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di raiyar network [43 articles]

Articoli aggiunti di recente alla biblioteca di raiyar classificati sotto il tag network. You can also see everyone's network.
  • Identifying transcription factor functions and targets by phenotypic activation.
    Proc Natl Acad Sci U S A, Vol. 103, No. 32. (8 August 2006), pp. 12045-12050.
    by G Chua, QD Morris, R Sopko, MD Robinson, O Ryan, ET Chan, BJ Frey, BJ Andrews, C Boone, TR Hughes
    posted to yeast transcription tf regulation network motif expression by raiyar on 2008-11-06 10:41:59 as ** along with 3 people and 1 group indigoviolet koller hplatero EisenLab
  • Structure and function of a transcriptional network activated by the MAPK Hog1.
    Nature genetics (19 October 2008)
    by Andrew P P Capaldi, Tommy Kaplan, Ying Liu, Naomi Habib, Aviv Regev, Nir Friedman, Erin K K O'Shea
    posted to yeast regulation projmt network model example analysis by raiyar on 2008-11-03 16:54:00 as read along with 2 people renatomilani tmmurali
  • Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria.
    Cell, Vol. 115, No. 5. (26 November 2003), pp. 629-640.
    by VK Mootha, J Bunkenborg, JV Olsen, M Hjerrild, JR Wisniewski, E Stahl, MS Bolouri, HN Ray, S Sihag, M Kamal, N Patterson, ES Lander, M Mann
    posted to regulation proteomics network mouse mitochondria methodspaper integration expression disease by raiyar on 2008-10-01 13:09:33 as **
  • Evolutionary rate in the protein interaction network.
    Science, Vol. 296, No. 5568. (26 April 2002), pp. 750-752.
    by HB Fraser, AE Hirsh, LM Steinmetz, C Scharfe, MW Feldman
    posted to yeast proteomics network interaction ht evolution by raiyar on 2008-09-05 13:35:21 as ** along with 6 people marcio dragonrez bjorns timflutre tale friendpine
  • Capturing cellular machines by systematic screens of protein complexes.
    Trends Microbiol, Vol. 14, No. 8. (August 2006), pp. 336-339.
    by J Gagneur, L David, LM Steinmetz
    posted to yeast proteomics network interaction integration ht analysis by raiyar on 2008-09-05 13:33:03 as ** along with 1 person nm
  • Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function.
    Genome biology, Vol. 9 Suppl 1 (2008)
    by W Tian, LV Zhang, M Taşan, FD Gibbons, OD King, J Park, Z Wunderlich, JM Cherry, FP Roth
    posted to ym2008 yeast tool prediction network methodspaper integration genomics by raiyar on 2008-09-05 13:04:56 as ****
  • Drug Target Identification Using Side-Effect Similarity
    Science, Vol. 321, No. 5886. (11 July 2008), pp. 263-266.
    by Monica Campillos, Michael Kuhn, Anne-Claude Gavin, Lars J Jensen, Peer Bork
    posted to analysis chemgen compound example genomics ht interaction network prediction target by raiyar on 2008-08-11 16:21:27 as ***** along with 11 people jfr zimbo1 bpcusack jmuhlich aheilbut larsjuhljensen tmmurali askrajiv reyez roys ajaymalik
  • Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions
    Nature Genetics, Vol. 39, No. 2. (07 January 2007), pp. 199-206.
    by Robert P St Onge, Ramamurthy Mani, Julia Oh, Michael Proctor, Eula Fung, Ronald W Davis, Corey Nislow, Frederick P Roth, Guri Giaever
    posted to analysis chemgen deletion genomics haploinsufficiency ht network pathway systems yeast by raiyar on 2008-08-11 16:05:28 as ***** along with 5 people aalibes tmmurali wnpx Ao_Li2007 gwcarter
  • Moving toward a system genetics view of disease.
