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di smbe2008 library [60 articles]

Articoli aggiunti di recente nella biblioteca di smbe2008 .
  • SMBE 2008 Program
    (05 June 2008)
    posted to program by smbe2008 on 2008-06-02 18:14:55 as **
  • Adaptive evolution of HoxA-11 and HoxA-13 at the origin of the uterus in mammals.
    Proceedings. Biological sciences / The Royal Society, Vol. 271, No. 1554. (7 November 2004), pp. 2201-2207.
    by VJ Lynch, JJ Roth, K Takahashi, CW Dunn, DF Nonaka, GF Stopper, GP Wagner
    posted to 08-smbe by smbe2008 on 2008-06-02 18:10:16 as **
  • Predicting evolutionary patterns of mammalian teeth from development.
    Nature, Vol. 449, No. 7161. (27 September 2007), pp. 427-432.
    by KD Kavanagh, AR Evans, J Jernvall
    posted to 08-smbe by smbe2008 on 2008-06-02 18:08:15 as ** along with 1 person and 1 group dpollard EisenLab
  • The genomic and epidemiological dynamics of human influenza A virus
    Nature (16 April 2008)
    by Andrew Rambaut, Oliver G Pybus, Martha I Nelson, Cecile Viboud, Jeffery K Taubenberger, Edward C Holmes
    posted to 08-smbe by smbe2008 on 2008-06-02 18:06:55 as ** along with 2 people emptyhb friendpine
  • Paleontological Evidence to Date the Tree of Life
    Mol Biol Evol, Vol. 24, No. 1. (1 January 2007), pp. 26-53.
    by Michael J Benton, Philip C Donoghue
    posted to 08-smbe by smbe2008 on 2008-06-02 18:06:19 as ** along with 5 people dandaman aprasad Archaeogenetics akifumi maximilianh
  • Parallel evolution of conserved noncoding elements that target a common set of developmental regulatory genes from worms to humans.
    Genome Biology, Vol. 8 (02 February 2007), R15.
    by Tanya Vavouri, Klaudia Walter, Walter R Gilks, Ben Lehner, Greg Elgar
    posted to 08-smbe by smbe2008 on 2008-06-02 18:04:20 as ** along with 7 people and 2 groups indigoviolet dpollard adepace djkt sujaikumar Stew cisevol EisenLab cis-regulatory-evolution
  • Phylocomposer and phylodirector: analysis and visualization of transducer indel models
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3263-3264.
    by Ian Holmes
    posted to 08-smbe by smbe2008 on 2008-06-02 18:00:28 as ** along with 3 people balicea djkt ryanraaum
  • MATLIGN: a motif clustering, comparison and matching tool
    BMC Bioinformatics, Vol. 8 (08 June 2007), 189.
    by Matti Kankainen, Ari Loytynoja
    posted to 08-smbe by smbe2008 on 2008-06-02 17:55:23 as ** along with 3 people and 1 group xili03 isimpson idonaldson BergmanLab
  • Recent Evolutions of Multiple Sequence Alignment Algorithms
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123.
    by Cédric Notredame
    posted to 08-smbe by smbe2008 on 2008-06-02 17:54:16 as read along with 10 people and 2 groups giovenko mdimmic rvosa timflutre stajich zwang cabbagezs groepl yoanjacquemin marti Bioinformatics FAB-lab
  • Reduced efficacy of selection in regions of the Drosophila genome that lack crossing over
    Genome Biology, Vol. 8 (06 February 2007), R18.
    by Penelope R Haddrill, Daniel L Halligan, Dimitris Tomaras, Brian Charlesworth
    posted to 08-smbe by smbe2008 on 2008-06-02 17:52:43 as ** along with 3 people and 2 groups dpollard djkt cisevol EisenLab cis-regulatory-evolution
  • Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila
    Proceedings of the National Academy of Sciences (1 April 2008), 0710892105.
