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di ras library [40 articles]

Articoli aggiunti di recente nella biblioteca di ras .
  • Efficient thermal rate constant calculation for rare event systems
    The Journal of Chemical Physics, Vol. 118, No. 3. (2003), pp. 1085-1088.
    by SA Corcelli, JA Rahman, JC Tully
    posted to rates rare-event-system by ras on 2008-11-03 15:34:01 as ****
  • Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm
    Biophys. J. (30 January 2008), biophysj.107.116053.
    by Douglas Ridgway, Gordon Broderick, Ana Lopez-Campistrous, Melania Ru'aini, Philip Winter, Matthew Hamilton, Pierre Boulanger, Andriy Kovalenko, Michael J Ellison
    posted to simulation kinetics crowding coarse-grained by ras on 2008-10-31 15:49:20 as ***** along with 4 people and 1 group ocs paulschlesinger sobolevnrm arjunan baker-group
  • Molecular crowding enhances native state stability and refolding rates of globular proteins
    PNAS, Vol. 102, No. 13. (29 March 2005), pp. 4753-4758.
    by Margaret S Cheung, Dmitri Klimov, D Thirumalai
    posted to stability folding crowding by ras on 2008-10-20 13:13:39 as **** along with 2 people cactus sikorski
  • Crowded, cell-like environment induces shape changes in aspherical protein
    Proceedings of the National Academy of Sciences, Vol. 105, No. 33. (2008), pp. 11754-11759.
    by Dirar Homouz, Michael Perham, Antonios Samiotakis, Margaret S Cheung, Pernilla Wittung-Stafshede
    posted to ficoll-70 crowding by ras on 2008-10-20 13:12:14 as **** along with 2 people TOchi kentsis
  • Determination of atomic desolvation energies from the structures of crystallized proteins.
    J Mol Biol, Vol. 267, No. 3. (4 April 1997), pp. 707-726.
    by C Zhang, G Vasmatzis, JL Cornette, C DeLisi
    posted to energy desolvation by ras on 2008-10-02 11:53:25 as ** along with 3 people ffranca bluvsh1 GermanErlenkamp
  • Free energy landscapes of encounter complexes in protein-protein association.
    Biophys J, Vol. 76, No. 3. (March 1999), pp. 1166-1178.
    by CJ Camacho, Z Weng, S Vajda, C DeLisi
    posted to free-energy encounter-complex by ras on 2008-09-30 18:20:55 as ***** along with 2 people bicko dgront
  • The kinetics of protein-protein recognition
    Proteins: Structure, Function, and Genetics, Vol. 28, No. 2. (1997), pp. 153-161.
    by Joël Janin
    posted to kinetics barnase-barstar by ras on 2008-09-30 17:37:20 as read
  • Kinetics of Desolvation-Mediated Protein-Protein Binding
    Biophys. J., Vol. 78, No. 3. (1 March 2000), pp. 1094-1105.
    by Carlos J Camacho, SR Kimura, Charles Delisi, Sandor Vajda
    posted to desolvation brownian-dynamics by ras on 2008-09-30 15:24:17 as *****
  • Enhancement of protein-protein association rate by interaction potential: accuracy of prediction based on local Boltzmann factor.
    Biophysical journal, Vol. 73, No. 5. (November 1997), pp. 2441-2445.
    by HX Zhou
    posted to rates encounter-complex by ras on 2008-09-30 14:45:40 as read
  • CHARMM: The Energy Function and Its Parameterization with an Overview of the Program
    Vol. 1 (1998), pp. 271-277.
    by AD Mackerel, CL Brooks, L Nilsson, B Roux, Y Won, M Karplus
    edited by Schleyer
    posted to charmm by ras on 2008-05-28 18:47:32 as **
  • CHARMM: A Program for Macromolecular Energy, Minimization, and Dynamics Calculations
    Journal of Computational Chemistry, Vol. 4 (1983), pp. 187-217.
    by BR Brooks, RE Bruccoleri, DJ Olafson, DJ States, S Swaminathan, M Karplus
    posted to charmm by ras on 2008-05-28 18:47:32 as **
  • Single-Molecule Approach to Molecular Biology in Living Bacterial Cells
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 417-444.
    by Sunney X Xie, Paul J Choi, Gene W Li, Nam K Lee, Giuseppe Lia
    posted to microscopy single-molecule by ras on 2008-05-28 17:47:22 as ** along with 2 people and 1 group ocs samjlord moernerlab
  • Rapid, electrostatically assisted association of proteins
    Nat Struct Mol Biol, Vol. 3, No. 5. (May 1996), pp. 427-431.
    by Gideon Schreiber, Alan R Fersht
    posted to barnase-barstar electrostatics by ras on 2008-05-28 17:43:44 as **
  • Optimization of binding electrostatics: charge complementarity in the barnase-barstar protein complex.