    Mamm Genome (26 July 2007)
    by Solveig K Sieberts, Eric E Schadt
    posted to expression genetic network qtl review statistics systems by raiyar on 2008-06-23 15:14:34 as ** along with 4 people and 2 groups jyuh dchughes jo_davies lp2 G4ID Genetics-of-Gambling
  • Walking the Interactome for Prioritization of Candidate Disease Genes
    The American Journal of Human Genetics, Vol. In Press, Corrected Proof
    by Sebastian Kohler, Sebastian Bauer, Denise Horn, Peter N Robinson
    posted to disease genetic interaction methodspaper network prediction by raiyar on 2008-06-23 15:12:21 as ** along with 4 people jfr kluck daed jyuh
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to disease ellstalk methodspaper network prediction proteomics by raiyar on 2008-06-19 15:46:55 as *** along with 21 people kaarsinogen giovenko jyuh balicea tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo zwang
  • Global Mapping of the Yeast Genetic Interaction Network
    Science, Vol. 303, No. 5659. (06 February 2004), pp. 808-813.
    by Amy HY Tong, Guillaume Lesage, Gary D Bader, Huiming Ding, Hong Xu, Xiaofeng Xin, James Young, Gabriel F Berriz, Renee L Brost, Michael Chang, Yiqun Chen, Xin Cheng, Gordon Chua, Helena Friesen, Debra S Goldberg, Jennifer Haynes, Christine Humphries, Grace He, Shamiza Hussein, Lizhu Ke, Nevan Krogan, Zhijian Li, Joshua N Levinson, Hong Lu, Patrice Menard, Christella Munyana, Ainslie B Parsons, Owen Ryan, Raffi Tonikian, Tania Roberts, Anne-Marie Sdicu, Jesse Shapiro, Bilal Sheikh, Bernhard Suter, Sharyl L Wong, Lan V Zhang, Hongwei Zhu, Christopher G Burd, Sean Munro, Chris Sander, Jasper Rine, Jack Greenblatt, Matthias Peter, Anthony Bretscher, Graham Bell, Frederick P Roth, Grant W Brown, Brenda Andrews, Howard Bussey, Charles Boone
    posted to basis deletion genetic genomics interaction methodspaper network yeast by raiyar on 2008-04-21 22:13:09 as ** along with 20 people and 2 groups czeller ldfu pcahan1 lfriedl lyongu luispedro opheliav tabu Chue nirfriedman nickluscombe koller patrycjam patrycja_missiuro jiny chasmand tresch Takayuki ksiek carlk kdl EBI-regulation
  • Guilt by association: contextual information in genome analysis.
    Genome Res, Vol. 10, No. 8. (August 2000), pp. 1074-1077.
    by L Aravind
    posted to genomics interaction methodspaper network by raiyar on 2008-04-21 22:04:14 as ** along with 3 people and 1 group ujh lfriedl bluto kdl
  • Variations in DNA elucidate molecular networks that cause disease
    Nature (16 March 2008)
    by Yanqing Chen, Jun Zhu, Pek Y Lum, Xia Yang, Shirly Pinto, Douglas J Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K Sieberts, Amy Leonardson, Lawrence W Castellini, Susanna Wang, Marie-France Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A Drake, Aldons J Lusis, Eric E Schadt
    posted to disease expression genetic human methodspaper model network qtl systems by raiyar on 2008-04-15 13:10:34 as read along with 16 people and 2 groups nicklynch semrich brianb jbsaltz djkt lp2 jo_davies shikin caseybrown ptrobajo jyuh echinotrix natstreet sanchezbuelna jfr chrisamiller 4th_floor_JC GeneGo
  • A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell
    Cell, Vol. 131, No. 7. (28 December 2007), pp. 1354-1365.
    by Richard Bonneau, Marc T Facciotti, David J Reiss, Amy K Schmid, Min Pan, Amardeep Kaur, Vesteinn Thorsson, Paul Shannon, Michael H Johnson, Christopher J Bare, William Longabaugh, Madhavi Vuthoori, Kenia Whitehead, Aviv Madar, Lena Suzuki, Tetsuya Mori, Dong-Eun Chang, Jocelyne Diruggiero, Carl H Johnson, Leroy Hood, Nitin S Baliga
    posted to methodspaper model network prediction by raiyar on 2008-04-11 17:03:14 as ** along with 8 people edwardmorrissey jyuh tmmurali oelemento emptyhb megraw roys Borelli
  • Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes
    Genome Biology, Vol. 8, No. 12. (2007)
    by Kriston Mcgary, Insuk Lee, Edward Marcotte
    posted to bioinformatics complex_trait disease genomics methodspaper model mutant network prediction yeast by raiyar on 2008-02-18 11:01:55 as *** along with 5 people jiny cjeans biomcgary barriot entropy
  • Gene Network Inference via Structural Equation Modeling in Genetical Genomics Experiments.
