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di sebk library [43 articles]

Articoli aggiunti di recente nella biblioteca di sebk .
  • Evaluation of methods for the prediction of membrane spanning regions.
    Bioinformatics, Vol. 17, No. 7. (July 2001), pp. 646-653.
    by S Möller, MD Croning, R Apweiler
    posted to sequence review protein membrane-insertion membrane by sebk on 2008-10-06 16:10:57 as ** along with 3 people happy_manatee cjeans xingxu
  • Reliability of transmembrane predictions in whole-genome data
    FEBS Letters, Vol. 532, No. 3. (18 December 2002), pp. 415-418.
    by Lukas Kall, Erik L Sonnhammer
    posted to sequence review protein membrane-insertion membrane by sebk on 2008-10-06 16:09:54 as **
  • A hidden Markov model for predicting transmembrane helices in protein sequences.
    Proc Int Conf Intell Syst Mol Biol, Vol. 6 (1998), pp. 175-182.
    by EL Sonnhammer, G von Heijne, A Krogh
    posted to sequence protein membrane-insertion membrane by sebk on 2008-10-06 16:08:49 as *** along with 2 people netterpaladin xingxu
  • MUSCLE: a multiple sequence alignment method with reduced time and space complexity.
    BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004)
    by RC Edgar
    posted to sequence protein alignment by sebk on 2008-09-22 18:09:16 as *** along with 14 people and 3 groups wallacei knaseanka chrn jwm balajis gbart caporaso sriram_s cdallett sanchezbuelna timflutre gisle urgi Ema Radiation_Damage Stressosome biomedical-nlp
  • MUSCLE: multiple sequence alignment with high accuracy and high throughput.
    Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1792-1797.
    by RC Edgar
    posted to sequence protein alignment by sebk on 2008-09-22 14:58:53 as *** along with 18 people and 2 groups agustinarce fhsantanna nachtalp bpb chrn jwm Haggan sanchezbuelna timflutre olympos martainn edvin newton1234 skumagai bmaust sconlan dmp kcrawlik Radiation_Damage Stressosome
  • Vertebrate Membrane Proteins: Structure, Function, and Insights from Biophysical Approaches
    Pharmacol Rev, Vol. 60, No. 1. (1 March 2008), pp. 43-78.
    by Daniel J Muller, Nan Wu, Krzysztof Palczewski
    posted to membrane protein structure by sebk on 2008-08-07 15:35:01 as ***
  • Coarse-Grained MD Simulations of Membrane Protein-Bilayer Self-Assembly
    Structure, Vol. 16, No. 4. (8 April 2008), pp. 621-630.
    by Kathryn A Scott, Peter J Bond, Anthony Ivetac, Alan P Chetwynd, Syma Khalid, Mark S Sansom
    posted to database membrane membrane-insertion modelling protein structure by sebk on 2008-08-07 15:06:19 as read along with 2 people and 1 group choonpeng sobolevnrm baker-group
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
    posted to networks protein representation by sebk on 2008-07-29 18:02:11 as *** along with 20 people and 2 groups jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema lptolik kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani chad_davis stajich rsantana Berkeley Mycology OPIG
  • MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison
    Protein Sci, Vol. 11, No. 11. (1 November 2002), pp. 2606-2621.
    by Angel R Ortiz, Charlie E Strauss, Osvaldo Olmea
    posted to alignment protein sequence by sebk on 2008-07-16 18:25:54 as ** along with 6 people and 2 groups ana iakes dimka jwm analogAI tjimenez structural_bioinformatics Bioinformatics
  • GWFASTA: server for FASTA search in eukaryotic and microbial genomes.