    Protein science : a publication of the Protein Society, Vol. 10, No. 2. (February 2001), pp. 362-377.
    by LP Lee, B Tidor
    posted to barnase-barstar electrostatics by ras on 2008-05-28 17:41:59 as **
  • The effect of volume occupancy upon the thermodynamic activity of proteins: some biochemical consequences
    Molecular and Cellular Biochemistry, Vol. 55, No. 2. (1983), pp. 119-140.
    by Allen P Minton
    posted to occupancy by ras on 2008-05-28 17:31:16 as **
  • Experimental assignment of the structure of the transition state for the association of barnase and barstar
    Journal of Molecular Biology, Vol. 308, No. 1. (20 April 2001), pp. 69-77.
    by Christian Frisch, Alan R Fersht, Gideon Schreiber
    posted to barnase-barstar encounter-complex by ras on 2008-05-28 17:17:49 as ****
  • Interaction of standard mechanism, canonical protein inhibitors with serine proteinases
    (2000)
    by Michael Laskowski, MA Qasim, Stephen M Lu
    edited by Colin Kleanthous
    posted to barnase-barstar by ras on 2008-05-28 17:17:32 as read
  • Protein-protein interaction: a genetic selection for compensating mutations at the barnase-barstar interface.
    Proc Natl Acad Sci U S A, Vol. 93, No. 6. (19 March 1996), pp. 2343-2347.
    by M Jucovic, RW Hartley
    posted to barnase-barstar electrostatics by ras on 2008-05-28 16:41:47 as ** along with 1 person cjeans
  • Rapid, electrostatically assisted association of proteins.
    Nat Struct Biol, Vol. 3, No. 5. (May 1996), pp. 427-431.
    by G Schreiber, AR Fersht
    posted to barnase-barstar electrostatics by ras on 2008-05-28 16:27:55 as ** along with 1 person apaydin
  • How optimal are the binding energetics of barnase and barstar?
    Biophys J, Vol. 87, No. 3. (September 2004), pp. 1618-1630.
    by T Wang, S Tomic, RR Gabdoulline, RC Wade
    posted to barnase-barstar electrostatics by ras on 2008-05-28 16:27:12 as ** along with 1 person chad_davis
  • Barnase-barstar interaction
    Methods in Enzymology, Vol. 341 (2001), pp. 599-611.
    by Robert W Hartley
    posted to barnase-barstar by ras on 2008-05-28 16:24:05 as read
  • Welcome to CAPRI: A Critical Assessment of PRedicted Interactions
    Proteins: Structure, Function, and Genetics, Vol. 47, No. 3. (2002), 257.
    by Joël Janin
    posted to capri by ras on 2008-05-28 16:02:05 as *
  • Atomically Detailed Simulations of Concentrated Protein Solutions: The Effects of Salt, pH, Point Mutations, and Protein Concentration in Simulations of 1000-Molecule Systems
    J. Am. Chem. Soc., Vol. 128, No. 37. (20 September 2006), pp. 12098-12110.
    by SR Mcguffee, AH Elcock
    posted to crowding simulation by ras on 2008-05-27 17:52:34 as read
  • Macromolecular crowding: qualitative and semiquantitative successes, quantitative challenges
    Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, Vol. 1649, No. 2. (30 July 2003), pp. 127-139.
    by Damien Hall, Allen P Minton
    posted to crowding rates theoretical by ras on 2008-05-27 17:48:29 as read
  • Macromolecular Crowding and Confinement: Biochemical, Biophysical, and Potential Physiological Consequences
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 375-397.
    by Huan X Zhou, German Rivas, Allen P Minton
    posted to crowding rates by ras on 2008-05-27 17:13:59 as ***** along with 1 person margaritis
  • Calculation of protein-ligand binding affinities.
    Annu Rev Biophys Biomol Struct, Vol. 36 (2007), pp. 21-42.
    by MK Gilson, HX Zhou
    posted to complex crowding rates by ras on 2008-05-27 17:09:11 as **** along with 9 people and 2 groups jmccammon bmduggan dimka neils hmk ashaytan cchang boris_aguilar qaiser_fatmi McCammon group
  • Electrostatic properties of cowpea chlorotic mottle virus and cucumber mosaic virus capsids
    Biopolymers, Vol. 82, No. 2. (2006), pp. 106-120.
    by Robert Konecny, Joanna Trylska, Florence Tama, Deqiang Zhang, Nathan A Baker, Charles, JA Mccammon
    posted to electrostatics virus by ras on 2008-05-27 16:46:02 as **
  • Simulation of the diffusional association of barnase and barstar.
