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di stajich library [560 articles]

Articoli aggiunti di recente nella biblioteca di stajich .
  • Meiotic silencing by unpaired DNA: properties, regulation and suppression.
    Genetics, Vol. 161, No. 4. (August 2002), pp. 1483-1495.
    by PK Shiu, RL Metzenberg
    posted to neurospora msud meiotic_silencing meiosis by stajich on 2008-07-02 01:18:39 as ** along with 1 group Berkeley Mycology
  • SAD-2 is required for meiotic silencing by unpaired DNA and perinuclear localization of SAD-1 RNA-directed RNA polymerase.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 7. (14 February 2006), pp. 2243-2248.
    by PK Shiu, D Zickler, NB Raju, G Ruprich-Robert, RL Metzenberg
    posted to neurospora msud meiotic_silencing meiosis by stajich on 2008-07-02 01:18:23 as ** along with 1 group Berkeley Mycology
  • Meiotic silencing by unpaired DNA.
    Cell, Vol. 107, No. 7. (28 December 2001), pp. 905-916.
    by PK Shiu, NB Raju, D Zickler, RL Metzenberg
    posted to neurospora msud meiotic_silencing meiosis by stajich on 2008-07-02 01:17:57 as ** along with 1 person and 1 group erbon Berkeley Mycology
  • Species Names in the <i>PhyloCode</i>: The Approach Adopted by the International Society for Phylogenetic Nomenclature
    Systematic Biology, Vol. 57, No. 3. (2008), pp. 507-514.
    by Benoît Dayrat, Philip D Cantino, Julia A Clarke, Kevin de Queiroz
    posted to phylocode by stajich on 2008-07-01 16:57:45 as ** along with 1 group Berkeley Mycology
  • Climate Change and the Future of California's Endemic Flora
    PLoS ONE, Vol. 3, No. 6. (25 June 2008), e2502.
    by Scott R Loarie, Benjamin E Carter, Katharine Hayhoe, Sean Mcmahon, Richard Moe, Charles A Knight, David D Ackerly
    posted to plants diversity climate_change by stajich on 2008-07-01 15:10:45 as ** along with 1 group Berkeley Mycology
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to transcription_factor promotor evolution evodevo even-skipped drosophila binding_site by stajich on 2008-06-28 18:16:38 as ** along with 5 people and 2 groups emptyhb pradiptaray cisevol caseybrown djkt cis-regulatory-evolution Berkeley Mycology
  • Assembly of Viral Metagenomes from Yellowstone Hot Springs
    Appl. Environ. Microbiol., Vol. 74, No. 13. (1 July 2008), pp. 4164-4174.
    by Thomas Schoenfeld, Melodee Patterson, Paul M Richardson, Eric K Wommack, Mark Young, David Mead
    posted to yellowstone virus thermophile metagenomics hot_spring extremophile by stajich on 2008-06-27 05:04:26 as ** along with 2 people and 1 group tharris skato_toyaku Berkeley Mycology
  • Reprogramming a maize plant: Transcriptional and metabolic changes induced by the fungal biotroph Ustilago maydis.
    The Plant journal : for cell and molecular biology (18 June 2008)
    by Gunther Doehlemann, Ramon Wahl, Robin J J Horst, Lars M M Voll, Björn Usadel, Fabien Poree, Mark Stitt, Jörn Pons-Kühnemann, Uwe Sonnewald, Regine Kahmann, Jörg Kämper
    posted to ustilago transcriptional_regulation plantpathogen maize by stajich on 2008-06-26 08:04:59 as ** along with 1 person and 1 group bcondon Berkeley Mycology
  • The Evolution of the DLK1-DIO3 Imprinted Domain in Mammals
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e135.
    by Carol A Edwards, Andrew J Mungall, Lucy Matthews, Edward Ryder, Dionne J Gray, Andrew J Pask, Geoffrey Shaw, Jennifer A Graves, Jane Rogers, Ian Dunham, Marilyn B Renfree, Anne C Ferguson-Smith
    posted to mirna mammal imprinting by stajich on 2008-06-26 07:08:15 as ** along with 1 person and 1 group djkt Berkeley Mycology
  • Tinker where the tinkering's good.
