo, Dan Bruno, Jessica Vamathevan, Molly Miranda, Iain J Anderson, James A Fraser, Jonathan E Allen, Ian E Bosdet, Michael R Brent, Readman Chiu, Tamara L Doering, Maureen J Donlin, Cletus A D'Souza, Deborah S Fox, Viktoriya Grinberg, Jianmin Fu, Marilyn Fukushima, Brian J Haas, James C Huang, Guilhem Janbon, Steven J Jones, Hean L Koo, Martin I Krzywinski, June K Kwon-Chung, Klaus B Lengeler, Rama Maiti, Marco A Marra, Robert E Marra, Carrie A Mathewson, Thomas G Mitchell, Mihaela Pertea, Florenta R Riggs, Steven L Salzberg, Jacqueline E Schein, Alla Shvartsbeyn, Heesun Shin, Martin Shumway, Charles A Specht, Bernard B Suh, Aaron Tenney, Terry R Utterback, Brian L Wickes, Jennifer R Wortman, Natasja H Wye, James W Kronstad, Jennifer K Lodge, Joseph Heitman, Ronald W Davis, Claire M Fraser, Richard W Hyman

posted to cryptococcus fungi genome genome_paper by stajich on 2007-05-22 06:17:32 as along with 5 people and 3 groups labedan Cortel jwortman dalloliogm alexl Web2 splicing yeast

PLoS Genet, Vol. 2, No. 12. (15 December 2006)

by Nicholas R R Thomson, Sarah Howard, Brendan W W Wren, Matthew T G T Holden, Lisa Crossman, Gregory L L Challis, Carol Churcher, Karen Mungall, Karen Brooks, Tracey Chillingworth, Theresa Feltwell, Zahra Abdellah, Heidi Hauser, Kay Jagels, Mark Maddison, Sharon Moule, Mandy Sanders, Sally Whitehead, Michael A A Quail, Gordon Dougan, Julian Parkhill, Michael B B Prentice

posted to pathogen microbial genome_evolution genome by stajich on 2007-01-18 01:00:26 as along with 2 people AaronDarling martainn

PNAS, Vol. 103, No. 41. (10 October 2006), pp. 15200-15205.

by BS Goldman, WC Nierman, D Kaiser, SC Slater, AS Durkin, JA Eisen, CM Ronning, WB Barbazuk, M Blanchard, C Field, C Halling, G Hinkle, O Iartchuk, HS Kim, C Mackenzie, R Madupu, N Miller, A Shvartsbeyn, SA Sullivan, M Vaudin, R Wiegand, HB Kaplan

posted to cellular_signaling comparative_genomics development genome multicellular myxobacterial by stajich on 2006-12-12 14:29:31 as along with 3 people bjorns treangen blobbybirdman

PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45.

by Lincoln D Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H Fitch, Lucinda A Fulton, Robert E Fulton, Sam Griffiths-Jones, Todd W Harris, Ladeana W Hillier, Ravi Kamath, Patricia E Kuwabara, Elaine R Mardis, Marco A Marra, Tracie L Miner, Patrick Minx, James C Mullikin, Robert W Plumb, Jane Rogers, Jacqueline E Schein, Marc Sohrmann, John Spieth, Jason E Stajich, Chaochun Wei, David Willey, Richard K Wilson, Richard Durbin, Robert H Waterston

posted to caenorhabditis comparative_genomics genome genome_evolution by stajich on 2006-12-08 21:09:37 as along with 2 people and 1 group indigoviolet sujaikumar EisenLab

Genome Res, Vol. 12, No. 10. (October 2002), pp. 1599-1610.

by LD Stein, C Mungall, S Shu, M Caudy, M Mangone, A Day, E Nickerson, JE Stajich, TW Harris, A Arva, S Lewis

posted to bioinformatics bioperl browser genome by stajich on 2006-12-08 21:08:26 as along with 7 people and 1 group Cortel indigoviolet dquest natstreet dullhunk tharris farhat EisenLab

Gene, Vol. 238, No. 1. (30 September 1999), pp. 103-114.

by L Patthy

posted to evolution genome by stajich on 2006-12-08 20:40:28 as

Microbiol. Mol. Biol. Rev., Vol. 68, No. 1. (1 March 2004), pp. 1-108.

