Registrati | Log in | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

di raylim library [72 articles]

Articoli aggiunti di recente nella biblioteca di raylim .
  • Comparing functional annotation analyses with Catmap.
    BMC Bioinformatics, Vol. 5, No. 1. (9 December 2004)
    by T Breslin, P Edén, M Krogh
    posted to gene_scoring roc by raylim on 2008-06-14 02:10:10 as ** along with 2 people and 3 groups ana ealloza structural_bioinformatics Bioinformatics BioinfoCIPF
  • ErmineJ: tool for functional analysis of gene expression data sets.
    BMC Bioinformatics, Vol. 6 (2005)
    by HK Lee, W Braynen, K Keshav, P Pavlidis
    posted to gene_ontology microarray by raylim on 2008-06-12 00:17:52 as ** along with 2 people and 1 group ealloza jdiggans BioinfoCIPF
  • Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms
    Nucleic Acids Research, Vol. 33, No. 18. (2005), pp. 5914-5923.
    by Michael Barnes, Johannes Freudenberg, Susan Thompson, Bruce Aronow, Paul Pavlidis
    posted to affy illumina microarray by raylim on 2008-06-10 21:44:52 as ** along with 1 person heliopais
  • beadarray: R classes and methods for Illumina bead-based data
    Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2183-2184.
    by Mark J Dunning, Mike L Smith, Matthew E Ritchie, Simon Tavare
    posted to illumina microarray r by raylim on 2008-06-07 01:05:47 as * along with 4 people heliopais srp33 jyuh Stew
  • affy--analysis of Affymetrix GeneChip data at the probe level.
    Bioinformatics, Vol. 20, No. 3. (12 February 2004), pp. 307-315.
    by L Gautier, L Cope, BM Bolstad, RA Irizarry
    posted to affy microarray r by raylim on 2008-06-07 00:53:31 as * along with 5 people and 1 group gupton RMGraze kengg bertelsen heliopais Plantandetc
  • Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.
    Nature, Vol. 391, No. 6669. (19 February 1998), pp. 806-811.
    by A Fire, S Xu, MK Montgomery, SA Kostas, SE Driver, CC Mello
    posted to c_elegans rnai by raylim on 2008-03-09 01:56:31 as ** along with 8 people and 2 groups czeller tharris dayjm tardigrade mtagaya shizhao benlin elfar C. elegans / WormBase Wikipedia
  • Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    by N Maeda, T Kasukawa, R Oyama, J Gough, M Frith, PG Engström, B Lenhard, RN Aturaliya, S Batalov, KW Beisel, CJ Bult, CF Fletcher, AR Forrest, M Furuno, D Hill, M Itoh, M Kanamori-Katayama, S Katayama, M Katoh, T Kawashima, J Quackenbush, T Ravasi, BZ Ring, K Shibata, K Sugiura, Y Takenaka, RD Teasdale, CA Wells, Y Zhu, C Kai, J Kawai, DA Hume, P Carninci, Y Hayashizaki
    posted to annotation cdna genome-wide mouse transcriptome by raylim on 2008-03-08 23:22:51 as ** along with 1 person xiaobeizhao
  • Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
    Nature, Vol. 420 (December 2002), pp. 563-573.
