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di rdiaz library [344 articles]

Articoli aggiunti di recente nella biblioteca di rdiaz .
  • Analyses and Comparison of Accuracy of Different Genotype Imputation Methods
    PLoS ONE, Vol. 3, No. 10. (29 October 2008), e3551.
    by Yu-Fang Pei, Jian Li, Lei Zhang, Christopher J Papasian, Hong-Wen Deng
    posted to no-tag by rdiaz on 2008-11-21 17:04:12 as **
  • Coincidence between Transcriptome Analyses on Different Microarray Platforms Using a Parametric Framework
    PLoS ONE, Vol. 3, No. 10. (29 October 2008), e3555.
    by Tomokazu Konishi, Fumikazu Konishi, Shigeru Takasaki, Kohei Inoue, Koji Nakayama, Akihiko Konagaya
    posted to no-tag by rdiaz on 2008-11-21 17:00:04 as **
  • Identifying molecular markers associated with classification of genotypes by External Logistic Biplots
    Bioinformatics (29 October 2008), btn552.
    by JR Demey, JL Vicente-Villardon, MP Galindo-Villardon, AY Zambrano
    posted to regression logistic classification cgh binary by rdiaz on 2008-11-21 13:35:23 as **
  • Conditional Random Pattern Algorithm for LOH Inference and Segmentation
    Bioinformatics (29 October 2008), btn561.
    by Ling-Yun Wu, Xiaobo Zhou, Fuhai Li, Xiaorong Yang, Chung-Che Chang, Stephen T Wong
    posted to no-tag by rdiaz on 2008-11-21 13:32:57 as **
  • Boolean implication networks derived from large scale, whole genome microarray datasets
    Genome Biology, Vol. 9 (30 October 2008), R157.
    by Debashis Sahoo, David L Dill, Andrew J Gentles, Robert Tibshirani, Sylvia K Plevritis
    posted to networks expression cgh causality by rdiaz on 2008-11-21 13:25:50 as ** along with 5 people imina pengchy jyuh mdperry bcondon
  • CANCER: Aneuploidy Advantages?
    Science, Vol. 322, No. 5902. (31 October 2008), pp. 692-693.
    by Eva Hernando
    posted to no-tag by rdiaz on 2008-11-21 13:23:05 as **
  • Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web
    PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000204.
    by Duncan Hull, Steve R Pettifer, Douglas B Kell
    posted to no-tag by rdiaz on 2008-11-21 12:56:18 as ** along with 59 people and 7 groups narroyo treangen hpaces bumatic BerndBerndsen esterhasz phreeza dbk rempeljl teachingaging cs02 joseph_x_zhou continea Rosetta fletchad Betelgeuse60 tomroper 1971biblio timrwatkins rschulz cisevol ryan smithrise silberbauer natstreet pick600 xjlibod ukppdadsr robertlischke bookwormzz NIlz junwang4 taguchi tag barry kristgy caseybrown Gaetan bcondon lynnefox marekrud nuin sdgsilvana ckai1 jyuh neils carlfulp norris jago druvus alhoori emayorga GeeSharpMinor fgibson chad_davis OriginalLurch Zephyrus leonardo dullhunk Département Hypermédia - Master NET JacksonLab BergmanLab McCammon kpa-resources structural_bioinformatics Roswell Cancer Crosstalk
  • Support Vector Machines and Kernels for Computational Biology
    PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000173.
    by Asa Ben-Hur, Cheng S Ong, Sören Sonnenburg, Bernhard Schölkopf, Gunnar Rätsch
    posted to svm review classification by rdiaz on 2008-11-21 12:54:35 as ** along with 14 people and 1 group nuin dakelley rschulz Borelli taguchi kristina bayesian chad_davis mdstobbe tny giovenko markchen druvus GeeSharpMinor VisionLab
  • Prediction of human miRNAs using tissue-selective motifs in 3′ UTRs
    Proceedings of the National Academy of Sciences (24 October 2008)
    by Yao-Ming Chang, Hsueh-Fen Juan, Tzu-Ying Lee, Ya-Ya Chang, Yao-Ming Yeh, Wen-Hsiung Li, Arthur C Shih
    posted to no-tag by rdiaz on 2008-11-21 12:47:52 as ** along with 5 people and 2 groups inesdesantiago heliopais maximilianh bpcusack daforerog microRNA BenosLab
  • Gene Set Enrichment Analysis using Linear Models and Diagnostics
    Bioinformatics (11 September 2008), btn465.
