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di sgoetz library [97 articles]

Articoli aggiunti di recente nella biblioteca di sgoetz .
  • Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics.
    International journal of plant genomics, Vol. 2008 (2008)
    by A Conesa, S Götz
    posted to no-tag by sgoetz on 2008-06-19 16:15:39 as ** along with 1 person gilmour70
  • Improved Detection of Overrepresentation of Gene-Ontology Annotations with Parent-Child Analysis.
    Bioinformatics (11 September 2007)
    by Steffen Grossmann, Sebastian Bauer, Peter N N Robinson, Martin Vingron
    posted to no-tag by sgoetz on 2008-06-09 21:55:42 as ** along with 5 people marck RamuAnandakrishnan tmmurali grahamc heliopais
  • Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
    Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1600-1607.
    by Alexa, Adrian, Rahnenfuhrer, Jorg, Lengauer, Thomas
    posted to no-tag by sgoetz on 2008-06-09 21:55:14 as ** along with 3 people and 2 groups marck yas ealloza T_lab BioinfoCIPF
  • GEPAS, a web-based tool for microarray data analysis and interpretation
    Nucl. Acids Res. (28 May 2008), gkn303.
    by Joaquin Tarraga, Ignacio Medina, Jose Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fatima Al-Shahrour, Susana Vegas-Azcarate, Stefan Goetz, Pablo Escobar, Francisco Garcia-Garcia, Ana Conesa, David Montaner, Joaquin Dopazo
    posted to no-tag by sgoetz on 2008-06-02 14:50:49 as **
  • Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments
    Nucl. Acids Res. (31 May 2008), gkn318.
    by Fatima Al-Shahrour, Jose Carbonell, Pablo Minguez, Stefan Goetz, Ana Conesa, Joaquin Tarraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquin Dopazo
    posted to no-tag by sgoetz on 2008-06-02 12:17:49 as ** along with 2 people balicea neils
  • BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005), pp. W460-W464.
    by F Al-Shahrour, P Minguez, JM Vaquerizas, L Conde, J Dopazo
    posted to no-tag by sgoetz on 2008-05-20 18:12:53 as ** along with 4 people and 2 groups RMGraze marcius eweaver Garamonfok BioinfoCIPF SGU-CIPF
  • FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 578-580.
    by Fatima Al-Shahrour, Ramon Diaz-Uriarte, Joaquin Dopazo
    posted to no-tag by sgoetz on 2008-05-20 18:12:09 as ** along with 5 people ellakat aalibes RMGraze macavity1g Garamonfok
  • SIMAP--structuring the network of protein similarities.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008), pp. D289-D292.
    by T Rattei, P Tischler, R Arnold, F Hamberger, J Krebs, J Krumsiek, B Wachinger, V Stümpflen, W Mewes
    posted to simap2go by sgoetz on 2008-05-19 15:13:47 as **
  • High-throughput functional annotation and data mining with the Blast2GO suite
    Nucl. Acids Res. (29 April 2008), gkn176.
    by Stefan Götz, Juan M Garcia-Gomez, Javier Terol, Tim D Williams, Shivashankar H Nagaraj, Maria J Nueda, Montserrat Robles, Manuel Talon, Joaquin Dopazo, Ana Conesa
    posted to my_papers gene_ontology_tool blast2go b2g annotation by sgoetz on 2008-05-14 18:11:39 as ** along with 2 people barriot jyuh
  • Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics
    International Journal of Plant Genomics, Vol. 2008, No. 2008. (2008), pp. 1-12.
    by Ana Conesa, Stefan Götz
    posted to my_papers blast2go b2g annotation by sgoetz on 2008-05-14 13:13:38 as **
  • BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks
    Bioinformatics (16 November 2007), btm553.
    by Andrei Zinovyev, Eric Viara, Laurence Calzone, Emmanuel Barillot
    posted to interactome by sgoetz on 2007-11-27 10:47:12 as ** along with 5 people jyuh jfr dullhunk grahamc idonaldson
  • Estimating node degree in bait-prey graphs
    Bioinformatics (19 November 2007), btm565.