    by Y Okazaki, M Furuno, T Kasukawa, J Adachi, H Bono, S Kondo, I Nikaido, N Osato, R Saito, H Suzuki, I Yamanaka, H Kiyosawa, K Yagi, Y Tomaru, Y Hasegawa, A Nogami, C Schönbach, T Gojobori, R Baldarelli, DP Hill, C Bult, DA Hume, J Quackenbush, LM Schriml, A Kanapin, H Matsuda, S Batalov, KW Beisel, JA Blake, D Bradt, V Brusic, C Chothia, LE Corbani, S Cousins, E Dalla, TA Dragani, CF Fletcher, A Forrest, KS Frazer, T Gaasterland, M Gariboldi, C Gissi, A Godzik, J Gough, S Grimmond, S Gustincich, N Hirokawa, IJ Jackson, ED Jarvis, A Kanai, H Kawaji, Y Kawasawa, RM Kedzierski, BL King, A Konagaya, IV Kurochkin, Y Lee, B Lenhard, PA Lyons, DR Maglott, L Maltais, L Marchionni, L Mckenzie, H Miki, T Nagashima, K Numata, T Okido, WJ Pavan, G Pertea, G Pesole, N Petrovsky, R Pillai, JU Pontius, D Qi, S Ramachandran, T Ravasi, JC Reed, DJ Reed, J Reid, BZ Ring, M Ringwald, A Sandelin, C Schneider, CAM Semple, M Setou, K Shimada, R Sultana, Y Takenaka, MS Taylor, RD Teasdale, M Tomita, R Verardo, L Wagner, C Wahlestedt, Y Wang, Y Watanabe, C Wells, LG Wilming, A Wynshaw-Boris, M Yanagisawa, I Yang, L Yang, Z Yuan, M Zavolan, Y Zhu, A Zimmer
    posted to annotation cdna genome-wide mouse transcriptome by raylim on 2008-03-08 23:20:00 as **
  • Integrative annotation of 21,037 human genes validated by full-length cDNA clones.
    PLoS Biol, Vol. 2, No. 6. (June 2004)
    by T Imanishi, T Itoh, Y Suzuki, C O'Donovan, S Fukuchi, KO Koyanagi, RA Barrero, T Tamura, Y Yamaguchi-Kabata, M Tanino, K Yura, S Miyazaki, K Ikeo, K Homma, A Kasprzyk, T Nishikawa, M Hirakawa, J Thierry-Mieg, D Thierry-Mieg, J Ashurst, L Jia, M Nakao, MA Thomas, N Mulder, Y Karavidopoulou, L Jin, S Kim, T Yasuda, B Lenhard, E Eveno, Y Suzuki, C Yamasaki, J Takeda, C Gough, P Hilton, Y Fujii, H Sakai, S Tanaka, C Amid, M Bellgard, Mde F Bonaldo, H Bono, SK Bromberg, AJ Brookes, E Bruford, P Carninci, C Chelala, C Couillault, SJ de Souza, MA Debily, MD Devignes, I Dubchak, T Endo, A Estreicher, E Eyras, K Fukami-Kobayashi, GR Gopinath, E Graudens, Y Hahn, M Han, ZG Han, K Hanada, H Hanaoka, E Harada, K Hashimoto, U Hinz, M Hirai, T Hishiki, I Hopkinson, S Imbeaud, H Inoko, A Kanapin, Y Kaneko, T Kasukawa, J Kelso, P Kersey, R Kikuno, K Kimura, B Korn, V Kuryshev, I Makalowska, T Makino, S Mano, R Mariage-Samson, J Mashima, H Matsuda, HW Mewes, S Minoshima, K Nagai, H Nagasaki, N Nagata, R Nigam, O Ogasawara, O Ohara, M Ohtsubo, N Okada, T Okido, S Oota, M Ota, T Ota, T Otsuki, D Piatier-Tonneau, A Poustka, SX Ren, N Saitou, K Sakai, S Sakamoto, R Sakate, I Schupp, F Servant, S Sherry, R Shiba, N Shimizu, M Shimoyama, AJ Simpson, B Soares, C Steward, M Suwa, M Suzuki, A Takahashi, G Tamiya, H Tanaka, T Taylor, JD Terwilliger, P Unneberg, V Veeramachaneni, S Watanabe, L Wilming, N Yasuda, HS Yoo, M Stodolsky, W Makalowski, M Go, K Nakai, T Takagi, M Kanehisa, Y Sakaki, J Quackenbush, Y Okazaki, Y Hayashizaki, W Hide, R Chakraborty, K Nishikawa, H Sugawara, Y Tateno, Z Chen, M Oishi, P Tonellato, R Apweiler, K Okubo, L Wagner, S Wiemann, RL Strausberg, T Isogai, C Auffray, N Nomura, T Gojobori, S Sugano
    posted to annotation cdna_library genome-wide validation by raylim on 2008-03-08 23:18:16 as ** along with 1 person and 1 group kaspermunch Bioinformatics
  • Fast and reliable prediction of noncoding RNAs.
    Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2454-2459.
    by S Washietl, IL Hofacker, PF Stadler
    posted to ncrna prediction by raylim on 2008-03-08 23:11:04 as ** along with 9 people and 3 groups gangli evaf dayjm marcius eckart_bindewald tardigrade dquest Eonwe ilh tulip BioinfoCIPF SGU-CIPF
  • Identification and Classification of Conserved RNA Secondary Structures in the Human Genome.
    PLoS Comput Biol, Vol. 2, No. 4. (21 April 2006)
    by Jakob Skou S Pedersen, Gill Bejerano, Adam Siepel, Kate Rosenbloom, Kerstin Lindblad-Toh, Eric S S Lander, Jim Kent, Webb Miller, David Haussler
    posted to genome-wide rna rna_folding secondary_structure by raylim on 2008-03-08 23:09:43 as ** along with 11 people and 2 groups marcius eckart_bindewald tardigrade arcticrasta tabu mtagaya Eonwe ilh djkt tale hpaces BioinfoCIPF SGU-CIPF
  • Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome
    Nature Biotechnology, Vol. 23, No. 11. (04 November 2005), pp. 1383-1390.
    by Stefan Washietl, Ivo L Hofacker, Melanie Lukasser, Alexander Hüttenhofer, Peter F Stadler
    posted to ncrna rna_folding by raylim on 2008-03-08 23:07:33 as ** along with 6 people and 3 groups marcius eckart_bindewald tardigrade tabu cdawson ilh BioinfoCIPF SGU-CIPF GIG
  • Local RNA base pairing probabilities in large sequences
    Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 614-615.
    by Stephan H Bernhart, Ivo L Hofacker, Peter F Stadler
    posted to genome-wide rna_folding by raylim on 2008-03-08 23:03:02 as ** along with 1 person ilh
  • Prediction of locally stable RNA secondary structures for genome-wide surveys.
    Bioinformatics, Vol. 20, No. 2. (22 January 2004), pp. 186-190.
    by IL Hofacker, B Priwitzer, PF Stadler
    posted to genome-wide rna_folding by raylim on 2008-03-08 23:00:33 as ** along with 4 people and 1 group tharris evaf ilh reyez C. elegans / WormBase
  • RNA sequence analysis using covariance models.
    Nucleic Acids Res, Vol. 22, No. 11. (11 June 1994), pp. 2079-2088.
    by SR Eddy, R Durbin
    posted to covariance_models ncrna rna rna_folding by raylim on 2008-03-08 22:52:52 as ** along with 4 people and 1 group evaf arcticrasta vwchan elfar beta
  • Stochastic context-free grammars for modeling RNA
    System Sciences, 1994. Vol.V: Biotechnology Computing, Proceedings of the Twenty-Seventh Hawaii International Conference on, Vol. 5 (1994), pp. 284-293.
    by Y Sakakibara, M Brown, RC Underwood, IS Mian, D Haussler
    posted to rna rna_folding scfgs by raylim on 2008-03-08 22:51:41 as **
  • Rfam: annotating non-coding RNAs in complete genomes.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by S Griffiths-Jones, S Moxon, M Marshall, A Khanna, SR Eddy, A Bateman
    posted to database ncrna by raylim on 2008-03-08 22:49:13 as ** along with 6 people ppgardne mtagaya Hosna dandaman austin eskay
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to gene_coexpression by raylim on 2008-03-08 22:35:42 as ** along with 14 people and 2 groups pengchy jiny maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g sgoetz wilbur jo_davies nedwards dragonrez GeschwindLab Indigene
  • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
    Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255.
    by Joshua M Stuart, Eran Segal, Daphne Koller, Stuart K Kim
    posted to gene_coexpression by raylim on 2008-03-08 07:20:32 as ** along with 20 people and 7 groups carlk saket pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav wnpx neveaire macle lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
  • Non-coding RNAs: hope or hype?
