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di shigepong networkestimation [52 articles]

Articoli aggiunti di recente alla biblioteca di shigepong classificati sotto il tag networkestimation. You can also see everyone's networkestimation.
  • Molecular Network and Chromosomal Clustering of Genes Involved in Synaptic Plasticity in the Hippocampus
    J. Biol. Chem., Vol. 281, No. 40. (6 October 2006), pp. 30195-30211.
    by Chang S Park, Ruomu Gong, Joshua Stuart, Shao-Jun Tang
    posted to networkestimation geneexpression clustering by shigepong on 2008-08-16 07:07:23 as ****
  • The discovery of structural form.
    Proceedings of the National Academy of Sciences of the United States of America (31 July 2008)
    by Charles Kemp, Joshua B B Tenenbaum
    posted to system science networkestimation by shigepong on 2008-08-04 12:25:18 as ***** along with 13 people and 1 group jyuh jago markusd rsantana jmchauvet uhhhhhhhhhhm markstoehr A_Olympia deubel jborn tbloomf OriginalLurch tmmurali logics of knowledge
  • Multiple tests of association with biological annotation metadata
    (20 May 2008)
    by Sandrine Dudoit, Sündüz Keleş, Mark J van der Laan
    posted to networkestimation fdr by shigepong on 2008-05-22 02:06:23 as ****
  • GraphWeb: mining heterogeneous biological networks for gene modules with functional significance.
    Nucleic acids research (6 May 2008)
    by Jüri Reimand, Laur Tooming, Hedi Peterson, Priit Adler, Jaak Vilo
    posted to networkestimation by shigepong on 2008-05-09 09:52:23 as **** along with 4 people ptrobajo jyuh maralena pinney
  • The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks
    BMC Bioinformatics, Vol. 9 (02 May 2008), 227.
    by Anatolij P Potapov, Bjorn Goemann, Edgar Wingender
    posted to networkestimation by shigepong on 2008-05-07 09:59:54 as **** along with 2 people joaocarrico bootsy
  • ChIPCodis: Mining complex regulatory systems in yeast by concurrent enrichment analysis of Chip-on-chip data.
    Bioinformatics (12 March 2008)
    by Federico Abascal, Pedro Carmona-Saez, Jose-Maria M Carazo, Alberto Pascual-Montano
    posted to causality networkestimation by shigepong on 2008-03-16 09:12:30 as ****
  • Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models.
    Bioinformatics (21 February 2008)
    by Osamu Hirose, Ryo Yoshida, Seiya Imoto, Rui Yamaguchi, Tomoyuki Higuchi, D Stephen S Charnock-Jones, Cristin Print, Satoru Miyano
    posted to networkestimation by shigepong on 2008-02-24 08:42:51 as ** along with 2 people jyuh bertelsen
  • Quantitative analysis of robustness and fragility in biological networks based on feedback dynamics.
    Bioinformatics (19 February 2008)
    by Yung-Keun K Kwon, Kwang-Hyun H Cho
    posted to networkestimation networkphysics by shigepong on 2008-02-23 01:52:15 as ** along with 3 people jyuh grahamc bootsy
  • Detecting hierarchical structure in molecular characteristics of disease using transitive approximations of directed graphs.
    Bioinformatics (19 February 2008)
    by Juby Jacob, Marcel Jentsch, Dennis Kostka, Stefan Bentink, Rainer Spang
    posted to networkestimation by shigepong on 2008-02-23 01:52:06 as ** along with 1 person ptrobajo
  • Estimating Large Scale Signaling Networks through Nested Effect Models with Intervention Effects from Microarray Data.
    Bioinformatics (28 January 2008)
    by Holger Fröhlich, Mark Fellmann, Holger Sültmann, Annemarie Poustka, Tim Beissbarth
    posted to networkestimation by shigepong on 2008-02-03 02:35:10 as ** along with 2 people czeller jyuh
  • Inferring gene expression dynamics via functional regression analysis.
    BMC Bioinformatics, Vol. 9, No. 1. (28 January 2008)
    by Hans-Georg G Muller, Jeng-Min M Chiou, Xiaoyan Leng
    posted to networkestimation by shigepong on 2008-02-03 02:25:04 as ** along with 1 person jyuh
  • Reconstruction of genetic association networks from microarray data: A partial least squares approach.