    Genetics (3 February 2008)
    by Bing Liu, Alberto de la Fuente, Ina Hoeschele
    posted to bioinformatics expression model network qtl regulation statistics yeast by raiyar on 2008-02-06 11:39:14 as *** along with 6 people and 1 group orzenil dpollard xingxu caseybrown smgomez jyuh EisenLab
  • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome.
    Genome Biol, Vol. 6, No. 5. (2005)
    by AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
    posted to bioinformatics human interaction methodspaper network prediction textmining by raiyar on 2008-01-28 13:58:50 as **** along with 18 people and 4 groups ggallone yaredo setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss grahamc Jarman Lab kdl Bioinformatics generif_paper
  • An improved map of conserved regulatory sites for Saccharomyces cerevisiae.
    BMC Bioinformatics, Vol. 7, No. 1. (7 March 2006)
    by Kenzie D Macisaac, Ting Wang, Benjamin D Gordon, David K Gifford, Gary D Stormo, Ernest Fraenkel
    posted to analysis bioinformatics network regulation sgtcnih yeast by raiyar on 2008-01-16 19:19:26 as *** along with 7 people tuck eckart_bindewald cconboy lusk nklee barwil kristallreiner
  • Reverse engineering of regulatory networks in human B cells.
    Nat Genet (20 March 2005)
    by Katia Basso, Adam A A Margolin, Gustavo Stolovitzky, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano
    posted to human interaction network prediction regulation by raiyar on 2007-12-19 21:17:46 as *** along with 8 people snuppepuppan kentsis dragonrez jfr wnpx naegele heliopais lylu
  • Gaining confidence in high-throughput protein interaction networks.
    Nat Biotechnol, Vol. 22, No. 1. (January 2004), pp. 78-85.
    by JS Bader, A Chaudhuri, JM Rothberg, J Chant
    posted to ht interaction methodspaper network proteomics by raiyar on 2007-12-19 21:13:44 as **** along with 9 people and 1 group dragonrez lfriedl gurkanbebek cjeans iris_2001 patrycjam patrycja_missiuro Evangelia ellakat kdl
  • Disease gene discovery through integrative genomics.
    Annu Rev Genomics Hum Genet, Vol. 6 (2005), pp. 381-406.
    by C Giallourakis, C Henson, M Reich, X Xie, VK Mootha
    posted to complex_trait disease genetic genomics integration mendelian methodspaper network by raiyar on 2007-11-16 13:10:04 as ***** along with 1 person jo_davies
  • Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes.
    Am J Hum Genet, Vol. 78, No. 6. (June 2006), pp. 1011-1025.
    by L Franke, H Bakel, L Fokkens, ED de Jong, M Egmont-Petersen, C Wijmenga
    posted to bioinformatics disease genomics human interaction methodspaper network parts-list prediction by raiyar on 2007-11-16 13:04:02 as read along with 7 people and 1 group jfr snuppepuppan jyuh lfriedl tabu samal mmt kdl
  • Genetical genomics analysis of a yeast segregant population for transcription network inference.
    Genetics, Vol. 170, No. 2. (June 2005), pp. 533-542.
    by N Bing, I Hoeschele
    posted to expression network qtl regulation tacqa yeast by raiyar on 2007-08-14 21:36:24 as *** along with 2 people and 1 group natstreet caseybrown steinmetzlab
  • Network analysis of FDA approved drugs and their targets.
    Mt Sinai J Med, Vol. 74, No. 1. (April 2007), pp. 27-32.
    by A Ma'ayan, SL Jenkins, J Goldfarb, R Iyengar
    posted to analysis bioinformatics compound network by raiyar on 2007-06-27 07:18:07 as ** along with 1 person and 1 group jyuh steinmetzlab
  • Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling.