    Trends in Genetics, Vol. 21, No. 5. (May 2005), pp. 289-297.
    by Alexander Huttenhofer, Peter Schattner, Norbert Polacek
    posted to ncrna by raylim on 2008-03-08 05:12:55 as *** along with 4 people setar eckart_bindewald arcticrasta eskay
  • The transcriptional landscape of the mammalian genome.
    Science, Vol. 309, No. 5740. (2 September 2005), pp. 1559-1563.
    by P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells, R Kodzius, K Shimokawa, VB Bajic, SE Brenner, S Batalov, AR Forrest, M Zavolan, MJ Davis, LG Wilming, V Aidinis, JE Allen, A Ambesi-Impiombato, R Apweiler, RN Aturaliya, TL Bailey, M Bansal, L Baxter, KW Beisel, T Bersano, H Bono, AM Chalk, KP Chiu, V Choudhary, A Christoffels, DR Clutterbuck, ML Crowe, E Dalla, BP Dalrymple, B de Bono, G Della Gatta, D di Bernardo, T Down, P Engstrom, M Fagiolini, G Faulkner, CF Fletcher, T Fukushima, M Furuno, S Futaki, M Gariboldi, P Georgii-Hemming, TR Gingeras, T Gojobori, RE Green, S Gustincich, M Harbers, Y Hayashi, TK Hensch, N Hirokawa, D Hill, L Huminiecki, M Iacono, K Ikeo, A Iwama, T Ishikawa, M Jakt, A Kanapin, M Katoh, Y Kawasawa, J Kelso, H Kitamura, H Kitano, G Kollias, SP Krishnan, A Kruger, SK Kummerfeld, IV Kurochkin, LF Lareau, D Lazarevic, L Lipovich, J Liu, S Liuni, S McWilliam, M Madan Babu, M Madera, L Marchionni, H Matsuda, S Matsuzawa, H Miki, F Mignone, S Miyake, K Morris, S Mottagui-Tabar, N Mulder, N Nakano, H Nakauchi, P Ng, R Nilsson, S Nishiguchi, S Nishikawa, F Nori, O Ohara, Y Okazaki, V Orlando, KC Pang, WJ Pavan, G Pavesi, G Pesole, N Petrovsky, S Piazza, J Reed, JF Reid, BZ Ring, M Ringwald, B Rost, Y Ruan, SL Salzberg, A Sandelin, C Schneider, C Schönbach, K Sekiguchi, CA Semple, S Seno, L Sessa, Y Sheng, Y Shibata, H Shimada, K Shimada, D Silva, B Sinclair, S Sperling, E Stupka, K Sugiura, R Sultana, Y Takenaka, K Taki, K Tammoja, SL Tan, S Tang, MS Taylor, J Tegner, SA Teichmann, HR Ueda, E van Nimwegen, R Verardo, CL Wei, K Yagi, H Yamanishi, E Zabarovsky, S Zhu, A Zimmer, W Hide, C Bult, SM Grimmond, RD Teasdale, ET Liu, V Brusic, J Quackenbush, C Wahlestedt, JS Mattick, DA Hume, C Kai, D Sasaki, Y Tomaru, S Fukuda, M Kanamori-Katayama, M Suzuki, J Aoki, T Arakawa, J Iida, K Imamura, M Itoh, T Kato, H Kawaji, N Kawagashira, T Kawashima, M Kojima, S Kondo, H Konno, K Nakano, N Ninomiya, T Nishio, M Okada, C Plessy, K Shibata, T Shiraki, S Suzuki, M Tagami, K Waki, A Watahiki, Y Okamura-Oho, H Suzuki, J Kawai, Y Hayashizaki, ,
    posted to mouse transcriptome by raylim on 2008-03-08 04:57:43 as ** along with 16 people and 1 group myrtilus setar miguel Cortel jwortman jfr tuck lyongu eckart_bindewald troels_marstrand kaspermunch balicea forbiddenfaith99 mtagaya olympos gjuggler Bioinformatics
  • Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome.