    Trends in genetics : TIG (29 May 2008)
    by Matthew V V Rockman, David L L Stern
    posted to evolution evodevo drosophila cis-regulatory by stajich on 2008-06-22 20:12:47 as ** along with 1 person and 1 group Stew Berkeley Mycology
  • Sex chromosomes and speciation in Drosophila
    Trends in Genetics, Vol. 24, No. 7. (July 2008), pp. 336-343.
    by Daven C Presgraves
    posted to speciation sex_chromosome drosophila by stajich on 2008-06-22 20:12:28 as ** along with 1 person and 1 group pradiptaray Berkeley Mycology
  • MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Yi Zhao, Shunmin He, Changning Liu, Songwei Ru, Haitao Zhao, Zhen Yang, Pengcheng Yang, Xiongyin Yuan, Shiwei Sun, Dongbo Bu, Jiefu Huang, Geir Skogerbø, Runsheng Chen
    posted to regulatory_evolution regulation noncoding_rna mirna metazoan gene_expression by stajich on 2008-06-22 20:12:10 as ** along with 4 people and 2 groups bertelsen biozy imtechnology maralena Berkeley Mycology microRNA
  • Population genomics of domestic and wild yeasts
    Nature Precedings (19 June 2008)
    by David Carter, Gianni Liti, Alan Moses, Leopold Parts, Stephen James, Robert Davey, Ian Roberts, Anders Blomberg, Jonas Warringer, Austin Burt, Vassiliki Koufopanou, Isheng Tsai, Casey Bergman, Douda Bensasson, Michael O’kelly, Alexander van Oudenaarden, David Barton, Elizabeth Bailes, Matthew Jones, Michael Quail, Ian Goodhead, Sarah Sims, Frances Smith, Richard Durbin, Edward Louis
    posted to yeast population_genomics population_genetics by stajich on 2008-06-21 17:21:29 as ** along with 1 person and 1 group michaelbarton Berkeley Mycology
  • Alternative splicing: A missing piece in the puzzle of intron gain.
    Proceedings of the National Academy of Sciences of the United States of America (7 May 2008)
    by Rosa Tarrío, Francisco J J Ayala, Francisco Rodríguez-Trelles
    posted to intron_sliding intron_loss intron_gain intron_evolution evolution by stajich on 2008-06-20 18:00:41 as ** along with 3 people and 1 group clearbluespring bootsy imtechnology Berkeley Mycology
  • Mycobiota and mycotoxin producing fungi from cocoa beans.
    International journal of food microbiology (2 May 2008)
    by M Sánchez-Hervás, J V V Gil, F Bisbal, D Ramón, P V V Martínez-Culebras
    posted to plantpathogen mycotoxin fungi cocoa by stajich on 2008-06-16 04:07:43 as ** along with 1 group Berkeley Mycology
  • Evidence for strong inter- and intracontinental phylogeographic structure in Amanita muscaria, a wind-dispersed ectomycorrhizal basidiomycete.
    Molecular phylogenetics and evolution (29 April 2008)
    by József Geml, Rodham E E Tulloss, Gary A A Laursen, Nina A A Sazanova, D L L Taylor
    posted to population_genetics phylogeography mycorrhizal fungi dispersal amanita by stajich on 2008-06-15 23:42:10 as ** along with 1 person and 1 group pradiptaray Berkeley Mycology
  • An Improved General Amino Acid Replacement Matrix
    Mol Biol Evol, Vol. 25, No. 7. (1 July 2008), pp. 1307-1320.
    by Si Q Le, Olivier Gascuel
    posted to protein_evolution phylogenetics molecular_evolution methods evolution bioinformatics by stajich on 2008-06-14 07:08:00 as ** along with 1 group Berkeley Mycology
  • Epigenetic remodeling of the fungal secondary metabolome.
    Organic & biomolecular chemistry, Vol. 6, No. 11. (7 June 2008), pp. 1895-1897.
    by RB Williams, JC Henrikson, AR Hoover, AE Lee, RH Cichewicz
    posted to secondary_metabolite fungi filamentous ascomycota by stajich on 2008-06-13 23:36:51 as ** along with 1 group Berkeley Mycology
  • Germination, Genetics, and Growth of an Ancient Date Seed
    Science, Vol. 320, No. 5882. (13 June 2008), 1464.
    by Sarah Sallon, Elaine Solowey, Yuval Cohen, Raia Korchinsky, Markus Egli, Ivan Woodhatch, Orit Simchoni, Mordechai Kislev
    posted to germination extinction by stajich on 2008-06-13 17:00:59 as **
  • Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome.
    Current biology : CB, Vol. 18, No. 10. (20 May 2008), pp. 758-762.
    by C Addo-Quaye, TW Eshoo, DP Bartel, MJ Axtell
    posted to solexa smallrna sirna sequencing mirna methods illumina bioinformatics by stajich on 2008-06-13 01:19:25 as ** along with 1 group Berkeley Mycology
  • Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends.
