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di raiyar prediction [36 articles]

Articoli aggiunti di recente alla biblioteca di raiyar classificati sotto il tag prediction. You can also see everyone's prediction.
  • A Bayesian system integrating expression data with sequence patterns for localizing proteins: comprehensive application to the yeast genome
    Journal of Molecular Biology, Vol. 301, No. 4. (25 August 2000), pp. 1059-1075.
    by Amar Drawid, Mark Gerstein
    posted to yeast statistics prediction parts-list methodspaper localization integration example by raiyar on 2008-10-01 13:11:47 as ** along with 1 person and 1 group lfriedl kdl
  • Improved prediction of signal peptides: SignalP 3.0.
    Journal of molecular biology, Vol. 340, No. 4. (16 July 2004), pp. 783-795.
    by JD Bendtsen, H Nielsen, G von Heijne, S Brunak
    posted to tool prediction mitotarget methodspaper localization by raiyar on 2008-09-29 15:37:50 as ** along with 1 person sebk
  • Adaptation of protein surfaces to subcellular location.
    Journal of molecular biology, Vol. 276, No. 2. (20 February 1998), pp. 517-525.
    by MA Andrade, SI O'Donoghue, B Rost
    posted to target proteomics prediction mitotarget methodspaper localization by raiyar on 2008-09-29 15:24:31 as read
  • pTARGET [corrected] a new method for predicting protein subcellular localization in eukaryotes.
    Bioinformatics (Oxford, England), Vol. 21, No. 21. (1 November 2005), pp. 3963-3969.
    by C Guda, S Subramaniam
    posted to tool prediction mitotarget methodspaper localization by raiyar on 2008-09-29 15:15:05 as **
  • Support vector machine approach for protein subcellular localization prediction.
    Bioinformatics (Oxford, England), Vol. 17, No. 8. (August 2001), pp. 721-728.
    by S Hua, Z Sun
    posted to prediction parts-list mitotarget methodspaper localization by raiyar on 2008-09-29 14:44:30 as **
  • AMPDB: the Arabidopsis Mitochondrial Protein Database.
    Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005)
    by JL Heazlewood, AH Millar
    posted to tool prediction parts-list mitotarget mitochondria methodspaper db by raiyar on 2008-09-29 14:24:16 as **
  • Locating proteins in the cell using TargetP, SignalP and related tools.
    Nat Protoc, Vol. 2, No. 4. (2007), pp. 953-971.
    by O Emanuelsson, S Brunak, G von Heijne, H Nielsen
    posted to tool review prediction mitotarget methodspaper localization by raiyar on 2008-09-29 13:17:37 as ** along with 4 people nlapalu jyuh ptrobajo mdstobbe
  • Predicting subcellular localization of proteins based on their N-terminal amino acid sequence.
    J Mol Biol, Vol. 300, No. 4. (21 July 2000), pp. 1005-1016.
    by O Emanuelsson, H Nielsen, S Brunak, G von Heijne
    posted to tool target prediction mitotarget methodspaper localization by raiyar on 2008-09-29 13:16:43 as ** along with 4 people and 2 groups nlapalu bpcusack ana mloewer structural_bioinformatics Bioinformatics
  • Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins.
    Plant Cell, Vol. 16, No. 1. (January 2004), pp. 241-256.
    by JL Heazlewood, JS Tonti-Filippini, AM Gout, DA Day, J Whelan, AH Millar
    posted to target proteomics prediction parts-list mitotarget mitochondria methodspaper localization by raiyar on 2008-09-29 13:05:41 as ** along with 1 person dandaman
  • Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function.
    Genome biology, Vol. 9 Suppl 1 (2008)
    by W Tian, LV Zhang, M Taşan, FD Gibbons, OD King, J Park, Z Wunderlich, JM Cherry, FP Roth
    posted to ym2008 yeast tool prediction network methodspaper integration genomics by raiyar on 2008-09-05 13:04:56 as ****
  • Drug Target Identification Using Side-Effect Similarity
    Science, Vol. 321, No. 5886. (11 July 2008), pp. 263-266.
    by Monica Campillos, Michael Kuhn, Anne-Claude Gavin, Lars J Jensen, Peer Bork
    posted to analysis chemgen compound example genomics ht interaction network prediction target by raiyar on 2008-08-11 16:21:27 as ***** along with 11 people jfr zimbo1 bpcusack jmuhlich aheilbut larsjuhljensen tmmurali askrajiv reyez roys ajaymalik
  • A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 112-123.