    Genome Res, Vol. 16, No. 1. (January 2006), pp. 11-19.
    by T Ravasi, H Suzuki, KC Pang, S Katayama, M Furuno, R Okunishi, S Fukuda, K Ru, MC Frith, MM Gongora, SM Grimmond, DA Hume, Y Hayashizaki, JS Mattick
    posted to experimental_validation mouse ncrna by raylim on 2008-03-08 04:50:31 as *** along with 2 people alexg mtagaya
  • SimulFold: Simultaneously Inferring RNA Structures Including Pseudoknots, Alignments, and Trees Using a Bayesian MCMC Framework
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e149.
    by Irmtraud M Meyer, István Miklós
    posted to pseudoknots rna secondary_structure by raylim on 2007-09-20 19:53:04 as *** along with 3 people zwang cabbagezs bertelsen
  • Pure multiple RNA secondary structure alignments: a progressive profile approach.
    IEEE/ACM Trans Comput Biol Bioinform, Vol. 1, No. 1. (r 2004), pp. 53-62.
    by M Höchsmann, B Voss, R Giegerich
    posted to alignments rna_forester secondary_structure by raylim on 2007-09-11 05:59:50 as ** along with 1 person emidio_capriotti
  • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2688-2690.
    by A Stamatakis
    posted to no-tag by raylim on 2007-04-30 07:06:46 as *
  • Unexpected point mutations activate cryptic 3' splice sites by perturbing a natural secondary structure within a yeast intron.
    Genes Dev., Vol. 5, No. 7. (1 July 1991), pp. 1252-1263.
    by JO Deshler, JJ Rossi
    posted to 3ss intron secondary_structure splice_site by raylim on 2007-04-30 05:52:28 as **
  • An Intronic Splicing Enhancer Element in Survival Motor Neuron (SMN) Pre-mRNA
    J. Biol. Chem., Vol. 278, No. 18. (25 April 2003), pp. 15825-15831.
    by Hidenobu Miyaso, Masayo Okumura, Shinichi Kondo, Satoshi Higashide, Hiroshi Miyajima, Kazunori Imaizumi
    posted to intronic_splicing_enhancer pre_mrna smn by raylim on 2007-04-30 05:26:10 as **
  • Genetic basis of variable exon 9 skipping in cystic fibrosis transmembrane conductance regulator mRNA
    Nat Genet, Vol. 3, No. 2. (February 1993), pp. 151-156.
    by Chin-Shyan Chu, Bruce C Trapnell, Sheila Curristin, Garry R Cutting, Ronald G Crystal
    posted to cftr exon_skipping by raylim on 2007-04-30 03:55:00 as **
  • Structure of tau exon 10 splicing regulatory element RNA and destabilization by mutations of frontotemporal dementia and parkinsonism linked to chromosome 17
    PNAS, Vol. 96, No. 14. (6 July 1999), pp. 8229-8234.
    by Luca Varani, Masato Hasegawa, Maria G Spillantini, Michael J Smith, Jill R Murrell, Bernardino Ghetti, Aaron Klug, Michel Goedert, Gabriele Varani
    posted to exon rna secondary_structure splicing_regulatory_element by raylim on 2007-04-30 03:16:59 as **
  • The iStem, a Long-Range RNA Secondary Structure Element Required for Efficient Exon Inclusion in the Drosophila Dscam Pre-mRNA
    Mol. Cell. Biol., Vol. 25, No. 23. (1 December 2005), pp. 10251-10260.