    Nature biotechnology (9 June 2008)
    by Marcelo A A German, Manoj Pillay, Dong-Hoon H Jeong, Amit Hetawal, Shujun Luo, Prakash Janardhanan, Vimal Kannan, Linda A A Rymarquis, Kan Nobuta, Rana German, Emanuele De Paoli, Cheng Lu, Gary Schroth, Blake C C Meyers, Pamela J J Green
    posted to solexa smallrna sequencing mirna methods htg bioinformatics by stajich on 2008-06-13 01:11:30 as ** along with 1 group Berkeley Mycology
  • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    Genome Res. (11 June 2008), gr.079558.108.
    by John Marioni, Cristopher Mason, Shrikant Mane, Matthew Stephens, Yoav Gilad
    posted to solexa sequencing rnaseq methods gene_expression bioinformatics by stajich on 2008-06-11 21:57:14 as ** along with 8 people and 1 group vmarshal lusk fpattyn ela503 semrich balicea vega giovanni Berkeley Mycology
  • UniPrime: a workflow-based platform for improved universal primer design
    Nucl. Acids Res., Vol. 36, No. 10. (1 June 2008), e56.
    by Michael Bekaert, Emma C Teeling
    posted to primer_design bioinformatics by stajich on 2008-06-09 16:41:38 as ** along with 3 people and 1 group niallhaslam tharris jyuh Berkeley Mycology
  • Complex evolution of the DAL5 transporter family
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Linda Hellborg, Megan Woolfit, Mattias A Hellborg, Jure Piskur
    posted to yeast transporter saccharomyces gene_family gene_duplication fungi ascomycota by stajich on 2008-06-09 05:45:17 as ** along with 1 person and 1 group neils Berkeley Mycology
  • Physical and Genetic Structure of the Maize Genome Reflects Its Complex Evolutionary History.
    PLoS genetics, Vol. 3, No. 7. (20 July 2007)
    by Fusheng Wei, Ed Coe, William Nelson, Arvind K K Bharti, Fred Engler, Ed Butler, Hyeran Kim, Jose Luis L Goicoechea, Mingsheng Chen, Seunghee Lee, Galina Fuks, Hector Sanchez-Villeda, Steven Schroeder, Zhiwei Fang, Michael McMullen, Georgia Davis, John E E Bowers, Andrew H H Paterson, Mary Schaeffer, Jack Gardiner, Karen Cone, Joachim Messing, Carol Soderlund, Rod A A Wing
    posted to synteny maize genome_evolution genome by stajich on 2008-06-09 05:37:06 as ** along with 1 person and 1 group kengg Berkeley Mycology
  • Development and application of a green fluorescent protein sentinel system for identification of RNA interference in Blastomyces dermatitidis illuminates the role of septin in morphogenesis and sporulation.
    Eukaryotic cell, Vol. 6, No. 8. (August 2007), pp. 1299-1309.
    by T Krajaejun, GM Gauthier, CA Rappleye, TD Sullivan, BS Klein
    posted to septin rnai fungi blastomyces by stajich on 2008-06-09 00:55:09 as ** along with 1 group Berkeley Mycology
  • The transcription factor NF-kappaB in the demosponge Amphimedon queenslandica: insights on the evolutionary origin of the Rel homology domain.
    Development genes and evolution, Vol. 218, No. 1. (January 2008), pp. 23-32.
    by M Gauthier, BM Degnan
    posted to multicellular metazoa evolution development by stajich on 2008-06-09 00:54:16 as ** along with 1 group Berkeley Mycology
  • Four psychrotolerant species with high chemical diversity consistently producing cycloaspeptide A, Penicillium jamesonlandense sp. nov., Penicillium ribium sp. nov., Penicillium soppii and Penicillium lanosum.
    International journal of systematic and evolutionary microbiology, Vol. 56, No. Pt 6. (June 2006), pp. 1427-1437.
    by JC Frisvad, TO Larsen, PW Dalsgaard, KA Seifert, G Louis-Seize, EK Lyhne, BB Jarvis, JC Fettinger, DP Overy
    posted to psychrophile penicillium aspergillus by stajich on 2008-06-04 23:19:25 as ** along with 1 group Berkeley Mycology
  • The new paradigm of flow cell sequencing
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 839-846.
    by Robert A Holt, Steven J Jones
    posted to solexa sequencing nextgensequencing illumina genome 454 by stajich on 2008-06-02 20:17:41 as ** along with 11 people and 1 group dchughes serdarbozdag hpaces balicea tharris reyez caseybrown GustavoLacerda kintoki lp2 tmmurali Berkeley Mycology
  • EglD, a putative endoglucanase, with an expansin like domain is localized in the conidial cell wall of Aspergillus nidulans
    Fungal Genetics and Biology, Vol. 45, No. 6. (June 2008), pp. 839-850.
    by Demetra Bouzarelou, Maria Billini, Katerina Roumelioti, Vicky Sophianopoulou
    posted to glucanase glucan fungi development condida beta-glucan aspergillus ascospore by stajich on 2008-06-02 03:50:19 as ** along with 1 group Berkeley Mycology
  • Stress induction of mycotoxin biosynthesis genes by abiotic factors.