    by Denise Scholtens, Tony Chiang, Wolfgang Huber, Robert Gentleman
    posted to no-tag by sgoetz on 2007-11-27 10:42:12 as ** along with 1 person cjeans
  • Archetype-Based Semantic Integration and Standardization of Clinical Data
    Engineering in Medicine and Biology Society, 2006. EMBS '06. 28th Annual International Conference of the IEEE (2006), pp. 5141-5144.
    by David Moner, Jose A Maldonado, Diego Bosca, Jesualdo T Fernandez, Carlos Angulo, Pere Crespo, Pedro J Vivancos, Montserrat Robles
    posted to bio-ontologies by sgoetz on 2007-11-17 15:31:29 as **
  • The Unified Medical Language System (UMLS): integrating biomedical terminology.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by O Bodenreider
    posted to bio-ontologies by sgoetz on 2007-11-17 15:28:49 as ** along with 7 people and 2 groups irenas kuhn wnpx bundschu josepe kkaiser leechuck dbk-lab IEG
  • Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
    Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11.
    by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers
    posted to annotation by sgoetz on 2007-11-16 13:05:34 as ** along with 17 people and 3 groups chasmand snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller grahamc iris_2001 shikin s041629 pmendes mtruksa kdl EBI-regulation GeneGo
  • A meta-analysis of kidney microarray datasets: investigation of cytokine gene detection and correlation with rt-PCR and detection thresholds
    BMC Genomics, Vol. 8 (30 March 2007), 88.
    by Walter D Park, Mark D Stegall
    posted to phenomodelcite by sgoetz on 2007-11-15 11:52:51 as **
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to phenomodelcite by sgoetz on 2007-11-15 11:29:52 as ** along with 11 people and 2 groups nedwards jo_davies maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim wilbur GeschwindLab Indigene
  • The Gene Ontology (GO) database and informatics resource.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by MA Harris, J Clark, A Ireland, J Lomax, M Ashburner, R Foulger, K Eilbeck, S Lewis, B Marshall, C Mungall, J Richter, GM Rubin, JA Blake, C Bult, M Dolan, H Drabkin, JT Eppig, DP Hill, L Ni, M Ringwald, R Balakrishnan, JM Cherry, KR Christie, MC Costanzo, SS Dwight, S Engel, DG Fisk, JE Hirschman, EL Hong, RS Nash, A Sethuraman, CL Theesfeld, D Botstein, K Dolinski, B Feierbach, T Berardini, S Mundodi, SY Rhee, R Apweiler, D Barrell, E Camon, E Dimmer, V Lee, R Chisholm, P Gaudet, W Kibbe, R Kishore, EM Schwarz, P Sternberg, M Gwinn, L Hannick, J Wortman, M Berriman, V Wood, N de la Cruz, P Tonellato, P Jaiswal, T Seigfried, R White,
    posted to bio-ontologies phenomodelcite by sgoetz on 2007-11-15 11:19:25 as ** along with 8 people and 1 group setar balajis nuke2005 benny dullhunk bundschu talponer waghsk generif_paper
  • Next station in microarray data analysis: GEPAS.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by D Montaner, J Tárraga, J Huerta-Cepas, J Burguet, JM Vaquerizas, L Conde, P Minguez, J Vera, S Mukherjee, J Valls, MA Pujana, E Alloza, J Herrero, F Al-Shahrour, J Dopazo
    posted to microarray by sgoetz on 2007-11-14 20:14:24 as * along with 5 people and 2 groups marcius tardigrade rdiaz ealloza schuylrp BioinfoCIPF SGU-CIPF
  • The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
    Nat Biotech, Vol. 25, No. 11. (November 2007), pp. 1251-1255.
    by Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J Mungall, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Nigam Shah, Patricia L Whetzel, Suzanna Lewis
    posted to bio-ontologies phenomodelcite by sgoetz on 2007-11-14 19:21:20 as ** along with 11 people and 2 groups marck dansullivanblk AlexanderPico tmmurali jfr dullhunk cjeans leechuck PunkRock sobolevnrm lenov baker-group csb_journal_club_public
  • Current Official Version of the CIDOC CRM version 4.2 of the reference document. Definition of the CIDOC Conceptual Reference Model
    (June 2005)
    by N Crofts, M Doerr, T Gill, S Stead, M Stiff
    posted to phenomodelcite by sgoetz on 2007-11-14 12:53:58 as **
  • Conceptual data modelling for bioinformatics.
