Topology and robustness in the Drosophila segment polarity network.

@article{citeulike:147, abstract = {A complex hierarchy of genetic interactions converts a single-celled Drosophila melanogaster egg into a multicellular embryo with 14 segments. Previously, von Dassow et al. reported that a mathematical model of the genetic interactions that defined the polarity of segments (the segment polarity network) was robust (von Dassow et al. 2000). As quantitative information about the system was unavailable, parameters were sampled randomly. A surprisingly large fraction of these parameter sets allowed the model to maintain and elaborate on the segment polarity pattern. This robustness is due to the positive feedback of gene products on their own expression, which induces individual cells in a model segment to adopt different stable expression states (bistability) corresponding to different cell types in the segment polarity pattern. A positive feedback loop will only yield multiple stable states when the parameters that describe it satisfy a particular inequality. By testing which random parameter sets satisfy these inequalities, I show that bistability is necessary to form the segment polarity pattern and serves as a strong predictor of which parameter sets will succeed in forming the pattern. Although the original model was robust to parameter variation, it could not reproduce the observed effects of cell division on the pattern of gene expression. I present a modified version that incorporates recent experimental evidence and does successfully mimic the consequences of cell division. The behavior of this modified model can also be understood in terms of bistability in positive feedback of gene expression. I discuss how this topological property of networks provides robust pattern formation and how large changes in parameters can change the specific pattern produced by a network.}, address = {Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts, USA. ningolia@fas.harvard.edu}, author = {Ingolia, N. T. }, citeulike-article-id = {147}, comment = {Beautiful paper, just saw Ingolia present it last week.}, doi = {http://dx.doi.org/10.1371/journal.pbio.0020123}, issn = {1544-9173}, journal = {PLoS Biol}, keywords = {computational, development, drosophila, modelling, multistability, oa, robustness, segmentpolarity}, month = {June}, number = {6}, pages = {805--815}, posted-at = {2004-11-10 05:44:20}, priority = {0}, title = {Topology and robustness in the Drosophila segment polarity network.}, url = {http://dx.doi.org/10.1371/journal.pbio.0020123}, volume = {2}, year = {2004} }

TY - JOUR ID - citeulike:147 L3 - citeulike-article-id:147 N2 - A complex hierarchy of genetic interactions converts a single-celled Drosophila melanogaster egg into a multicellular embryo with 14 segments. Previously, von Dassow et al. reported that a mathematical model of the genetic interactions that defined the polarity of segments (the segment polarity network) was robust (von Dassow et al. 2000). As quantitative information about the system was unavailable, parameters were sampled randomly. A surprisingly large fraction of these parameter sets allowed the model to maintain and elaborate on the segment polarity pattern. This robustness is due to the positive feedback of gene products on their own expression, which induces individual cells in a model segment to adopt different stable expression states (bistability) corresponding to different cell types in the segment polarity pattern. A positive feedback loop will only yield multiple stable states when the parameters that describe it satisfy a particular inequality. By testing which random parameter sets satisfy these inequalities, I show that bistability is necessary to form the segment polarity pattern and serves as a strong predictor of which parameter sets will succeed in forming the pattern. Although the original model was robust to parameter variation, it could not reproduce the observed effects of cell division on the pattern of gene expression. I present a modified version that incorporates recent experimental evidence and does successfully mimic the consequences of cell division. The behavior of this modified model can also be understood in terms of bistability in positive feedback of gene expression. I discuss how this topological property of networks provides robust pattern formation and how large changes in parameters can change the specific pattern produced by a network. IS - 6 JF - PLoS Biol SN - 1544-9173 AD - Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts, USA. ningolia@fas.harvard.edu EP - 815 TI - Topology and robustness in the Drosophila segment polarity network. VL - 2 SP - 805 KW - computational KW - development KW - drosophila KW - modelling KW - multistability KW - oa KW - robustness KW - segmentpolarity N1 - Beautiful paper, just saw Ingolia present it last week. AU - Ingolia, NT PY - 2004/06// UR - http://dx.doi.org/10.1371/journal.pbio.0020123 ER -