    FEMS microbiology letters (28 May 2008)
    by Markus Schmidt-Heydt, Naresh Magan, Rolf Geisen
    posted to stress_response secondary_metabolite gene_expression aspergillus by stajich on 2008-06-02 03:35:08 as ** along with 1 group Berkeley Mycology
  • A glimpse of lignicolous marine fungi occurring in coastal water bodies of Tamil Nadu (India).
    Comptes rendus biologies, Vol. 331, No. 6. (June 2008), pp. 475-480.
    by GR Nambiar, K Raveendran, Z Changxing, CA Jaleel
    posted to marine fungi by stajich on 2008-06-02 03:34:05 as ** along with 1 group Berkeley Mycology
  • Genome evolution and speciation genetics of clawed frogs (Xenopus and Silurana).
    Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 4687-4706.
    by BJ Evans
    posted to speciation genome_evolution frog by stajich on 2008-06-02 03:32:12 as ** along with 1 group Berkeley Mycology
  • Cis- and trans-splicing of mRNAs mediated by tRNA sequences in eukaryotic cells.
    Proceedings of the National Academy of Sciences of the United States of America (5 May 2008)
    by Gianfranco Di Segni, Serena Gastaldi, Glauco P P Tocchini-Valentini
    posted to trna transcription splicing mrna by stajich on 2008-06-02 03:20:12 as ** along with 2 people and 1 group austin sebastien_vigneau Berkeley Mycology
  • Analysis of the proteins involved in the structure and synthesis of the cell wall of Ustilago maydis.
    Fungal genetics and biology : FG & B (24 April 2008)
    by José Ruiz-Herrera, Lucila Ortiz-Castellanos, Ana I I Martínez, Claudia León-Ramírez, Rafael Sentandreu
    posted to ustilago fungi chitin cell_wall cell_surface beta-glucan by stajich on 2008-06-02 03:19:14 as ** along with 1 group Berkeley Mycology
  • A Maximum Likelihood Method for Detecting Directional Evolution in Protein Sequences and its Application to Influenza A Virus.
    Molecular biology and evolution (29 May 2008)
    by Sergei L L Kosakovsky Pond, Art F Y F Poon, Andrew J J Leigh Brown, Simon D W D Frost
    posted to positive_selection molecular_evolution by stajich on 2008-06-01 13:47:44 as ** along with 1 person and 1 group zwang Berkeley Mycology
  • Revisiting the Saccharomyces cerevisiae predicted ORFeome
    Genome Res. (23 May 2008), gr.076661.108.
    by Qian-Ru Li, Anne-Ruxandra Carvunis, Haiyuan Yu, Jing-Dong J Han, Quan Zhong, Nicolas Simonis, Stanley Tam, Tong Hao, Niels J Klitgord, Denis Dupuy, Danny Mou, Ilan Wapinski, Aviv Regev, David E Hill, Michael E Cusick, Marc Vidal
    posted to yeast saccharomyces molecular_evolution genome_annotation fungi by stajich on 2008-05-28 05:57:18 as ** along with 2 people and 1 group nklee dbensasson Berkeley Mycology
  • Overdispersion of the molecular clock varies between yeast, Drosophila and mammals
    Genetics (27 May 2008), genetics.108.089185.
    by Trevor Bedford, Ilan Wapinski, Daniel L Hartl
    posted to molecular_evolution by stajich on 2008-05-28 05:55:05 as ** along with 1 person and 1 group djkt Berkeley Mycology
  • Evidence against the energetic cost hypothesis for the short introns in highly expressed genes
    BMC Evolutionary Biology, Vol. 8 (20 May 2008), 154.
    by Yi-Fei Huang, Deng-Ke Niu
    posted to molecular_evolution intron_evolution intron by stajich on 2008-05-27 16:19:13 as ** along with 1 person and 2 groups cisevol Berkeley Mycology BergmanLab
  • Genome Analysis of the Unicellular Green Alga Chlamydomonas reinhardtii Indicates an Ancient Evolutionary Origin for Key Pattern Recognition and Cell-Signaling Protein Families
    Genetics, Vol. 179, No. 1. (1 May 2008), pp. 193-197.
    by Glen L Wheeler, Diego Miranda-Saavedra, Geoffrey J Barton
    posted to signaling genome_evolution genome gene_family evolution chlamydomonas by stajich on 2008-05-26 16:51:35 as ** along with 1 person and 1 group cmzmasek Berkeley Mycology
  • Reevaluation of the cox1 group I intron in Araceae and angiosperms indicates a history dominated by loss rather than horizontal transfer.