    BioTechniques, Vol. 33, No. 3. (September 2002)
    by B Issac, GP Raghava
    posted to alignment sequence by sebk on 2008-07-16 18:20:13 as read
  • The Protein Data Bank.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 235-242.
    by HM Berman, J Westbrook, Z Feng, G Gilliland, TN Bhat, H Weissig, IN Shindyalov, PE Bourne
    posted to database protein structure by sebk on 2008-07-16 18:19:42 as read along with 23 people and 4 groups nigham lillekatt thaliana dimka kuhn jwm vavi bicko itmeson dgront caporaso condon leelarcombe aengisch debatebob massivemayhem gisle girschick selrac tji higueruelo boris_aguilar timg Radiation_Damage Stressosome biomedical-nlp beta
  • Transmembrane helix prediction: a comparative evaluation and analysis
    Protein Engineering, Design and Selection, Vol. 18, No. 6. (June 2005), pp. 295-308.
    by Jonathan M Cuthbertson, Declan A Doyle, Mark S Sansom
    posted to membrane membrane-insertion sequence by sebk on 2008-07-16 17:03:27 as **
  • A simple statistical method for discriminating outer membrane proteins with better accuracy
    Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 961-968.
    by Gromiha M Michael, Suwa Makiko
    posted to membrane membrane-insertion sequence by sebk on 2008-07-16 16:33:16 as **
  • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
    J Mol Biol, Vol. 305, No. 3. (19 January 2001), pp. 567-580.
    by A Krogh, B Larsson, G von Heijne, EL Sonnhammer
    posted to membrane membrane-insertion sequence by sebk on 2008-07-16 15:48:08 as ** along with 7 people thaliana bjorns andreasauerwein j3xucite happy_manatee massivemayhem twenta
  • TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.
    Bioinformatics (Oxford, England) (11 November 2004)
    by Gábor E E Tusnády, Zsuzsanna Dosztányi, István Simon
    posted to membrane membrane-insertion protein structure by sebk on 2008-05-12 13:52:18 as **
  • PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by GE Tusnády, Z Dosztányi, I Simon
    posted to database membrane membrane-insertion protein structure by sebk on 2008-05-12 13:49:43 as read along with 2 people chrn kallberg
  • Selective Constraints, Amino Acid Composition, and the Rate of Protein Evolution
    Mol Biol Evol, Vol. 17, No. 4. (1 April 2000), pp. 656-664.
    by Nicolas J Tourasse, Wen-Hsiung Li
    posted to membrane protein sequence substitution by sebk on 2008-03-13 17:51:48 as ***** along with 3 people and 1 group penka RamuAnandakrishnan cdeane Nie
  • Eigenvalue analysis of amino acid substitution matrices reveals a sharp transition of the mode of sequence conservation in proteins.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2504-2508.
    by AR Kinjo, K Nishikawa
    posted to protein sequence substitution by sebk on 2008-03-13 17:45:35 as read along with 1 group OPIG
  • How protein transmembrane segments sense the lipid environment.
    Biochemistry, Vol. 46, No. 6. (13 February 2007), pp. 1457-1465.
    by TK Nyholm, S Ozdirekcan, JA Killian
    posted to environment-specific membrane membrane-insertion modelling protein structure by sebk on 2008-02-08 18:14:20 as **** along with 3 people and 1 group andreasauerwein xdeupi netterpaladin LabCompMed
  • Positioning of proteins in membranes: a computational approach.
    Protein Sci, Vol. 15, No. 6. (June 2006), pp. 1318-1333.
    by AL Lomize, ID Pogozheva, MA Lomize, HI Mosberg
    posted to membrane membrane-insertion modelling protein structure by sebk on 2008-02-07 17:16:18 as ***** along with 2 people thaliana rsandie
  • Transmembrane proteins in the Protein Data Bank: identification and classification.
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2964-2972.
    by GE Tusnády, Z Dosztányi, I Simon
    posted to database membrane membrane-insertion modelling protein structure by sebk on 2008-02-07 16:26:59 as read along with 3 people and 1 group chrn xdeupi viktor21614 LabCompMed
  • OPM: orientations of proteins in membranes database.
    Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 623-625.
    by MA Lomize, AL Lomize, ID Pogozheva, HI Mosberg
    posted to database membrane membrane-insertion modelling protein structure by sebk on 2008-02-07 15:50:19 as read
  • PROVAT: a tool for Voronoi tessellation analysis of protein structures and complexes
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3316-3317.
    by Swanand P Gore, David F Burke, Tom L Blundell
    posted to interface modelling protein structure by sebk on 2008-01-30 16:48:19 as read along with 3 people and 2 groups jwm cat_worth siebertm Radiation_Damage Stressosome
  • Voro3D: 3D Voronoi tessellations applied to protein structures
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1715-1716.
    by Franck Dupuis, Jean-Francois Sadoc, Remi Jullien, Borislav Angelov, Jean-Paul Mornon
    posted to interface modelling protein structure by sebk on 2008-01-29 21:13:30 as read
  • Prediction of membrane protein orientation in lipid bilayers: a theoretical approach.
    J Mol Graph Model, Vol. 20, No. 3. (2001), pp. 235-244.
    by F Basyn, B Charloteaux, A Thomas, R Brasseur
    posted to membrane membrane-insertion modelling protein structure by sebk on 2007-12-13 20:48:22 as ***
  • IMPALA: A simple restraint field to simulate the biological membrane in molecular structure studies
    Proteins: Structure, Function, and Genetics, Vol. 30, No. 4. (1998), pp. 357-371.
    by Ph, M Rahman, R Brasseur
    posted to membrane modelling protein structure by sebk on 2007-12-13 20:46:53 as ***
  • The role and predicted propensity of conserved proline residues in the 5-HT3 receptor.
    J Biol Chem, Vol. 276, No. 41. (12 October 2001), pp. 37962-37966.
    by CM Deane, SC Lummis
    posted to function mutagenesis protein structure by sebk on 2007-12-13 13:13:01 as read along with 1 person cdeane
  • The protein folding problem: when will it be solved?
    Curr Opin Struct Biol (13 June 2007)
    by Ken A A Dill, S Banu B Ozkan, Thomas R R Weikl, John D D Chodera, Vincent A A Voelz
    posted to folding protein by sebk on 2007-12-09 22:51:36 as ** along with 6 people wouterboomsma cat_worth cactus Jporci cdeane kalicuta
  • An efficient conformational sampling method for homology modeling.
    Proteins (11 October 2007)
    by Rongsheng Han, Alejandra Leo-Macias, Daniel Zerbino, Ugo Bastolla, Bruno Contreras-Moreira, Angel R R Ortiz
    posted to montecarlo protein refinement structure by sebk on 2007-12-09 22:49:22 as ** along with 4 people dimka choonpeng insectopalo cdeane
  • Scoring function accuracy for membrane protein structure prediction.
    Proteins, Vol. 68, No. 1. (1 July 2007), pp. 67-75.
    by C Gao, HA Stern
    posted to membrane modelling protein structure by sebk on 2007-12-09 22:43:36 as ** along with 1 person cdeane
  • Fragment Ranking in Modelling of Protein Structure : Conformationally Constrained Environmental Amino Acid Substitution Tables
    Journal of Molecular Biology, Vol. 229, No. 1. (5 January 1993), pp. 194-220.
    by Christopher M Topham, Alasdair Mcleod, Frank Eisenmenger, John P Overington, Mark S Johnson, Tom L Blundell
    posted to environment-specific modelling protein structure substitution by sebk on 2007-12-08 20:53:39 as ** along with 3 people vavi dgront medic0747
  • Comparative protein modelling by satisfaction of spatial restraints
    J Mol Biol, Vol. 234, No. 3. (5 December 1993), pp. 779-815.
    by A Sali, TL Blundell
    posted to modelling protein structure by sebk on 2007-12-08 20:51:07 as ** along with 11 people dimka vavi bicko chad_davis ttjoseph skhadar dgront rabio massivemayhem medic0747 granujilla
  • Insertion of X-ray structures of proteins in membranes
    Journal of Molecular Graphics and Modelling, Vol. 22, No. 1. (September 2003), pp. 11-21.
    by Frederic Basyn, Benoit Spies, Olivier Bouffioux, Annick Thomas, Robert Brasseur
    posted to membrane membrane-insertion protein structure by sebk on 2007-12-08 19:54:10 as read
  • Solving the membrane protein folding problem
    Nature, Vol. 438, No. 7068. (30 November 2005), pp. 581-589.
    by James U Bowie
    posted to folding membrane protein structure by sebk on 2007-12-06 11:01:38 as *** along with 4 people and 1 group thaliana xdeupi Odi viktor21614 LabCompMed
  • Sequence-structure homology recognition by iterative alignment refinement and comparative modeling.