    by Steffen Beisswanger, Wolfgang Stephan
    posted to 08-smbe by smbe2008 on 2008-06-02 17:52:13 as ** along with 3 people maximilianh oelemento gjuggler
  • Live Hot, Die Young: Transmission Distortion in Recombination Hotspots
    PLoS Genetics, Vol. 3, No. 3. (1 March 2007), e35.
    by Graham Coop, Simon R Myers
    posted to 08-smbe by smbe2008 on 2008-06-02 17:51:31 as ** along with 1 person and 1 group dpollard EisenLab
  • Genetics of gene expression and its effect on disease
    Nature (16 March 2008)
    by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, Amy S Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, Bragi G Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G Gislason, Tryggvi Stefansson, Bjorn G Leifsson, Unnur Thorsteinsdottir, John R Lamb, Jeffrey R Gulcher, Marc L Reitman, Augustine Kong, Eric E Schadt, Kari Stefansson
    posted to 08-smbe by smbe2008 on 2008-06-02 17:48:37 as ** along with 12 people and 1 group echinotrix Borelli jyuh natstreet sanchezbuelna djkt lp2 jo_davies shikin caseybrown ptrobajo vplagnol GeneGo
  • Sequence Variants in the RNF212 Gene Associate with Genome-Wide Recombination Rate
    Science, Vol. 319, No. 5868. (7 March 2008), pp. 1398-1401.
    by Augustine Kong, Gudmar Thorleifsson, Hreinn Stefansson, Gisli Masson, Agnar Helgason, Daniel F Gudbjartsson, Gudrun M Jonsdottir, Sigurjon A Gudjonsson, Sverrir Sverrisson, Theodora Thorlacius, Aslaug Jonasdottir, Gudmundur A Hardarson, Stefan T Palsson, Michael L Frigge, Jeffrey R Gulcher, Unnur Thorsteinsdottir, Kari Stefansson
    posted to 08-smbe by smbe2008 on 2008-06-02 17:48:17 as ** along with 1 person djkt
  • Large scale genotype-phenotype correlation analysis based on phylogenetic trees.
    Bioinformatics (31 January 2007)
    by Farhat Habib, Andrew D D Johnson, Ralf Bundschuh, Daniel Janies
    posted to 08-smbe by smbe2008 on 2008-06-02 17:31:41 as ** along with 4 people farhat balicea djkt shigepong
  • Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence
    Nucl. Acids Res., Vol. 36, No. 6. (1 April 2008), pp. 1913-1927.
    by Gilly Padalon-Brauch, Ruth Hershberg, Maya Elgrably-Weiss, Kobi Baruch, Ilan Rosenshine, Hanah Margalit, Shoshy Altuvia
    posted to 08-smbe by smbe2008 on 2008-06-02 17:30:53 as ** along with 1 person eskay
  • Exploring Variation in the d N /d S Ratio Among Sites and Lineages Using Mutational Mappings: Applications to the Influenza Virus
    Journal of Molecular Evolution, Vol. 65, No. 3. (2007), pp. 340-348.
    by Weiwei Zhai, Montgomery Slatkin, Rasmus Nielsen
    posted to 08-smbe by smbe2008 on 2008-06-02 17:27:29 as ** along with 1 person stevanspringer
  • GENETICS: Why Genomes in Pieces?
    Science, Vol. 318, No. 5849. (19 October 2007), pp. 405-407.
    by Laura F Landweber
    posted to 08-smbe by smbe2008 on 2008-06-02 17:24:22 as ** along with 3 people operon gulsacan sharpton
  • Long-term evolution of transposable elements
    Proceedings of the National Academy of Sciences (26 November 2007), 0705238104.
    by Arnaud Le Rouzic, Thibaud S Boutin, Pierre Capy
    posted to 08-smbe by smbe2008 on 2008-06-02 17:23:52 as ** along with 5 people balicea operon sebastien_vigneau saru hpaces
  • Genomewide Spatial Correspondence Between Nonsynonymous Divergence and Neutral Polymorphism Reveals Extensive Adaptation in Drosophila
    Genetics, Vol. 177, No. 4. (1 December 2007), pp. 2083-2099.
    by Michael J Macpherson, Guy Sella, Jerel C Davis, Dmitri A Petrov
    posted to 08-smbe by smbe2008 on 2008-06-02 17:22:48 as ** along with 3 people PetrovLab brant caseybrown
  • A novel method distinguishes between mutation rates and fixation biases in patterns of single-nucleotide substitution.