    Bioinformatics (18 January 2008)
    by Vasyl Pihur, Somnath Datta, Susmita Datta
    posted to furuya networkestimation by shigepong on 2008-01-23 07:21:40 as ** along with 6 people winterschlaefer jyuh cannin jfr aconesa sotacam
  • Function approximation approach to the inference of reduced NGnet models of genetic networks
    BMC Bioinformatics, Vol. 9 (14 January 2008), 23.
    by Shuhei Kimura, Katsuki Sonoda, Soichiro Yamane, Hideki Maeda, Koki Matsumura, Mariko Hatakeyama
    posted to networkestimation by shigepong on 2008-01-21 13:45:44 as ** along with 1 person jyuh
  • Supervised inference of gene-regulatory networks
    BMC Bioinformatics, Vol. 9 (04 January 2008), 2.
    by Cuong C To, Jiri Vohradsky
    posted to furuya networkestimation by shigepong on 2008-01-09 08:56:02 as ** along with 2 people jyuh gracio
  • Generating confidence intervals on biological networks
    BMC Bioinformatics, Vol. 8 (30 November 2007), 467.
    by Thomas Thorne, Michael PH Stumpf
    posted to networkestimation by shigepong on 2007-12-10 15:10:43 as ***** along with 6 people and 2 groups jyuh stajich grahamc laughcry zwang sobolevnrm baker-group Berkeley Mycology
  • Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations.
    BMC Bioinformatics, Vol. 8 Suppl 9 (2007)
    by H Kim, H Park, BL Drake
    posted to factor furuya matrixdecomposition networkestimation by shigepong on 2007-12-08 01:25:44 as ***** along with 1 person jyuh
  • Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes
    BMC Bioinformatics, Vol. 8 (02 November 2007), 427.
    by Jeff W Chou, Tong Zhou, William K Kaufmann, Richard S Paules, Pierre R Bushel
    posted to furuya microarray networkestimation by shigepong on 2007-11-08 02:58:41 as ** along with 3 people renatomilani hpaces dps
  • A systems biology approach for pathway level analysis
    Genome Res. (4 September 2007), gr.6202607.
    by Sorin Draghici, Purvesh Khatri, Adi L Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero
    posted to networkestimation by shigepong on 2007-11-06 11:19:22 as ***** along with 15 people and 3 groups AlexanderPico heliopais tmmurali dragonrez jfr gurkanbebek grahamc zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder Bioinformatics ParkinsonLab_at_MaRS OPIG
  • A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 794-797.
    by Joel Smith, Christina Theodoris, Eric H Davidson
    posted to networkestimation by shigepong on 2007-11-05 23:46:26 as ***** along with 5 people and 1 group cwbrown lshaw zwang heliopais hpaces EisenLab
  • Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e206.
    by Tom C Freeman, Leon Goldovsky, Markus Brosch, Stijn van Dongen, Pierre Mazière, Russell J Grocock, Shiri Freilich, Janet Thornton, Anton J Enright
    posted to miroarray networkestimation by shigepong on 2007-11-01 09:24:17 as **** along with 6 people jyuh jfr sebastien_vigneau giovanni heliopais waszak
  • Empirical Multiscale Networks of Cellular Regulation.
    PLoS Comput Biol, Vol. 3, No. 10. (19 October 2007)
    by Benjamin de Bivort, Sui Huang, Yaneer Bar-Yam
    posted to furuya multiscale networkestimation by shigepong on 2007-10-25 08:48:37 as ***** along with 2 people and 2 groups mattjb jyuh DSTO-CAS ComplexAdaptiveSystems
  • Network analysis of oncogenic Ras activation in cancer.
    Science, Vol. 318, No. 5849. (19 October 2007), pp. 463-467.
    by EC Stites, PC Trampont, Z Ma, KS Ravichandran
    posted to cancer networkestimation by shigepong on 2007-10-21 09:56:41 as ***** along with 3 people jackjackjjj zwang oelemento
  • Extracting Three-way Gene Interactions from Microarray Data.
    Bioinformatics (5 October 2007)
    by Jiexin Zhang, Yuan Ji, Li Zhang
    posted to microarrayimage networkestimation by shigepong on 2007-10-10 11:11:52 as **** along with 3 people tmmurali jfr waszak
  • Current approaches to gene regulatory network modelling.
    BMC Bioinformatics, Vol. 8 Suppl 6 (2007)
    by T Schlitt, A Brazma
    posted to furuya networkestimation by shigepong on 2007-10-04 06:37:27 as ** along with 4 people bertelsen kengg ramakris nicholasflann
  • From biophysics to evolutionary genetics: statistical aspects of gene regulation.