    by Jenny M Kreahling, Brenton R Graveley
    posted to dscam exon_inclusion intron pre_mrna secondary_structure by raylim on 2007-04-30 02:57:08 as **
  • Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 52-55.
    by Ada Hamosh, Alan F Scott, Joanna Amberger, Carol Bocchini, David Valle, Victor A Mckusick
    posted to database genetic_disorders omim by raylim on 2007-04-29 22:49:09 as *
  • The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch
    Molecular Cell, Vol. 18, No. 1. (1 April 2005), pp. 49-60.
    by Kenneth J Wickiser, Wade C Winkler, Ronald R Breaker, Donald M Crothers
    posted to riboswitch transcription_speed by raylim on 2007-04-28 09:36:05 as **
  • hnRNP proteins and the biogenesis of mRNA.
    Annu Rev Biochem, Vol. 62 (1993), pp. 289-321.
    by G Dreyfuss, MJ Matunis, S Piñol-Roma, CG Burd
    posted to hnrnp premrna_binding_elements by raylim on 2007-04-28 08:45:37 as **
  • Secondary Structure of the Ribosome Binding Site Determines Translational Efficiency: A Quantitative Analysis
    PNAS, Vol. 87, No. 19. (1 October 1990), pp. 7668-7672.
    by Mh de Smit, J van Duin
    posted to rbs secondary_structure translational_efficiency by raylim on 2007-04-28 07:46:37 as **
  • Regulation of Fibronectin EDA Exon Alternative Splicing: Possible Role of RNA Secondary Structure for Enhancer Display
    Mol. Cell. Biol., Vol. 19, No. 4. (1 April 1999), pp. 2657-2671.
    by Andres F Muro, Massimo Caputi, Rajalakshmi Pariyarath, Franco Pagani, Emanuele Buratti, Francisco E Baralle
    posted to alternative_splicing enhancer_display exon secondary_structure by raylim on 2007-04-28 06:37:00 as **
  • RNA Folding Affects the Recruitment of SR Proteins by Mouse and Human Polypurinic Enhancer Elements in the Fibronectin EDA Exon
    Mol. Cell. Biol., Vol. 24, No. 3. (1 February 2004), pp. 1387-1400.
    by Emanuele Buratti, Andres F Muro, Maurizio Giombi, Daniel Gherbassi, Alessandra Iaconcig, Francisco E Baralle
    posted to exon protein_recruitment rna_folding by raylim on 2007-04-28 06:12:06 as ***
  • A periodic pattern of mRNA secondary structure created by the genetic code
    Nucl. Acids Res., Vol. 34, No. 8. (8 May 2006), pp. 2428-2437.
    by Svetlana A Shabalina, Aleksey Y Ogurtsov, Nikolay A Spiridonov
    posted to code genetic mrna periodic_pattern secondary_structure by raylim on 2007-04-28 06:09:53 as read along with 2 people and 1 group eckart_bindewald penka Nie
  • LISTENING TO SILENCE AND UNDERSTANDING NONSENSE: EXONIC MUTATIONS THAT AFFECT SPLICING
    Nat Rev Genet, Vol. 3, No. 4. (April 2002), pp. 285-298.
    by Luca Cartegni, Shern L Chew, Adrian R Krainer
    posted to exonic_mutations splicing by raylim on 2007-04-28 06:01:41 as *
  • The genetic code is nearly optimal for allowing additional information within protein-coding sequences.