by Katherine A Borkovich, Lisa A Alex, Oded Yarden, Michael Freitag, Gloria E Turner, Nick D Read, Stephan Seiler, Deborah Bell-Pedersen, John Paietta, Nora Plesofsky, Michael Plamann, Marta Goodrich-Tanrikulu, Ulrich Schulte, Gertrud Mannhaupt, Frank E Nargang, Alan Radford, Claude Selitrennikoff, James E Galagan, Jay C Dunlap, Jennifer J Loros, David Catcheside, Hirokazu Inoue, Rodolfo Aramayo, Michael Polymenis, Eric U Selker, Matthew S Sachs, George A Marzluf, Ian Paulsen, Rowland Davis, Daniel J Ebbole, Alex Zelter, Eric R Kalkman, Rebecca O'Rourke, Frederick Bowring, Jane Yeadon, Chizu Ishii, Keiichiro Suzuki, Wataru Sakai, Robert Pratt

posted to fungi genome multicellular neurospora by stajich on 2006-12-08 19:56:36 as along with 1 person hplatero

Nature, Vol. 435, No. 7038., pp. 43-57.

by L Eichinger, JA Pachebat, G Glöckner, M Rajandream, R Sucgang, M Berriman, J Song, R Olsen, K Szafranski, Q Xu, B Tunggal, S Kummerfeld, M Madera, BA Konfortov, F Rivero, AT Bankier, R Lehmann, N Hamlin, R Davies, P Gaudet, P Fey, K Pilcher, G Chen, D Saunders, E Sodergren, P Davis, A Kerhornou, X Nie, N Hall, C Anjard, L Hemphill, N Bason, P Farbrother, B Desany, E Just, T Morio, R Rost, C Churcher, J Cooper, S Haydock, Nv van Driessche, A Cronin, I Goodhead, D Muzny, T Mourier, A Pain, M Lu, D Harper, R Lindsay, H Hauser, K James, M Quiles, Madan M Babu, T Saito, C Buchrieser, A Wardroper, M Felder, M Thangavelu, D Johnson, A Knights, H Loulseged, K Mungall, K Oliver, C Price, MA Quail, H Urushihara, J Hernandez, E Rabbinowitsch, D Steffen, M Sanders, J Ma, Y Kohara, S Sharp, M Simmonds, S Spiegler, A Tivey, S Sugano, B White, D Walker, J Woodward, T Winckler, Y Tanaka, G Shaulsky, M Schleicher, G Weinstock, A Rosenthal, EC Cox, RL Chisholm, R Gibbs, WF Loomis, M Platzer, RR Kay, J Williams, PH Dear, AA Noegel, B Barrell, A Kuspa

posted to dictyostelium genome multicellular by stajich on 2006-12-08 19:45:34 as along with 5 people and 3 groups Cortel jwortman bala mattjb fhaenel ComplexAdaptiveSystems DSTO-CAS DictyosteliumGroup

Nature, Vol. 444, No. 7115., pp. 97-101.

by Jörg Kämper, Regine Kahmann, Michael Bölker, Li-Jun Ma, Thomas Brefort, Barry J Saville, Flora Banuett, James W Kronstad, Scott E Gold, Olaf Müller, Michael H Perlin, Han AB Wösten, Ronald de Vries, José Ruiz-Herrera, Cristina G Reynaga-Peña, Karen Snetselaar, Michael Mccann, José Pérez-Martín, Michael Feldbrügge, Christoph W Basse, Gero Steinberg, Jose I Ibeas, William Holloman, Plinio Guzman, Mark Farman, Jason E Stajich, Rafael Sentandreu, Juan M González-Prieto, John C Kennell, Lazaro Molina, Jan Schirawski, Artemio Mendoza-Mendoza, Doris Greilinger, Karin Münch, Nicole Rössel, Mario Scherer, Miroslav Vraneš, Oliver Ladendorf, Volker Vincon, Uta Fuchs, Björn Sandrock, Shaowu Meng, Eric CH Ho, Matt J Cahill, Kylie J Boyce, Jana Klose, Steven J Klosterman, Heine J Deelstra, Lucila Ortiz-Castellanos, Weixi Li, Patricia Sanchez-Alonso, Peter H Schreier, Isolde Häuser-Hahn, Martin Vaupel, Edda Koopmann, Gabi Friedrich, Hartmut Voss, Thomas Schlüter, Jonathan Margolis, Darren Platt, Candace Swimmer, Andreas Gnirke, Feng Chen, Valentina Vysotskaia, Gertrud Mannhaupt, Ulrich Güldener, Martin Münsterkötter, Dirk Haase, Matthias Oesterheld, Hans-Werner Mewes, Evan W Mauceli, David Decaprio, Claire M Wade, Jonathan Butler, Sarah Young, David B Jaffe, Sarah Calvo, Chad Nusbaum, James Galagan, Bruce W Birren

posted to fungal genome genome_paper plantpathogen ustilago by stajich on 2006-12-07 01:32:24 as along with 2 people alexl bootsy