    BMC Bioinformatics, Vol. 8 Suppl 6 (2007)
    by M Lässig
    posted to networkestimation by shigepong on 2007-10-04 06:37:18 as ** along with 3 people bpcusack bertelsen jyuh
  • Inferring cellular networks - a review
    BMC Bioinformatics, Vol. 8, No. Suppl 6. (2007)
    by Florian Markowetz, Rainer Spang
    posted to networkestimation by shigepong on 2007-10-04 06:37:10 as ** along with 6 people czeller bertelsen jyuh tmmurali dejori heliopais
  • Finding regulatory elements and regulatory motifs: a general probabilistic framework.
    BMC Bioinformatics, Vol. 8 Suppl 6 (2007)
    by E van Nimwegen
    posted to furuya networkestimation by shigepong on 2007-10-04 06:37:04 as ** along with 1 person maximilianh
  • Transcriptional regulation at a glance.
    BMC Bioinformatics, Vol. 8 Suppl 6 (2007)
    by S Sperling
    posted to networkestimation by shigepong on 2007-10-04 06:36:54 as ** along with 2 people brant jyuh
  • ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context.
    BMC Bioinformatics, Vol. 7 Suppl 1 (2006)
    by AA Margolin, I Nemenman, K Basso, C Wiggins, G Stolovitzky, R Dalla Favera, A Califano
    posted to furuya networkestimation by shigepong on 2007-10-02 16:05:12 as ** along with 5 people kentsis tmmurali jfr natstreet heliopais
  • Inferring Transcriptional Regulatory Networks from High-throughput Data.
    Bioinformatics (22 September 2007)
    by Rui-Sheng S Wang, Yong Wang, Xiang-Sun S Zhang, Luonan Chen
    posted to furuya networkestimation by shigepong on 2007-09-26 07:07:00 as ** along with 4 people wnpx rdiaz sebastien_vigneau cabbagezs
  • A framework for significance analysis of gene expression data using dimension reduction methods
    BMC Bioinformatics, Vol. 8 (18 September 2007), 346.
    by Lars Gidskehaug, Endre Anderssen, Arnar Flatberg, Bjorn K Alsberg
    posted to microarray networkestimation by shigepong on 2007-09-21 08:34:38 as **
  • Log-linear model based multifactor dimensionality reduction method to detect gene-gene interactions.
    Bioinformatics (14 September 2007)
    by Seung Yeoun Y Lee, Yujin Chung, Robert C C Elston, Youngchul Kim, Taesung Park
    posted to causality furuya geneselection networkestimation by shigepong on 2007-09-19 06:47:56 as ***** along with 2 people jyuh rdiaz
  • A novel non-overlapping bi-clustering algorithm for network generation using Living Cell Array data.
    Bioinformatics (7 September 2007)
    by Yang E, P T T Foteinou, K R R King, M L L Yarmush, I P P Androulakis
    posted to clustering furuya networkestimation by shigepong on 2007-09-12 06:46:41 as **** along with 1 person rdiaz
  • Mining Biological Networks for Unknown Pathways.
    Bioinformatics (30 August 2007)
    by Ali Cakmak, Gultekin Ozsoyoglu
    posted to networkestimation by shigepong on 2007-09-05 07:30:58 as ** along with 7 people mdstobbe jyuh tmmurali bluto cabbagezs idonaldson acakmak
  • A statistical method to incorporate biological knowledge for generating testable novel gene regulatory interactions from microarray experiments
    BMC Bioinformatics, Vol. 8 (29 August 2007), 317.
    by Peter Larsen, Eyad Almasri, Guanrao Chen, Yang Dai
    posted to microarray networkestimation by shigepong on 2007-09-01 06:38:38 as ***** along with 2 people jyuh jfr
  • Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory
    BMC Bioinformatics, Vol. 8 (14 August 2007), 299.
    by Feng Luo, Yunfeng Yang, Jianxin Zhong, Haichun Gao, Latifur Khan, Dorothea K Thompson, Jizhong Zhou
    posted to microarray networkestimation by shigepong on 2007-08-19 14:35:55 as ***** along with 2 people jyuh birdsky
  • Bayesian inference for dynamic transcriptional regulation; the Hes1 system as a case study.