    Journal of molecular evolution, Vol. 62, No. 2. (February 2006), pp. 168-175.
    by M Lipatov, PF Arndt, T Hwa, DA Petrov
    posted to 08-smbe by smbe2008 on 2008-06-02 17:22:02 as ** along with 1 person PetrovLab
  • Transposable elements and the evolution of regulatory networks.
    Nat Rev Genet (27 March 2008)
    by Cédric Feschotte
    posted to 08-smbe by smbe2008 on 2008-06-02 17:20:52 as ** along with 9 people and 1 group timflutre pradiptaray eskay roys cmzmasek jonsta247 djkt bootsy idonaldson BergmanLab
  • Strong Variations of Mitochondrial Mutation Rate across Mammals--the Longevity Hypothesis
    Mol Biol Evol, Vol. 25, No. 1. (1 January 2008), pp. 120-130.
    by Benoit Nabholz, Sylvain Glemin, Nicolas Galtier
    posted to 08-smbe by smbe2008 on 2008-06-02 17:15:37 as ** along with 4 people and 1 group rvosa stevanspringer aprasad renatomilani FAB-lab
  • Genome-wide survey for biologically functional pseudogenes.
    PLoS Comput Biol, Vol. 2, No. 5. (May 2006)
    by O Svensson, L Arvestad, J Lagergren
    posted to 08-smbe by smbe2008 on 2008-06-02 16:58:13 as ** along with 3 people and 2 groups renatomilani bsmagic cjeans Bioinformatics bioinplant
  • Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms.
    J Exp Zoolog B Mol Dev Evol (12 July 2006)
    by Christian Roth, Shruti Rastogi, Lars Arvestad, Katharina Dittmar, Sara Light, Diana Ekman, David A A Liberles
    posted to 08-smbe by smbe2008 on 2008-06-02 16:55:20 as ** along with 6 people zhlei operon bjorns treangen signalduplication LouisKa
  • The Origin and Evolution of tRNA Inferred from Phylogenetic Analysis of Structure
    Journal of Molecular Evolution, Vol. 66, No. 1. (24 January 2008), pp. 21-35.
    by Feng-Jie Sun, Gustavo Caetano-Anollés
    posted to 08-smbe by smbe2008 on 2008-06-02 16:54:16 as ** along with 1 person msierk
  • Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome
    Nature Genetics, Vol. 39, No. 1. (10 December 2006), pp. 126-130.
    by Jianbing Mu, Philip Awadalla, Junhui Duan, Kate M Mcgee, Jon Keebler, Karl Seydel, Gilean AT Mcvean, Xin-Zhuan Su
    posted to 08-smbe by smbe2008 on 2008-06-02 16:53:30 as ** along with 5 people fernan becarmson shigepong GeeSharpMinor xingxu
  • Structural polymorphism and diversifying selection on the pregnancy malaria vaccine candidate VAR2CSA
    Molecular and Biochemical Parasitology, Vol. 155, No. 2. (October 2007), pp. 103-112.
    by Joseph Bockhorst, Fangli Lu, Joel H Janes, Jon Keebler, Benoit Gamain, Philip Awadalla, Xin-Zhuan Su, Ram Samudrala, Nebojsa Jojic, Joseph D Smith
    posted to 08-smbe by smbe2008 on 2008-06-02 16:53:03 as **
  • Whole mtDNA Genome Sequence Analysis of Ancient African Lineages.
    Mol Biol Evol (28 December 2006)
    by Mary Katherine K Gonder, Holly M M Mortensen, Floyd A A Reed, Alexandra de Sousa, Sarah A A Tishkoff
    posted to 08-smbe by smbe2008 on 2008-06-02 16:52:02 as ** along with 2 people and 2 groups Archaeogenetics dchughes G4ID Genetics-of-Gambling
  • Do mosquitoes filter the access of Plasmodium cytochrome b lineages to an avian host?