    by Assaf P Oron, Zhen Jiang, Robert Gentleman
    posted to ontology gene fatigo by rdiaz on 2008-11-21 12:36:24 as ** along with 7 people jyuh sg45653 natstreet druvus aviad_work giovenko aconesa
  • A Novel Gene Signature for Molecular Diagnosis of Human Prostate Cancer by RT-qPCR
    PLoS ONE, Vol. 3, No. 10. (31 October 2008), e3617.
    by Federica Rizzi, Lucia Belloni, Pellegrino Crafa, Mirca Lazzaretti, Daniel Remondini, Stefania Ferretti, Piero Cortellini, Arnaldo Corti, Saverio Bettuzzi
    posted to no-tag by rdiaz on 2008-11-21 12:32:37 as **
  • Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models.
    Bioinformatics (Oxford, England) (30 October 2008)
    by Simon Rogers, Mark Girolami, Walter Kolch, Katrina M M Waters, Tao Liu, Brian Thrall, H Steven S Wiley
    posted to integrative integration expression cnv cgh by rdiaz on 2008-11-21 12:18:24 as ** along with 1 person jyuh
  • Shortest Path analysis using Partial Correlations for classifying gene functions from gene expression data.
    Bioinformatics (Oxford, England) (3 November 2008)
    by A M M Fitch, M B B Jones
    posted to probabilistic network model graphical ggm gaussian bayesian by rdiaz on 2008-11-21 12:13:07 as ** along with 2 people jyuh Doug
  • Cytokine-Induced Signaling Networks Prioritize Dynamic Range over Signal Strength
    Cell, Vol. 135, No. 2. (17 October 2008), pp. 343-354.
    by K Janes, H Reinhardt, M Yaffe
    posted to no-tag by rdiaz on 2008-11-21 11:58:25 as ** along with 4 people marck sg45653 jjray renatomilani
  • Genome-Wide Analysis of Human Disease Alleles Reveals That Their Locations Are Correlated in Paralogous Proteins
    PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000218.
    by Mark Yandell, Barry Moore, Fidel Salas, Chris Mungall, Andrew Macbride, Charles White, Martin G Reese
    posted to no-tag by rdiaz on 2008-11-21 11:51:22 as ** along with 4 people bpcusack cabbagesofdoom grahamc djkt
  • High-Resolution Copy-Number Variation Map Reflects Human Olfactory Receptor Diversity and Evolution
    PLoS Genet, Vol. 4, No. 11. (7 November 2008), e1000249.
    by Yehudit Hasin, Tsviya Olender, Miriam Khen, Claudia Gonzaga-Jauregui, Philip M Kim, Alexander E Urban, Michael Snyder, Mark B Gerstein, Doron Lancet, Jan O Korbel
    posted to no-tag by rdiaz on 2008-11-21 11:45:36 as ** along with 3 people cabbagesofdoom pkonings caseybrown
  • Unlocking the power of cross-species genomic analyses: identification of evolutionarily conserved breast cancer networks and validation of preclinical models
    Breast Cancer Research, Vol. 10 (11 September 2008), 213.
    by Christina N Bennett, Jeffrey E Green
    posted to no-tag by rdiaz on 2008-11-21 10:47:18 as **
  • Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer
    BMC Genomics, Vol. 8 (20 February 2007), 53.
    by Judith N Kloth, Jan Oosting, Tom van Wezel, Karoly Szuhai, Jeroen Knijnenburg, Arko Gorter, Gemma G Kenter, Gert J Fleuren, Ekaterina S Jordanova
    posted to no-tag by rdiaz on 2008-11-21 10:45:54 as ** along with 1 person jfr
  • High-resolution genomic and expression analyses of copy number alterations in breast tumors
    Genes, Chromosomes and Cancer, Vol. 47, No. 6. (2008), pp. 530-542.
    by Peter M Haverty, Jane Fridlyand, Li Li, Gad Getz, Rameen Beroukhim, Scott Lohr, Thomas D Wu, Guy Cavet, Zemin Zhang, John Chant
    posted to no-tag by rdiaz on 2008-11-21 10:45:40 as ** along with 1 person chrisamiller
  • Genome-wide analysis of DNA copy number alterations and gene expression in gastric cancer.