    Brief Bioinform, Vol. 3, No. 2. (June 2002), pp. 166-180.
    by E Bornberg-Bauer, NW Paton
    posted to bio-ontologies phenomodelcite by sgoetz on 2007-11-14 12:46:57 as ** along with 4 people and 4 groups alanrw irenas dalloliogm angelika12 dbk-lab Web2 splicing yeast
  • Organization of heterogeneous scientific data using the EAV/CR representation.
    J Am Med Inform Assoc, Vol. 6, No. 6. (c 1999), pp. 478-493.
    by PM Nadkarni, L Marenco, R Chen, E Skoufos, G Shepherd, P Miller
    posted to bio-ontologies phenomodelcite by sgoetz on 2007-11-14 12:46:10 as **
  • PhenomicDB: a new cross-species genotype/phenotype resource
    Nucleic Acids Research, Vol. 35, No. Supplement 1. (January 2007), pp. D696-D699.
    by Groth, Philip, Pavlova, Nadia, Kalev, Ivan, Tonov, Spas, Georgiev, Georgi, Pohlenz, Hans-Dieter, Weiss, Bertram
    posted to bio-ontologies phenomodelcite by sgoetz on 2007-11-14 12:43:54 as ** along with 3 people jiny jyuh Nilza
  • Phenogo: assigning phenotypic context to gene ontology annotations with natural language processing.
    Pac Symp Biocomput (2006), pp. 64-75.
    by Y Lussier, T Borlawsky, D Rappaport, Y Liu, C Friedman
    posted to bio-ontologies phenomodelcite by sgoetz on 2007-11-14 12:41:08 as ** along with 3 people and 1 group fisherp helliontroy aconesa biomedical-nlp
  • The Rat Genome Database, update 2007--easing the path from disease to data and back again.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by SN Twigger, M Shimoyama, S Bromberg, AE Kwitek, HJ Jacob,
    posted to bio-ontologies phenomodelcite by sgoetz on 2007-11-14 12:37:21 as ** along with 2 people jyuh aconesa
  • The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information.
    Genome Biol, Vol. 6, No. 1. (2005)
    by CL Smith, CA Goldsmith, JT Eppig
    posted to bio-ontologies phenomodelcite by sgoetz on 2007-11-14 12:35:48 as ** along with 2 people leechuck aconesa
  • Using ontologies to describe mouse phenotypes.
    Genome Biol, Vol. 6, No. 1. (2005)
    by GV Gkoutos, EC Green, AM Mallon, JM Hancock, D Davidson
    posted to bio-ontologies phenomodelcite by sgoetz on 2007-11-14 12:35:04 as ** along with 2 people fisherp aconesa
  • Standards for systems biology
    Nature Reviews Genetics, Vol. 7, No. 8. (2006), pp. 593-605.
    by Alvis Brazma, Maria Krestyaninova, Ugis Sarkans
    posted to bio-ontologies phenomodelcite by sgoetz on 2007-11-14 12:34:13 as ** along with 8 people and 2 groups giovenko aalibes jfr rdiaz ronaldozhou mhucka dagmar peterli dIEMoSIRIS compneur
  • Integration of the Gene Ontology into an object-oriented architecture.
    BMC Bioinformatics, Vol. 6, No. 1. (10 May 2005)
    by Daniel Shegogue, W J Zheng
    posted to bio-ontologies by sgoetz on 2007-11-14 12:30:59 as **
  • Bio-ontologies: current trends and future directions.