    Proteins, Vol. Suppl 5 (2001), pp. 92-97.
    by MG Williams, H Shirai, J Shi, HG Nagendra, J Mueller, K Mizuguchi, RN Miguel, SC Lovell, CA Innis, CM Deane, L Chen, N Campillo, DF Burke, TL Blundell, PI de Bakker
    posted to alignment protein sequence structure by sebk on 2007-12-02 11:17:37 as ** along with 2 people medic0747 cdeane
  • An iterative structure-assisted approach to sequence alignment and comparative modeling.
    Proteins, Vol. Suppl 3 (1999), pp. 55-60.
    by DF Burke, CM Deane, HA Nagarajaram, N Campillo, M Martin-Martinez, J Mendes, F Molina, J Perry, BV Reddy, CM Soares, RE Steward, M Williams, MA Carrondo, TL Blundell, K Mizuguchi
    posted to alignment protein sequence structure by sebk on 2007-12-02 11:16:40 as ** along with 2 people medic0747 cdeane
  • Protein three-dimensional structural databases: domains, structurally aligned homologues and superfamilies.
    Acta Crystallogr D Biol Crystallogr, Vol. 54, No. Pt 6 Pt 1. (1 November 1998), pp. 1168-1177.
    by R Sowdhamini, DF Burke, C Deane, JF Huang, K Mizuguchi, HA Nagarajaram, JP Overington, N Srinivasan, RE Steward, TL Blundell
    posted to alignment database protein structure by sebk on 2007-12-02 11:15:11 as ** along with 1 person cdeane
  • JOY: protein sequence-structure representation and analysis.
    Bioinformatics, Vol. 14, No. 7. (1998), pp. 617-623.
    by K Mizuguchi, CM Deane, TL Blundell, MS Johnson, JP Overington
    posted to alignment environment-specific protein sequence structure by sebk on 2007-12-02 11:13:53 as *** along with 7 people bicko chrn laurabailey massivemayhem medic0747 cdeane TOchi
  • HOMSTRAD: a database of protein structure alignments for homologous families.
    Protein Sci, Vol. 7, No. 11. (November 1998), pp. 2469-2471.
    by K Mizuguchi, CM Deane, TL Blundell, JP Overington
    posted to alignment database protein structure by sebk on 2007-12-02 11:11:14 as read along with 6 people bicko chrn massivemayhem medic0747 cdeane newton1234
  • Environment specific substitution tables for thermophilic proteins.
    BMC Bioinformatics, Vol. 8 Suppl 1 (2007)
    by K Mizuguchi, M Sele, MV Cubellis
    posted to environment-specific protein sequence structure substitution by sebk on 2007-12-02 11:04:38 as read
  • How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles.
    Protein Sci, Vol. 12, No. 4. (April 2003), pp. 647-665.
    by WF DeGrado, H Gratkowski, JD Lear
    posted to helix-packing membrane protein structure by sebk on 2007-12-02 11:01:08 as read along with 1 person thaliana
  • Helix-packing motifs in membrane proteins.
    Proc Natl Acad Sci U S A (5 September 2006)
    by R F S F Walters, W F F Degrado
    posted to helix-packing membrane protein structure by sebk on 2007-12-02 10:59:43 as read along with 5 people and 1 group hc5428 thaliana xdeupi dgront chgjb LabCompMed
  • FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties.
    J Mol Biol, Vol. 310, No. 1. (29 June 2001), pp. 243-257.
    by J Shi, TL Blundell, K Mizuguchi
    posted to alignment environment-specific protein structure substitution by sebk on 2007-11-26 08:25:22 as read along with 7 people and 1 group j3xucite miguel bicko analogAI massivemayhem medic0747 TOchi OPIG
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