    The Journal of pathology, Vol. 216, No. 4. (December 2008), pp. 471-482.
    by Y Tsukamoto, T Uchida, S Karnan, T Noguchi, LT Nguyen, M Tanigawa, I Takeuchi, K Matsuura, N Hijiya, C Nakada, T Kishida, K Kawahara, H Ito, K Murakami, T Fujioka, M Seto, M Moriyama
    posted to no-tag by rdiaz on 2008-11-21 10:35:15 as **
  • MicroRNA expression profiling of human breast cancer identifies new markers of tumour subtype
    Genome Biology, Vol. 8 (08 October 2007), R214.
    by Cherie Blenkiron, Leonard D Goldstein, Natalie P Thorne, Inmaculada Spiteri, Suet-Feung Chin, Mark J Dunning, Nuno L Barbosa-Morais, Andrew E Teschendorff, Andrew R Green, Ian O Ellis, Simon Tavare, Carlos Caldas, Eric A Miska
    posted to no-tag by rdiaz on 2008-11-21 10:19:07 as ** along with 5 people and 2 groups Stew jfr heliopais ealloza giovenko Bioinformatics - CRUK microRNA
  • Integrated gene copy number and expression microarray analysis of gastric cancer highlights potential target genes.
    International journal of cancer. Journal international du cancer (27 May 2008)
    by Samuel Myllykangas, Siina Junnila, Arto Kokkola, Reija Autio, Ilari Scheinin, Tuula Kiviluoto, Marja-Liisa L Karjalainen-Lindsberg, Jaakko Hollmén, Sakari Knuutila, Pauli Puolakkainen, Outi Monni
    posted to no-tag by rdiaz on 2008-11-21 10:17:00 as ** along with 1 person Terkko
  • Integrative genome-wide analysis reveals a robust genomic glioblastoma signature associated with copy number driving changes in gene expression
    Genes, Chromosomes and Cancer, Vol. 48, No. 1. (2009), pp. 55-68.
    by Marie de Tayrac, Amandine Etcheverry, Marc Aubry, Stephan Saïkali, Abderrahmane Hamlat, Veronique Quillien, André Le Treut, Marie-Dominique Galibert, Jean Mosser
    posted to no-tag by rdiaz on 2008-11-21 10:16:18 as ** along with 1 person srp33
  • Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Peter Dimaggio, Scott Mcallister, Christodoulos Floudas, Xiao J Feng, Joshua Rabinowitz, Herschel Rabitz
    posted to no-tag by rdiaz on 2008-11-20 18:15:36 as ** along with 4 people lptolik druvus nuin barriot
  • Extensive genomic copy number variation in embryonic stem cells
    Proceedings of the National Academy of Sciences, Vol. 105, No. 45. (11 November 2008), pp. 17453-17456.
    by Qi Liang, Nathalie Conte, William C Skarnes, Allan Bradley
    posted to no-tag by rdiaz on 2008-11-20 18:03:26 as ** along with 1 person pkonings
  • A competitive hybridization model predicts probe signal intensity on high density DNA microarrays
    Nucl. Acids Res., Vol. 36, No. 20. (1 November 2008), pp. 6585-6591.
    by Shuzhao Li, Alex Pozhitkov, Marius Brouwer
    posted to no-tag by rdiaz on 2008-11-20 17:53:54 as ** along with 1 person ojabado
  • Randomization in Laboratory Procedure Is Key to Obtaining Reproducible Microarray Results
    PLoS ONE, Vol. 3, No. 11. (14 November 2008), e3724.
    by Hyuna Yang, Christina A Harrington, Kristina Vartanian, Christopher D Coldren, Rob Hall, Gary A Churchill
    posted to no-tag by rdiaz on 2008-11-20 17:37:34 as ** along with 2 people and 1 group GeeSharpMinor sameetmehta Bioinformatics
  • ArrayPlex: distributed, interactive and programmatic access to genome sequence, annotation, ontology, and analytical toolsets
    Genome Biology, Vol. 9, No. 11. (2008)
    by Patrick Killion, Vishwanath Iyer
    posted to no-tag by rdiaz on 2008-11-20 17:28:32 as ** along with 6 people pengchy lptolik barriot natstreet shikin druvus
  • Expression profiles of switch-like genes accurately classify tissue and infectious disease phenotypes in model-based classification
    BMC Bioinformatics, Vol. 9 (17 November 2008), 486.