    Genome Res, Vol. 17, No. 4. (April 2007), pp. 510-519.
    by JG Bundy, B Papp, R Harmston, RA Browne, EM Clayson, N Burton, RJ Reece, SG Oliver, KM Brindle
    posted to bioinformatics deletion metabolic_profiling methodspaper model network prediction technique yeast by raiyar on 2007-06-08 09:33:01 as ***** along with 2 people and 1 group fishtank alexg steinmetzlab
  • The human disease network
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690.
    by Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-Laszlo Barabasi
    posted to analysis bioinformatics disease genomics integration methodspaper network statistics systems by raiyar on 2007-05-27 00:38:43 as read along with 24 people and 8 groups Yanno jyuh aalibes cannin kuhn jfr yas balicea neveaire bundschu grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele shoshin shikin nolodie mingzhi carlk yaredo Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab ic4 generif_paper GomezLab
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
    by T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, R Bumgarner, DR Goodlett, R Aebersold, L Hood
    posted to analysis array bioinformatics deletion expression genomics integration methodspaper model network proteomics systems yeast by raiyar on 2007-05-26 18:25:14 as ***** along with 11 people and 3 groups isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek thomaskelder shikin Bioinformatics steinmetzlab GeneGo
  • Systems biology, metabolic modelling and metabolomics in drug discovery and development
    Drug Discovery Today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092.
    by Douglas B Kell
    posted to genomics metabolic metabolic_profiling methodspaper model network prediction review systems by raiyar on 2007-05-02 12:44:16 as ** along with 10 people and 2 groups egonw irenas nicklynch alexg dullhunk mhucka fishtank shikin alanrw gemmalholliday steinmetzlab GeneGo
  • Evidence for the presence of disease-perturbed networks in prostate cancer cells by genomic and proteomic analyses: a systems approach to disease.
    Cancer Res, Vol. 65, No. 8. (15 April 2005), pp. 3081-3091.
    by B Lin, JT White, W Lu, T Xie, AG Utleg, X Yan, EC Yi, P Shannon, I Khrebtukova, PH Lange, DR Goodlett, D Zhou, TJ Vasicek, L Hood
    posted to analysis disease ellstalk example genomics ht methodspaper network systems by raiyar on 2007-04-29 11:20:26 as ** along with 1 person and 1 group megraw steinmetzlab
  • Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations
    Science, Vol. 316, No. 5824. (27 April 2007), pp. 593-597.
    by Nobuyoshi Ishii, Kenji Nakahigashi, Tomoya Baba, Martin Robert, Tomoyoshi Soga, Akio Kanai, Takashi Hirasawa, Miki Naba, Kenta Hirai, Aminul Hoque, Pei Y Ho, Yuji Kakazu, Kaori Sugawara, Saori Igarashi, Satoshi Harada, Takeshi Masuda, Naoyuki Sugiyama, Takashi Togashi, Miki Hasegawa, Yuki Takai, Katsuyuki Yugi, Kazuharu Arakawa, Nayuta Iwata, Yoshihiro Toya, Yoichi Nakayama, Takaaki Nishioka, Kazuyuki Shimizu, Hirotada Mori, Masaru Tomita
    posted to defect flux ht metabolic_profiling mutant network systems by raiyar on 2007-04-27 13:34:19 as **** along with 4 people and 1 group jjray dylan77 ytoya IgorG steinmetzlab
  • Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 514-515.
    by Henning Schmidt, Mats Jirstrand
    posted to bioinformatics model network systems technique by raiyar on 2007-04-26 09:40:20 as ** along with 2 people and 2 groups julius jrbanga SysbioMPI-TCells steinmetzlab
  • Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data
    Theoretical Biology and Medical Modelling, Vol. 3 (15 December 2006), 42.
    by Wolfram Liebermeister, Edda Klipp
    posted to bioinformatics flux metabolic methodspaper model network prediction statistics systems technique by raiyar on 2007-04-23 16:54:29 as **** along with 5 people and 1 group lflorez jyuh wnpx fishtank jrbanga steinmetzlab
  • Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.