    Molecular Ecology, Vol. 17, No. 10. (May 2008), pp. 2552-2561.
    by Andrea B Gager, Rosario DEL Loaiza, E Jos, Donald C Dearborn, Eldredge Bermingham
    posted to 08-smbe by smbe2008 on 2008-06-02 16:50:11 as **
  • Inferring Selection in Partially Sequenced Regions
    Mol Biol Evol (28 December 2007), msm273.
    by Jeffrey D Jensen, Kevin R Thornton, Charles F Aquadro
    posted to 08-smbe by smbe2008 on 2008-06-02 16:48:37 as ** along with 2 people and 1 group djkt dmc Durbin group
  • Synonymous Codon Usage in Escherichia coli: Selection for Translational Accuracy
    Molecular Biology and Evolution, Vol. 24, No. 2. (February 2007), pp. 374-381.
    by Stoletzki, Nina, Eyre-Walker, Adam
    posted to 08-smbe by smbe2008 on 2008-06-02 16:47:22 as ** along with 4 people bpcusack gjuggler operon michaelbarton
  • Insertion/Deletion and Nucleotide Polymorphism Data Reveal Constraints in Drosophila melanogaster Introns and Intergenic Regions
    Genetics, Vol. 169, No. 3. (1 March 2005), pp. 1521-1527.
    by Lino Ometto, Wolfgang Stephan, David De Lorenzo
    posted to 08-smbe by smbe2008 on 2008-06-02 16:45:22 as ** along with 2 people and 1 group penka cisevol Nie
  • Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization
    BMC Evolutionary Biology, Vol. 8 (08 February 2008), 43.
    by Frederic JJ Chain, Dora Ilieva, Ben J Evans
    posted to 08-smbe by smbe2008 on 2008-06-02 16:43:36 as **
  • Five Drosophila Genomes Reveal Nonneutral Evolution and the Signature of Host Specialization in the Chemoreceptor Superfamily
    Genetics, Vol. 177, No. 3. (1 November 2007), pp. 1395-1416.
    by Carolyn S Mcbride, Roman J Arguello, Brian C O'Meara
    posted to 08-smbe by smbe2008 on 2008-06-02 16:42:51 as **
  • Positional Conservation of Clusters of Overlapping Promoter-Like Sequences in Enterobacterial Genomes
    Molecular Biology and Evolution, Vol. 23, No. 5. (15 May 2006), pp. 997-1010.
    by Araceli M Huerta, Julio Collado-Vides, Pilar M Francino
    posted to 08-smbe by smbe2008 on 2008-06-02 16:40:44 as ** along with 1 person discreteonyxorb
  • Discrimination and scoring using small sets of genes for two-sample microarray data
    Mathematical Biosciences, Vol. 205, No. 2. (February 2007), pp. 195-203.
    by Gilles Guillot, Maja Olsson, Mikael Benson, Mats Rudemo
    posted to 08-smbe by smbe2008 on 2008-06-02 16:22:00 as ** along with 1 person karfunkel
  • Recombination and base composition: the case of the highly self-fertilizing plant Arabidopsis thaliana.
    Genome Biol, Vol. 5, No. 7. (2004)
    by G Marais, B Charlesworth, SI Wright
    posted to 08-smbe by smbe2008 on 2008-06-02 16:20:27 as ** along with 1 person timflutre
  • Selection against spurious promoter motifs correlates with translational efficiency across bacteria.