    by Michael Gormley, Aydin Tozeren
    posted to no-tag by rdiaz on 2008-11-20 17:19:49 as **
  • Identifying differential correlation in gene/pathway combinations
    BMC Bioinformatics, Vol. 9 (18 November 2008), 488.
    by Rosemary, Giovanni Parmigiani
    posted to no-tag by rdiaz on 2008-11-20 17:18:44 as ** along with 5 people imina renatomilani lptolik barriot ptrobajo
  • Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
    Proceedings of the National Academy of Sciences (6 December 2007), 0710052104.
    by Rameen Beroukhim, Gad Getz, Leia Nghiemphu, Jordi Barretina, Teli Hsueh, David Linhart, Igor Vivanco, Jeffrey C Lee, Julie H Huang, Sethu Alexander, Jinyan Du, Tweeny Kau, Roman K Thomas, Kinjal Shah, Horacio Soto, Sven Perner, John Prensner, Ralph M Debiasi, Francesca Demichelis, Charlie Hatton, Mark A Rubin, Levi A Garraway, Stan F Nelson, Linda Liau, Mischel, Tim F Cloughesy, Matthew Meyerson, Todd A Golub, Eric S Lander, Ingo K Mellinghoff, William R Sellers
    posted to no-tag by rdiaz on 2008-10-21 17:02:37 as ** along with 6 people and 2 groups srp33 jfr oelemento cerami loopback007 chrisamiller Cancer_Stem_Cells Glioma Reviews
  • Towards a lightweight generic computational grid framework for biological research
    BMC Bioinformatics, Vol. 9 (02 October 2008), 407.
    by Mark D Halling-Brown, David S Moss, Adrian J Shepherd
    posted to no-tag by rdiaz on 2008-10-15 09:40:24 as ** along with 1 person reyez
  • wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data.
    Nucleic acids research, Vol. 36, No. 7. (April 2008)
    by P Cahan, LE Godfrey, PS Eis, TA Richmond, RR Selzer, M Brent, HL McLeod, TJ Ley, TA Graubert
    posted to no-tag by rdiaz on 2008-10-14 11:49:52 as ** along with 1 person jfr
  • A probe-density-based analysis method for array CGH data: simulation, normalization and centralization
    Bioinformatics, Vol. 24, No. 19. (1 October 2008), 2276.
    by Hung-I H Chen, Fang-Han Hsu, Yuan Jiang, Mong-Hsun Tsai, Pan-Chyr Yang, Paul S Meltzer, Eric Y Chuang, Yidong Chen
    posted to no-tag by rdiaz on 2008-10-14 11:48:38 as **
  • High resolution array-CGH analysis of single cells
    Nucleic Acids Research, Vol. 35, No. 3. (February 2007), pp. e15-e15.
    by Fiegler, Heike, Geigl, B Jochen, Langer, Sabine, Rigler, Diane, Porter, Keith, Unger, Kristian, Carter, P Nigel, Speicher, R Michael
    posted to no-tag by rdiaz on 2008-10-14 11:47:26 as **
  • A pseudolikelihood approach for simultaneous analysis of array comparative genomic hybridizations
    Biostatistics, Vol. 7, No. 3. (July 2006), pp. 399-421.
    by Engler, A David, Mohapatra, Gayatry, Louis, N David, Betensky, A Rebecca
    posted to no-tag by rdiaz on 2008-10-14 11:15:43 as **
  • Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data.