    Molecular biology and evolution, Vol. 25, No. 2. (February 2008), pp. 265-276.
    by N Cusimano, LB Zhang, SS Renner
    posted to plants intron_evolution horizontal_gene_transfer by stajich on 2008-05-25 20:58:05 as ** along with 1 group Berkeley Mycology
  • Existence of a pattern of reproductive character displacement in Homobasidiomycota but not in Ascomycota.
    Journal of evolutionary biology, Vol. 21, No. 3. (May 2008), pp. 761-772.
    by M Le Gac, T Giraud
    posted to speciation fungi basidiomycota ascomycota by stajich on 2008-05-25 20:57:03 as ** along with 1 group Berkeley Mycology
  • What can comparative genomics tell us about species concepts in the genus Aspergillus?
    Studies in mycology, Vol. 59 (2007), pp. 11-17.
    by A Rokas, G Payne, ND Fedorova, SE Baker, M Machida, J Yu, DR Georgianna, RA Dean, D Bhatnagar, TE Cleveland, JR Wortman, R Maiti, V Joardar, P Amedeo, DW Denning, WC Nierman
    posted to fungi comparative_genomics aspergillus by stajich on 2008-05-25 20:56:19 as ** along with 1 group Berkeley Mycology
  • Sexual and vegetative compatibility genes in the aspergilli.
    Studies in mycology, Vol. 59 (2007), pp. 19-30.
    by K Pál, AD van Diepeningen, J Varga, RF Hoekstra, PS Dyer, AJ Debets
    posted to vegetative_compatibility het_loci fungi aspergillus by stajich on 2008-05-25 20:53:20 as ** along with 1 group Berkeley Mycology
  • More than a Repair Enzyme: Aspergillus nidulans photolyase-like CryA Is a Regulator of Sexual Development.
    Molecular biology of the cell (21 May 2008)
    by Ozgür Bayram, Christoph Biesemann, Sven Krappmann, Paul Galland, Gerhard H H Braus
    posted to sexual_development fungi development aspergillus by stajich on 2008-05-25 20:52:00 as ** along with 1 group Berkeley Mycology
  • Microbial Biogeography: From Taxonomy to Traits
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1039-1043.
    by Jessica L Green, Brendan J Bohannan, Rachel J Whitaker
    posted to microbial ecology by stajich on 2008-05-25 20:05:01 as ** along with 5 people and 4 groups dbensasson dbikard vaulot jdelcampo djkt Centre de Recherches Interdisciplinaires Papers recommended by the Roscoff Plankton Group Berkeley Mycology Microbial-Ecology
  • Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle
    Proceedings of the National Academy of Sciences (14 March 2008), 0707314105.
    by Isheng J Tsai, Douda Bensasson, Austin Burt, Vassiliki Koufopanou
    posted to saccharomyces population_genomics by stajich on 2008-05-24 19:43:28 as ** along with 1 person and 1 group jasontsai Berkeley Mycology
  • Evidence of recombination in mixed-mating-type and alpha-only populations of Cryptococcus gattii sourced from single eucalyptus tree hollows.
    Eukaryotic cell, Vol. 7, No. 4. (April 2008), pp. 727-734.
    by N Saul, M Krockenberger, D Carter
    posted to sex recombination cryptococcus by stajich on 2008-05-23 21:57:31 as ** along with 1 group Berkeley Mycology
  • Pheromones are essential for male fertility and sufficient to direct chemotropic polarized growth of trichogynes during mating in Neurospora crassa.
    Eukaryotic cell, Vol. 5, No. 3. (March 2006), pp. 544-554.
    by H Kim, KA Borkovich
    posted to pheremone neurospora mating_genes fungi development by stajich on 2008-05-22 07:20:39 as ** along with 1 group Berkeley Mycology
  • A pheromone receptor gene, pre-1, is essential for mating type-specific directional growth and fusion of trichogynes and female fertility in Neurospora crassa.
    Molecular microbiology, Vol. 52, No. 6. (June 2004), pp. 1781-1798.
    by H Kim, KA Borkovich
    posted to pheremone neurospora mating_genes fungi development by stajich on 2008-05-22 07:17:54 as ** along with 1 group Berkeley Mycology
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