    Brief Bioinform, Vol. 7, No. 3. (September 2006), pp. 256-274.
    by O Bodenreider, R Stevens
    posted to phenomodelcite by sgoetz on 2007-11-14 12:28:52 as read along with 7 people and 1 group dansullivanblk alanrw yas dullhunk ebrahim_bagheri aconesa BIBLIOma T_lab
  • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 365-371.
    by A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, C Stoeckert, J Aach, W Ansorge, CA Ball, HC Causton, T Gaasterland, P Glenisson, FC Holstege, IF Kim, V Markowitz, JC Matese, H Parkinson, A Robinson, U Sarkans, S Schulze-Kremer, J Stewart, R Taylor, J Vilo, M Vingron
    posted to phenomodelcite by sgoetz on 2007-11-14 12:27:41 as read along with 7 people and 3 groups shikin irenas setar fisherp jeremymiller aconesa katerinakal GeneGo dbk-lab GeschwindLab
  • GOSim - An R-package for computation of information theoretic GO similarities between terms and gene products
    BMC Bioinformatics, Vol. 8 (22 May 2007), 166.
    by Holger Froehlich, Nora Speer, Annemarie Poustka, Tim Beissbarth
    posted to semantic similarity by sgoetz on 2007-11-09 12:56:00 as ** along with 4 people jyuh jfr macavity1g RamuAnandakrishnan
  • Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation
    Bioinformatics, Vol. 19, No. 10. (1 July 2003), pp. 1275-1283.
    by PW Lord, RD Stevens, A Brass, CA Goble
    posted to semantic similarity by sgoetz on 2007-11-09 12:53:33 as ** along with 5 people and 2 groups j3xucite CitoJam ejmeij josemblazquez roys ilps LanguageModeling
  • A New Method to Measure the Semantic Similarity of GO Terms.
    Bioinformatics (7 March 2007)
    by James Z Z Wang, Zhidian Du, Rapeeporn Payattakool, Philip S S Yu, Chin-Fu F Chen
    posted to semantic similarity by sgoetz on 2007-11-09 12:51:47 as ** along with 8 people and 1 group jyuh jfr grahamc iris_2001 macavity1g florianleitner zwang mz2 ParkinsonLab_at_MaRS
  • FunSimMat: a comprehensive functional similarity database
    Nucl. Acids Res. (11 October 2007), gkm806.
    by Andreas Schlicker, Mario Albrecht
    posted to semantic similarity by sgoetz on 2007-11-09 12:50:39 as ** along with 2 people and 1 group jyuh sobolevnrm baker-group
  • Automated Gene Ontology annotation for anonymous sequence data.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3712-3715.
    by S Hennig, D Groth, H Lehrach
    posted to b2gpaper2 by sgoetz on 2007-11-07 17:42:31 as **
  • Comparative Metagenomics of Microbial Communities
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 554-557.
    by Susannah G Tringe, Christian von Mering, Arthur Kobayashi, Asaf A Salamov, Kevin Chen, Hwai W Chang, Mircea Podar, Jay M Short, Eric J Mathur, John C Detter, Peer Bork, Philip Hugenholtz, Edward M Rubin
    posted to b2gpaper2 by sgoetz on 2007-11-07 16:54:44 as ** along with 9 people and 2 groups mjetten sanchezbuelna vrich mcox bluto jmeppley AaronDarling azazello wenhan microbiology_nijmegen anammox
  • Probabilistic annotation of protein sequences based on functional classifications.
    BMC Bioinformatics, Vol. 6 (2005)
    by ED Levy, CA Ouzounis, WR Gilks, B Audit
    posted to annotation by sgoetz on 2007-10-30 15:18:06 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Text Detective: a rule-based system for gene annotation in biomedical texts.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by J Tamames
    posted to annotation by sgoetz on 2007-10-30 12:57:50 as ** along with 3 people and 1 group irenas johnkork gaudan dbk-lab
  • Tools for Visually Exploring Biological Networks.