    Nucleic acids research, Vol. 36, No. 2. (February 2008)
    by C Klijn, H Holstege, J de Ridder, X Liu, M Reinders, J Jonkers, L Wessels
    posted to no-tag by rdiaz on 2008-10-14 11:15:40 as ** along with 2 people Zephyrus jfr
  • GEAR: genomic enrichment analysis of regional DNA copy number changes
    Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 420-421.
    by Tae-Min Kim, Yu-Chae Jung, Mun-Gan Rhyu, Myeong H Jung, Yeun-Jun Chung
    posted to no-tag by rdiaz on 2008-10-14 11:15:03 as **
  • MiMiR: an integrated platform for microarray data sharing, mining and analysis
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Chris Tomlinson, Manjula Thimma, Stelios Alexandrakis, Tito Castillo, Jayne Dennis, Anthony Brooks, Thomas Bradley, Carly Turnbull, Ekaterini Blaveri, Geraint Barton, Norie Chiba, Klio Maratou, Pat Soutter, Tim Aitman, Laurence Game
    posted to no-tag by rdiaz on 2008-10-14 10:05:50 as ** along with 2 people jyuh GeeSharpMinor
  • caBIG VISDA: modeling, visualization, and discovery for cluster analysis of genomic data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yitan Zhu, Huai Li, David Miller, Zuyi Wang, Jianhua Xuan, Robert Clarke, Eric Hoffman, Yue Wang
    posted to no-tag by rdiaz on 2008-10-14 10:02:04 as ** along with 2 people operon nuin
  • Combining classifiers for improved classification of proteins from sequence or structure
    BMC Bioinformatics, Vol. 9 (22 September 2008), 389.
    by Iain Melvin, Jason Weston, Christina S Leslie, William S Noble
    posted to no-tag by rdiaz on 2008-10-14 10:00:48 as **
  • A comparative study of survival models for breast cancer prognostication based on microarray data: does a single gene beat them all?
    Bioinformatics (Oxford, England) (17 July 2008)
    by B Haibe-Kains, C Desmedt, C Sotiriou, G Bontempi
    posted to signs by rdiaz on 2008-10-13 18:27:18 as ** along with 6 people and 1 group jfr sg45653 giovenko Zephyrus shigepong jyuh Breast Cancer Reading Club
  • A fast Bayesian change point analysis for the segmentation of microarray data
    Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2143-2148.
    by Chandra Erdman, John W Emerson
    posted to no-tag by rdiaz on 2008-10-13 18:25:57 as ** along with 2 people jyuh talponer
  • A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data
    Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4280-4288.
    by Yang Xie, Wei Pan, Arkady B Khodursky
    posted to no-tag by rdiaz on 2008-10-13 18:18:40 as ** along with 6 people and 8 groups paszkows klaudius shantanu dquest shigepong shikin structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • CNVDetector: locating copy number variations using array CGH data.
    Bioinformatics (Oxford, England) (7 October 2008)
    by Peng-An A Chen, Hsiao-Fei F Liu, Kun-Mao M Chao
    posted to no-tag by rdiaz on 2008-10-13 18:00:49 as ** along with 1 person nuin
  • Prepare for the deluge
    Nat Biotech, Vol. 26, No. 10. (October 2008), pp. 1099-1099.
    posted to no-tag by rdiaz on 2008-10-13 17:58:45 as ** along with 2 people alexknight GeeSharpMinor
  • Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization
    Genome Biology, Vol. 8 (25 October 2007), R228.
    by John C Marioni, Natalie P Thorne, Armand Valsesia, Tomas Fitzgerald, Richard Redon, Heike Fiegler, Daniel T Andrews, Barbara E Stranger, Andrew G Lynch, Emmanouil T Dermitzakis, Nigel P Carter, Simon Tavare, Matthew E Hurles
    posted to no-tag by rdiaz on 2008-10-13 14:10:25 as ** along with 3 people jfr jlangdon sanchezbuelna
  • A fast and flexible method for the segmentation of aCGH data.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by E Ben-Yaacov, YC Eldar
    posted to no-tag by rdiaz on 2008-10-13 10:30:02 as ** along with 5 people daed jfr nuin talponer aviad_work
  • On the frequency of copy number variants
    Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2350-2355.
    by Iuliana Ionita-Laza, Nan M Laird, Benjamin A Raby, Scott T Weiss, Christoph Lange
    posted to no-tag by rdiaz on 2008-10-13 10:28:54 as ** along with 1 person djkt
  • Modeling genetic inheritance of copy number variations
    Nucl. Acids Res. (2 October 2008), gkn641.
    by Kai Wang, Zhen Chen, Mahlet G Tadesse, Joseph Glessner, Struan F Grant, Hakon Hakonarson, Maja Bucan, Mingyao Li
    posted to no-tag by rdiaz on 2008-10-13 10:28:50 as **
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