    PLoS ONE, Vol. 2, No. 1. (2007)
    by JL Froula, MP Francino
    posted to 08-smbe by smbe2008 on 2008-06-02 16:19:20 as **
  • Translational control of intron splicing in eukaryotes
    Nature, Vol. 451, No. 7176. (January 2008), pp. 359-362.
    by Olivier Jaillon, Khaled Bouhouche, Jean F Gout, Jean M Aury, Benjamin Noel, Baptiste Saudemont, Mariusz Nowacki, Vincent Serrano, Betina M Porcel, Beatrice Segurens, Anne Le Mouel, Gersende Lepere, Vincent Schachter, Mireille Betermier, Jean Cohen, Patrick Wincker, Linda Sperling, Laurent Duret, Eric Meyer
    posted to 08-smbe by smbe2008 on 2008-06-02 15:53:02 as **
  • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    Nature Genetics, Vol. 39, No. 4. (March 2007), pp. 457-466.
    by Michael Weber, Ines Hellmann, Michael B Stadler, Liliana Ramos, Svante Pääbo, Michael Rebhan, Dirk Schübeler
    posted to 08-smbe by smbe2008 on 2008-06-02 15:53:02 as **
  • Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencing
    J. Virol., Vol. 82, No. 8. (April 2008), pp. 3952-3970.
    by Jesus, Elizabeth Bailes, Kimmy T Pham, Maria G Salazar, Brad M Guffey, Brandon F Keele, Cynthia A Derdeyn, Paul Farmer, Eric Hunter, Susan Allen, Olivier Manigart, Joseph Mulenga, Jeffrey A Anderson, Ronald Swanstrom, Barton F Haynes, Gayathri S Athreya, Bette T Korber, Paul M Sharp, George M Shaw, Beatrice H Hahn
    posted to 08-smbe by smbe2008 on 2008-06-02 15:53:02 as **
  • A genome-wide approach to identifying novel-imprinted genes.
    Hum Genet, Vol. 122, No. 6. (January 2008), pp. 625-634.
    by KS Pollard, D Serre, X Wang, H Tao, E Grundberg, TJ Hudson, AG Clark, K Frazer
    posted to 08-smbe by smbe2008 on 2008-06-02 15:53:01 as ** along with 1 person bpcusack
  • PhylomeDB: a database for genome-wide collections of gene phylogenies.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008)
    by Huerta J Cepas, A Bueno, J Dopazo, T Gabaldón
    posted to 08-smbe by smbe2008 on 2008-06-02 15:53:01 as **
  • Global analysis of alternative splicing differences between humans and chimpanzees
    Genes Dev. (October 2007)
    by John A Calarco, Yi Xing, Mario Caceres, Joseph P Calarco, Xinshu Xiao, Qun Pan, Christopher Lee, Todd M Preuss, Benjamin J Blencowe
    posted to 08-smbe by smbe2008 on 2008-06-02 15:53:01 as **
  • The Inverse Relationship Between Evolutionary Rate and Age of Mammalian Genes Is an Artifact of Increased Genetic Distance with Rate of Evolution and Time of Divergence
    Molecular Biology and Evolution, Vol. 23, No. 1. (January 2006), pp. 1-3.
    by Eran Elhaik, Niv Sabath
    posted to 08-smbe by smbe2008 on 2008-06-02 15:53:01 as **
  • GENOMICS: Lining Up to Avoid Bias
    Science, Vol. 319, No. 5862. (January 2008), pp. 416-417.
    by Antonis Rokas
    posted to 08-smbe by smbe2008 on 2008-06-02 15:53:01 as **
  • Evolution of Multicellularity (Choanflagelates)
    Annual Review of Genetics, Vol. 42, No. 1. (2008)
    by Antonis Rokas
    posted to 08-smbe by smbe2008 on 2008-06-02 15:53:01 as **
  • Mutation Accumulation Studies in Evolutionary Genetics
    Annual Review of Ecology, Evolution, and Systematics, Vol. 39, No. 1. (2008)
    by Peter D Keightley
    posted to 08-smbe by smbe2008 on 2008-06-02 15:53:01 as **
  • Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila
    Nature, Vol. 445, No. 7123. (January 2007), pp. 82-85.
    by Cathy H Liautard, Mark Dorris, Xulio Maside, Steven Macaskill, Daniel L Halligan, Brian Charlesworth, Peter D Keightley
    posted to 08-smbe by smbe2008 on 2008-06-02 15:53:01 as **
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