    Bioinformatics (28 July 2007)
    by Elizabeth A A Heron, Bärbel Finkenstädt, David A A Rand
    posted to dynamics networkestimation by shigepong on 2007-08-01 07:18:30 as *****
  • Automatic genome-wide reconstruction of phylogenetic gene trees.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev
    posted to networkestimation by shigepong on 2007-07-27 01:45:53 as ** along with 3 people and 1 group tharris stajich seitentaisei Berkeley Mycology
  • Supervised reconstruction of biological networks with local models.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by Kevin Bleakley, Gérard Biau, Jean-Philippe P Vert
    posted to networkestimation by shigepong on 2007-07-27 01:43:37 as **
  • A graph-based approach to systematically reconstruct human transcriptional regulatory modules.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by X Yan, MR Mehan, Y Huang, MS Waterman, PS Yu, XJ Zhou
    posted to networkestimation by shigepong on 2007-07-27 01:43:28 as ** along with 3 people tmmurali dragonrez jfr
  • Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Curtis Huttenhower, Avi Flamholz, Jessica Landis, Sauhard Sahi, Chad Myers, Kellen Olszewski, Matthew Hibbs, Nathan Siemers, Olga Troyanskaya, Hilary Coller
    posted to networkestimation by shigepong on 2007-07-15 08:14:25 as **** along with 3 people jfr GeeSharpMinor julesyoo
  • Bayesian Orthogonal Least Squares (BOLS) algorithm for reverse engineering of gene regulatory networks
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Chang S Kim
    posted to matrixdecomposition networkestimation by shigepong on 2007-07-15 08:13:43 as ***** along with 4 people jyuh rdiaz frohike zwang
  • Mining co-regulated gene profiles for the detection of functional associations in gene expression data.
    Bioinformatics (30 May 2007)
    by Attila Gyenesei, Ulrich Wagner, Simon Barkow-Oesterreicher, Etzard Stolte, Ralph Schlapbach
    posted to microarray networkestimation by shigepong on 2007-06-02 07:21:56 as ***** along with 3 people renatomilani ptrobajo isimpson
  • Robust detection and verification of linear relationships to generate metabolic networks using estimates of technical errors
    BMC Bioinformatics, Vol. 8 (21 May 2007), 162.
    by Frank Kose, Jan Budzies, Matthias Holschneider, Oliver Fiehn
    posted to networkestimation by shigepong on 2007-05-24 09:18:54 as **** along with 2 people JeremyZucker jhatrimatri
  • Network motifs: theory and experimental approaches
    Nature Reviews Genetics, Vol. 8, No. 6., pp. 450-461.
    by Uri Alon
    posted to networkestimation by shigepong on 2007-05-21 01:32:07 as **** along with 14 people and 3 groups Borelli icases aalibes cmmorel jtaylor dbikard margaritis zwang grinfish Pascalichouchou xingxu karfunkel vietanh0 haarcuba TNT Centre de Recherches Interdisciplinaires SynBioSys
  • Learning causal networks from systems biology time course data: an effective model selection procedure for the vector autoregressive process.
    BMC Bioinformatics, Vol. 8 Suppl 2 (2007)
    by Rainer Opgen-Rhein, Korbinian Strimmer
    posted to causality furuya networkestimation timeseries by shigepong on 2007-05-13 07:32:57 as *****
  • Inferring biological networks with output kernel trees.
    BMC Bioinformatics, Vol. 8 Suppl 2 (2007)
    by P Geurts, N Touleimat, M Dutreix, F d'Alché-Buc
    posted to networkestimation by shigepong on 2007-05-13 07:32:24 as *****
  • Validating module network learning algorithms using simulated data
    BMC Bioinformatics, Vol. 8, No. Suppl 2. (2007)
    by Tom Michoel, Steven Maere, Eric Bonnet, Anagha Joshi, Yvan Saeys, Tim Van den Bulcke, Koenraad Van Leemput, Piet van Remortel, Martin Kuiper, Kathleen Marchal, Yves Van de Peer
    posted to module networkestimation by shigepong on 2007-05-13 07:31:49 as ***** along with 5 people and 2 groups srp33 mattjb ajgentles erbon vietanh0 DSTO-CAS ComplexAdaptiveSystems
  • Factor analysis for gene regulatory networks and transcription factor activity profiles
    BMC Bioinformatics, Vol. 8 (23 February 2007), 61.
    by Iosifina Pournara, Lorenz Wernisch
    posted to factor networkestimation by shigepong on 2007-02-28 15:43:22 as *** along with 6 people ihpark heliopais jyuh lp2 hms kyriakos
  • Boolean networks using the chi-square test for inferring large-scale gene regulatory networks
    BMC Bioinformatics, Vol. 8 (01 February 2007), 37.
    by Haseong Kim, Jae K Lee, Taesung Park
    posted to networkestimation by shigepong on 2007-02-04 16:07:57 as ** along with 1 person heliopais
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