    Genome Res (9 February 2007)
    by Shalev Itzkovitz, Uri Alon
    posted to additional_info protein_coding by raylim on 2007-04-28 05:54:24 as *** along with 9 people and 3 groups gpalidwor madhadron msierk raiyar grahamc Minty gwenknight bpcusack ptrobajo Bioinformatics ParkinsonLab_at_MaRS steinmetzlab
  • The Ensembl genome database project
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 38-41.
    by T Hubbard, D Barker, E Birney, G Cameron, Y Chen, L Clark, T Cox, J Cuff, V Curwen, T Down, R Durbin, E Eyras, J Gilbert, M Hammond, L Huminiecki, A Kasprzyk, H Lehvaslaiho, P Lijnzaad, C Melsopp, E Mongin, R Pettett, M Pocock, S Potter, A Rust, E Schmidt, S Searle, G Slater, J Smith, W Spooner, A Stabenau, J Stalker, E Stupka, A Ureta-Vidal, I Vastrik, M Clamp
    posted to ensembl genome_database by raylim on 2007-04-28 01:11:36 as * along with 4 people and 1 group incovoma kynn CitoJam rvosa FAB-lab
  • PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by Y Byun, K Han
    posted to pseudoviewer secondary_structure by raylim on 2007-04-28 00:31:34 as *
  • Multiple sequence alignment with the Clustal series of programs.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3497-3500.
    by R Chenna, H Sugawara, T Koike, R Lopez, TJ Gibson, DG Higgins, JD Thompson
    posted to clustal multiple_sequence_alignment by raylim on 2007-04-24 07:31:40 as * along with 5 people and 1 group miguel chad_davis beatrizfernandez xingxu marck Microbial-Ecology
  • Secondary structure prediction for aligned RNA sequences.
    J Mol Biol, Vol. 319, No. 5. (21 June 2002), pp. 1059-1066.
    by IL Hofacker, M Fekete, PF Stadler
    posted to prediction rnaalifold secondary_structure by raylim on 2007-04-23 03:46:20 as *** along with 7 people evaf balajis eckart_bindewald ppgardne arcticrasta ilh xiaobeizhao
  • Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans.
    Eukaryot Cell, Vol. 5, No. 5. (May 2006), pp. 789-793.
    by JE Stajich, FS Dietrich
    posted to genetic_disease intron_loss by raylim on 2007-04-23 03:03:08 as read along with 3 people and 3 groups stajich dalloliogm seitentaisei Web2 splicing yeast
  • Genome-wide detection of alternative splicing in expressed sequences of human genes.
    Nucleic Acids Res, Vol. 29, No. 13. (1 July 2001), pp. 2850-2859.
    by B Modrek, A Resch, C Grasso, C Lee
    posted to alternative_splicing ests by raylim on 2007-03-27 03:03:35 as ** along with 4 people and 1 group dchughes kaspermunch frohike antonkratz Bioinformatics
  • Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases
    Trends in Biochemical Sciences, Vol. 25, No. 3. (1 March 2000), pp. 106-110.
    by Benjamin J Blencowe
    posted to ese genetic_disease mechanism by raylim on 2007-03-27 01:58:48 as **
  • Regulation of mRNA translation by 5′- and 3′-UTR-binding factors
    Trends in Biochemical Sciences, Vol. 28, No. 4. (April 2003), pp. 182-188.
    by Gavin S Wilkie, Kirsten S Dickson, Nicola K Gray
    posted to translation_regulation by raylim on 2007-03-27 01:06:47 as ** along with 1 person RMGraze
  • Control of eukaryotic protein synthesis by upstream open reading frames in the 5'-untranslated region of an mRNA.
    Biochem J, Vol. 367, No. Pt 1. (1 October 2002), pp. 1-11.
    by HA Meijer, AA Thomas
    posted to translation_initiation_control by raylim on 2007-03-27 01:05:38 as ** along with 1 person evaf
  • Control of translation initiation in animals.
    Annu Rev Cell Dev Biol, Vol. 14 (1998), pp. 399-458.
    by NK Gray, M Wickens
    posted to translation_initiation_control by raylim on 2007-03-27 01:04:27 as **