    Bioinformatics (25 August 2007)
    by Matthew Suderman, Michael Hallett
    posted to networks visualization by sgoetz on 2007-10-30 09:45:31 as ** along with 12 people and 3 groups hryk AlexanderPico schuylrp jyuh icases dullhunk sebastien_vigneau grahamc cabbagezs cerami loopback007 Pao-Yang ParkinsonLab_at_MaRS TNT Cancer_Stem_Cells
  • From genomics to chemical genomics: new developments in KEGG.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by M Kanehisa, S Goto, M Hattori, KF Aoki-Kinoshita, M Itoh, S Kawashima, T Katayama, M Araki, M Hirakawa
    posted to b2gpaper2 kegg by sgoetz on 2007-10-29 13:50:33 as read along with 13 people natstreet jyuh aalibes kuhn balajis alexg eweaver tny dullhunk michC frohike incovoma yggdrasil
  • Prediction of human protein function according to Gene Ontology categories
    Bioinformatics, Vol. 19, No. 5. (22 March 2003), pp. 635-642.
    by LJ Jensen, R Gupta, HH Staerfeldt, S Brunak
    posted to annotation by sgoetz on 2007-10-26 18:30:06 as read along with 1 person larsjuhljensen
  • Automated protein function prediction--the genomic challenge.
    Brief Bioinform (23 May 2006)
    by Iddo Friedberg
    posted to annotation b2gpaper2 gene gene_ontology_tool ontology by sgoetz on 2007-10-17 17:56:24 as read along with 6 people and 3 groups tjimenez yas marcius j3xucite cdallett bootsy T_lab BioinfoCIPF SGU-CIPF
  • GOblet: a platform for Gene Ontology annotation of anonymous sequence data.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by D Groth, H Lehrach, S Hennig
    posted to annotation b2gpaper2 bioinformatics gene_ontology_tool by sgoetz on 2007-10-15 18:09:20 as **
  • GOing from functional genomics to biological significance.
    Cytogenet Genome Res, Vol. 117, No. 1-4. (2007), pp. 278-287.
    by FM McCarthy, SM Bridges, SC Burgess
    posted to annotation b2g b2gpaper2 blast2go gene_ontology_tool by sgoetz on 2007-10-15 18:01:49 as read along with 1 person and 1 group grahamc Bioinformatics
  • OntoBlast function: From sequence similarities directly to potential functional annotations by ontology terms.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3799-3803.
    by G Zehetner
    posted to annotation b2gpaper2 bioinformatics blast2go gene_ontology_tool by sgoetz on 2007-10-11 09:51:26 as read
  • JAFA: a protein function annotation meta-server.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by I Friedberg, T Harder, A Godzik
    posted to b2gpaper2 by sgoetz on 2007-10-11 09:48:38 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • New developments in the InterPro database.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by NJ Mulder, R Apweiler, TK Attwood, A Bairoch, A Bateman, D Binns, P Bork, V Buillard, L Cerutti, R Copley, E Courcelle, U Das, L Daugherty, M Dibley, R Finn, W Fleischmann, J Gough, D Haft, N Hulo, S Hunter, D Kahn, A Kanapin, A Kejariwal, A Labarga, PS Langendijk-Genevaux, D Lonsdale, R Lopez, I Letunic, M Madera, J Maslen, C McAnulla, J McDowall, J Mistry, A Mitchell, AN Nikolskaya, S Orchard, C Orengo, R Petryszak, JD Selengut, CJ Sigrist, PD Thomas, F Valentin, D Wilson, CH Wu, C Yeats
    posted to annotation b2gpaper2 bioinformatics gene_ontology_tool by sgoetz on 2007-10-11 09:47:37 as read along with 4 people jyuh balajis siebertm pablomendes
  • InterProScan--an integration platform for the signature-recognition methods in InterPro.
    Bioinformatics, Vol. 17, No. 9. (September 2001), pp. 847-848.
    by EM Zdobnov, R Apweiler
    posted to annotation b2gpaper2 bioinformatics gene_ontology_tool by sgoetz on 2007-10-11 09:46:06 as read along with 3 people and 1 group indigoviolet dullhunk leechuck EisenLab
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