    by David J Pagliarini, Sarah E Calvo, Betty Chang, Sunil A Sheth, Scott B Vafai, Shao-En Ong, Geoffrey A Walford, Canny Sugiana, Avihu Boneh, William K Chen, David E Hill, Marc Vidal, James G Evans, David R Thorburn, Steven A Carr, Vamsi K Mootha
    posted to complex db disease genomics human integration methodspaper mitochondria mouse parts-list prediction ym2008 by raiyar on 2008-08-04 21:10:43 as ** along with 4 people brianb neils ptrobajo mdstobbe
  • Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 531-537.
    by TR Golub, DK Slonim, P Tamayo, C Huard, M Gaasenbeek, JP Mesirov, H Coller, ML Loh, JR Downing, MA Caligiuri, CD Bloomfield, ES Lander
    posted to analysis basis cancer disease ellstalk expression prediction by raiyar on 2008-07-10 23:05:57 as read along with 15 people and 1 group ctaraujo gabe_rosser ihpark winterschlaefer hhhhssss balajis sdvillal archroad giovanni santhosh ugengma wtribbey jo_davies akastrin zchen GeschwindLab
  • Walking the Interactome for Prioritization of Candidate Disease Genes
    The American Journal of Human Genetics, Vol. In Press, Corrected Proof
    by Sebastian Kohler, Sebastian Bauer, Denise Horn, Peter N Robinson
    posted to disease genetic interaction methodspaper network prediction by raiyar on 2008-06-23 15:12:21 as ** along with 4 people jfr kluck daed jyuh
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to disease ellstalk methodspaper network prediction proteomics by raiyar on 2008-06-19 15:46:55 as *** along with 21 people kaarsinogen giovenko jyuh balicea tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo zwang
  • Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi.
    Nature, Vol. 414, No. 6862. (22 November 2001), pp. 450-453.
    by MD Katinka, S Duprat, E Cornillot, G Méténier, F Thomarat, G Prensier, V Barbe, E Peyretaillade, P Brottier, P Wincker, F Delbac, H El Alaoui, P Peyret, W Saurin, M Gouy, J Weissenbach, CP Vivarès
    posted to evolution genomics methodspaper mitochondria parts-list prediction by raiyar on 2008-04-25 15:19:22 as ** along with 1 person alexl
  • A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell
    Cell, Vol. 131, No. 7. (28 December 2007), pp. 1354-1365.
    by Richard Bonneau, Marc T Facciotti, David J Reiss, Amy K Schmid, Min Pan, Amardeep Kaur, Vesteinn Thorsson, Paul Shannon, Michael H Johnson, Christopher J Bare, William Longabaugh, Madhavi Vuthoori, Kenia Whitehead, Aviv Madar, Lena Suzuki, Tetsuya Mori, Dong-Eun Chang, Jocelyne Diruggiero, Carl H Johnson, Leroy Hood, Nitin S Baliga
    posted to methodspaper model network prediction by raiyar on 2008-04-11 17:03:14 as ** along with 8 people edwardmorrissey jyuh tmmurali oelemento emptyhb megraw roys Borelli
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to genomics integration interaction methodspaper prediction by raiyar on 2008-04-11 14:11:32 as ** along with 19 people and 2 groups Robinder lfriedl balajis opheliav yuval wnpx nickluscombe ruvido massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 carlk frohike kdl EBI-regulation
  • KEGG for linking genomes to life and the environment
    Nucl. Acids Res. (12 December 2007), gkm882.
    by Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi
    posted to bioinformatics db genomics interaction metabolic methodspaper prediction systems tool by raiyar on 2008-04-11 13:29:06 as ** along with 11 people reyez namunet irenas jyuh barriot renatomilani shung hpaces massivemayhem natstreet TheresaNiederberger
  • Computational prediction of subcellular localization.
    Methods Mol Biol, Vol. 390 (2007), pp. 429-466.
    by K Nakai, P Horton
    posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 12:47:55 as **
  • MitoProt, a Macintosh application for studying mitochondrial proteins.
    Comput Appl Biosci, Vol. 11, No. 4. (August 1995), pp. 441-447.
    by MG Claros
    posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:12:26 as **
  • Predotar: A tool for rapidly screening proteomes for <B><I>N</I></B>-terminal targeting sequences
    PROTEOMICS, Vol. 4, No. 6. (2004), pp. 1581-1590.
    by Ian Small, Nemo Peeters, Fabrice Legeai, Claire Lurin
    posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:10:50 as **
  • WoLF PSORT: protein localization predictor.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (July 2007)
    by P Horton, KJ Park, T Obayashi, N Fujita, H Harada, CJ Adams-Collier, K Nakai
    posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:09:32 as **
  • PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization.