    Brief Bioinform (14 November 2006)
    by Natal A W A van Riel
    posted to bioinformatics metabolic model network prediction review systems technique by raiyar on 2007-04-23 15:48:44 as **** along with 2 people and 1 group wnpx fishtank steinmetzlab
  • Multiple knockout analysis of genetic robustness in the yeast metabolic network
    Nature Genetics, Vol. 38, No. 9. (29 August 2006), pp. 993-998.
    by David Deutscher, Isaac Meilijson, Martin Kupiec, Eytan Ruppin
    posted to metabolic model mutant network yeast by raiyar on 2007-04-03 16:35:12 as ***** along with 7 people and 1 group tmmurali koller cjeans patrycja_missiuro edwardmorrissey hryk jiny steinmetzlab
  • Uncovering transcriptional regulation of metabolism by using metabolic network topology.
    Proc Natl Acad Sci U S A, Vol. 102, No. 8. (22 February 2005), pp. 2685-2689.
    by KR Patil, J Nielsen
    posted to bioinformatics metabolic model network regulation transcription by raiyar on 2007-03-22 12:52:55 as *** along with 1 person and 1 group alexg steinmetzlab
  • Systems analysis of energy metabolism elucidates the affected respiratory chain complex in Leigh's syndrome
    Molecular Genetics and Metabolism, Vol. 91, No. 1. (May 2007), pp. 15-22.
    by Thuy D Vo, Paul, Bernhard O Palsson
    posted to bioinformatics disease metabolic methodspaper model network systems by raiyar on 2007-03-21 12:53:19 as read along with 1 group steinmetzlab
  • Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions.
    BMC Bioinformatics, Vol. 1 (2000)
    by JS Edwards, BO Palsson
    posted to parts-list network mutant model genes flux deletion bioinformatics analysis by raiyar on 2007-01-25 11:29:42 as ***** along with 1 person and 2 groups icases steinmetzlab TNT
  • Integrating high-throughput and computational data elucidates bacterial networks.
    Nature, Vol. 429, No. 6987. (6 May 2004), pp. 92-96.
    by MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson
    posted to ht model network regulation sgtcnih systems by raiyar on 2007-01-25 10:42:56 as ***** along with 6 people and 2 groups Retchless lfriedl RMGraze alexg JeremyZucker srp33 kdl steinmetzlab
  • Metabolic modeling of microbial strains in silico.
    Trends Biochem Sci, Vol. 26, No. 3. (March 2001), pp. 179-186.
    by MW Covert, CH Schilling, I Famili, JS Edwards, II Goryanin, E Selkov, BO Palsson
    posted to systems review network model metabolic integration flux bioinformatics by raiyar on 2007-01-24 17:05:10 as ***** along with 1 person and 2 groups icases steinmetzlab TNT
  • Candidate metabolic network states in human mitochondria. Impact of diabetes, ischemia, and diet.
    J Biol Chem, Vol. 280, No. 12. (25 March 2005), pp. 11683-11695.
    by I Thiele, ND Price, TD Vo, BØ Palsson
    posted to network model mitochondria metabolic human flux disease by raiyar on 2007-01-24 17:00:01 as ***** along with 1 group steinmetzlab
  • Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae.
    Genome Res, Vol. 16, No. 5. (May 2006), pp. 627-635.
    by MJ Herrgård, BS Lee, V Portnoy, BØ Palsson
    posted to metabolic methodspaper model network regulation sgtcnih transcription yeast by raiyar on 2007-01-08 15:19:42 as *** along with 7 people and 3 groups JeremyZucker nickluscombe aswin kengg koller cjeans edwardmorrissey EBI-regulation steinmetzlab Plantandetc
  • Assessing Systems Properties of Yeast Mitochondria through an Interaction Map of the Organelle
    PLoS Genetics, Vol. 2, No. 10. (20 October 2006), e170.
    by Fabiana Perocchi, Lars J Jensen, Julien Gagneur, Uwe Ahting, Christian von Mering, Peer Bork, Holger Prokisch, Lars M Steinmetz
    edited by Stuart K Kim
    posted to yeast tac2 systems sgtcnih parts-list network mitochondria methodspaper interaction integration human genes disease by raiyar on 2006-12-28 02:04:28 as read along with 1 group steinmetzlab
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