    Biophys J, Vol. 72, No. 5. (May 1997), pp. 1917-1929.
    by RR Gabdoulline, RC Wade
    posted to barnase-barstar diffusion encounter by ras on 2008-05-27 16:24:51 as read along with 1 person apaydin
  • Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell
    Science, Vol. 316, No. 5828. (25 May 2007), pp. 1191-1194.
    by Johan Elf, Gene-Wei Li, Sunney X Xie
    posted to dynamics transcription-factor by ras on 2008-05-27 16:22:15 as ** along with 7 people and 3 groups jjray dpollard madhadron balabu nickluscombe samjlord austin EisenLab EBI-regulation moernerlab
  • Life in a crowded world
    EMBO Reports, Vol. 5, No. 1. (2004), pp. 23-27.
    by Germán Rivas, Frank Ferrone, Judith Herzfeld
    posted to crowding upg-report by ras on 2008-05-27 15:06:11 as read
  • Protein interactions: two methods for assessment of the reliability of high throughput observations.
    Mol Cell Proteomics, Vol. 1, No. 5. (May 2002), pp. 349-356.
    by CM Deane, Salwiński, I Xenarios, D Eisenberg
    posted to high-throughput upg-report yeast-2-hybrid by ras on 2008-05-27 14:59:53 as ** along with 11 people and 1 group zdai tmmurali lfriedl bluto henschel ruvido iris_2001 shikin cdeane Pao-Yang chasmand kdl
  • Estimation of macromolecule concentrations and excluded volume effects for the cytoplasm of Escherichia coli
    Journal of Molecular Biology, Vol. 222, No. 3. (5 December 1991), pp. 599-620.
    by Steven B Zimmerman, Stefan O Trach
    posted to concentration crowding ecoli by ras on 2008-05-08 11:51:24 as *** along with 1 person baaden
  • Bridging from molecular simulation to biochemical networks.
    Curr Opin Struct Biol, Vol. 17, No. 2. (April 2007), pp. 166-172.
    by M Stein, RR Gabdoulline, RC Wade
    posted to molecular review simulation by ras on 2008-03-20 17:20:37 as read along with 6 people ocs aqeel Borelli cmmorel julius higueruelo
  • Macromolecular Architecture in Eukaryotic Cells Visualized by Cryoelectron Tomography
    Science, Vol. 298, No. 5596. (8 November 2002), pp. 1209-1213.
    by Ohad Medalia, Igor Weber, Achilleas S Frangakis, Daniela Nicastro, Gunther Gerisch, Wolfgang Baumeister
    posted to crowding cryo-et cytoplasm by ras on 2008-03-20 12:40:24 as ****
  • Reaction kinetics in intracellular environments with macromolecular crowding: simulations and rate laws.
    Prog Biophys Mol Biol, Vol. 85, No. 2-3. (l 2004), pp. 235-260.
    by S Schnell, TE Turner
    posted to crowding ode rates simulation by ras on 2008-03-19 18:17:49 as **** along with 3 people and 1 group m_j schnell csanford IU_Informatics_CX
  • Macromolecular crowding: obvious but underappreciated
    Trends in Biochemical Sciences, Vol. 26, No. 10. (1 October 2001), pp. 597-604.
    by John R Ellis
    posted to aggregation chaperones crowding groelgroes by ras on 2008-03-19 15:45:23 as ***** along with 1 person ocs
  • Electrochemical structure of the crowded cytoplasm
    Trends in Biochemical Sciences, Vol. 30, No. 10. (October 2005), pp. 536-541.
    by Jan J Spitzer, Bert Poolman
    posted to crowding electrostatics theoretical by ras on 2008-03-19 15:42:01 as ****
  • A Detailed Thermodynamic Analysis of Ras/Effector Complex Interfaces
    Journal of Molecular Biology, Vol. 340, No. 5. (23 July 2004), pp. 1039-1058.
    by Christina Kiel, Luis Serrano, Christian Herrmann
    posted to complex dynamics effector ras by ras on 2008-03-13 10:34:21 as **** along with 1 person bicko
  • A consensus view of protein dynamics.
    Proc Natl Acad Sci U S A (10 January 2007)
    by Manuel Rueda, Carles Ferrer-Costa, Tim Meyer, Alberto Pérez, Jordi Camps, Adam Hospital, Josep Lluis L Gelpí, Modesto Orozco
    posted to tests by ras on 2008-03-12 18:13:47 as ** along with 13 people and 2 groups bmduggan lna dimka aqeel aswin rabio grahamc hmk zwang biehl Ema phoenixzxl LamBras ParkinsonLab_at_MaRS The BMM Dome
  • Microtubules
    posted to microtubule by ras on 2008-03-12 16:57:47 as **
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