    Trends Biochem Sci, Vol. 24, No. 1. (January 1999), pp. 34-36.
    by K Nakai, P Horton
    posted to basis bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:07:57 as **
  • MITOPRED: a web server for the prediction of mitochondrial proteins.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by C Guda, P Guda, E Fahy, S Subramaniam
    posted to bioinformatics human methodspaper mitochondria prediction yeast by raiyar on 2008-02-22 10:03:41 as **
  • Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes
    Genome Biology, Vol. 8, No. 12. (2007)
    by Kriston Mcgary, Insuk Lee, Edward Marcotte
    posted to bioinformatics complex_trait disease genomics methodspaper model mutant network prediction yeast by raiyar on 2008-02-18 11:01:55 as *** along with 5 people jiny cjeans biomcgary barriot entropy
  • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome.
    Genome Biol, Vol. 6, No. 5. (2005)
    by AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
    posted to bioinformatics human interaction methodspaper network prediction textmining by raiyar on 2008-01-28 13:58:50 as **** along with 18 people and 4 groups ggallone yaredo setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss grahamc Jarman Lab kdl Bioinformatics generif_paper
  • SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data.
    Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1410-1417.
    by H Shatkay, A Höglund, S Brady, T Blum, P Dönnes, O Kohlbacher
    posted to bioinformatics integration localization methodspaper prediction textmining by raiyar on 2008-01-07 22:20:45 as **** along with 2 people ptrobajo mdstobbe
  • Reverse engineering of regulatory networks in human B cells.
    Nat Genet (20 March 2005)
    by Katia Basso, Adam A A Margolin, Gustavo Stolovitzky, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano
    posted to human interaction network prediction regulation by raiyar on 2007-12-19 21:17:46 as *** along with 8 people snuppepuppan kentsis dragonrez jfr wnpx naegele heliopais lylu
  • Detecting multiple associations in genome-wide studies.
    Hum Genomics, Vol. 2, No. 5. (March 2006), pp. 310-317.
    by F Dudbridge, A Gusnanto, BP Koeleman
    posted to complex_trait disease genomics methodspaper prediction review by raiyar on 2007-12-19 21:11:37 as ****
  • Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes.
    Am J Hum Genet, Vol. 78, No. 6. (June 2006), pp. 1011-1025.
    by L Franke, H Bakel, L Fokkens, ED de Jong, M Egmont-Petersen, C Wijmenga
    posted to bioinformatics disease genomics human interaction methodspaper network parts-list prediction by raiyar on 2007-11-16 13:04:02 as read along with 7 people and 1 group jfr snuppepuppan jyuh lfriedl tabu samal mmt kdl
  • Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling.
    Genome Res, Vol. 17, No. 4. (April 2007), pp. 510-519.
    by JG Bundy, B Papp, R Harmston, RA Browne, EM Clayson, N Burton, RJ Reece, SG Oliver, KM Brindle
    posted to bioinformatics deletion metabolic_profiling methodspaper model network prediction technique yeast by raiyar on 2007-06-08 09:33:01 as ***** along with 2 people and 1 group fishtank alexg steinmetzlab
  • Systems biology, metabolic modelling and metabolomics in drug discovery and development
    Drug Discovery Today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092.
    by Douglas B Kell
    posted to genomics metabolic metabolic_profiling methodspaper model network prediction review systems by raiyar on 2007-05-02 12:44:16 as ** along with 10 people and 2 groups egonw irenas nicklynch alexg dullhunk mhucka fishtank shikin alanrw gemmalholliday steinmetzlab GeneGo
  • Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data
    Theoretical Biology and Medical Modelling, Vol. 3 (15 December 2006), 42.
    by Wolfram Liebermeister, Edda Klipp
    posted to bioinformatics flux metabolic methodspaper model network prediction statistics systems technique by raiyar on 2007-04-23 16:54:29 as **** along with 5 people and 1 group lflorez jyuh wnpx fishtank jrbanga steinmetzlab
  • Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.
    Brief Bioinform (14 November 2006)
    by Natal A W A van Riel
    posted to bioinformatics metabolic model network prediction review systems technique by raiyar on 2007-04-23 15:48:44 as **** along with 2 people and 1 group wnpx fishtank steinmetzlab
  • Computational approaches for the prediction of protein function in the mitochondrion.
    Am J Physiol Cell Physiol, Vol. 291, No. 6. (December 2006)
    by T Gabaldón
    posted to methodspaper mitochondria prediction by raiyar on 2007-01-22 13:03:30 as *** along with 1 group steinmetzlab
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