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di raiyar genomics [60 articles]

Articoli aggiunti di recente alla biblioteca di raiyar classificati sotto il tag genomics. You can also see everyone's genomics.
  • Functional discovery via a compendium of expression profiles.
    Cell, Vol. 102, No. 1. (7 July 2000), pp. 109-126.
    by TR Hughes, MJ Marton, AR Jones, CJ Roberts, R Stoughton, CD Armour, HA Bennett, E Coffey, H Dai, YD He, MJ Kidd, AM King, MR Meyer, D Slade, PY Lum, SB Stepaniants, DD Shoemaker, D Gachotte, K Chakraburtty, J Simon, M Bard, SH Friend
  • Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools
    Genome Biology, Vol. 9, No. 10. (2008)
    by Mirana Ramialison, Baubak Bajoghli, Narges Aghaallaei, Laurence Ettwiller, Sylvain Gaudan, Beate Wittbrodt, Thomas Czerny, Joachim Wittbrodt
    posted to textmining regulation interest genomics bioinformatics by raiyar on 2008-10-02 13:29:18 as **
  • The genome sequence of Rickettsia prowazekii and the origin of mitochondria.
    Nature, Vol. 396, No. 6707. (12 November 1998), pp. 133-140.
  • Integrating protein-protein interactions and text mining for protein function prediction
    BMC Bioinformatics, Vol. 9, No. Suppl 8. (2008)
    by Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich R Schuhmann
  • Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function.
    Genome biology, Vol. 9 Suppl 1 (2008)
    by W Tian, LV Zhang, M Taşan, FD Gibbons, OD King, J Park, Z Wunderlich, JM Cherry, FP Roth
    posted to ym2008 yeast tool prediction network methodspaper integration genomics by raiyar on 2008-09-05 13:04:56 as ****
  • Yeast as a model for human disease.
    Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.], Vol. Chapter 15 (February 2006)
    by MG Smith, M Snyder
    posted to yeast review model methodspaper genomics disease by raiyar on 2008-09-05 12:57:50 as **
  • A unique and universal molecular barcode array
    Nature Methods, Vol. 3, No. 8. (21 July 2006), pp. 601-603.
    by Sarah E Pierce, Eula L Fung, Daniel F Jaramillo, Angela M Chu, Ronald W Davis, Corey Nislow, Guri Giaever
  • Drug Target Identification Using Side-Effect Similarity
    Science, Vol. 321, No. 5886. (11 July 2008), pp. 263-266.
    by Monica Campillos, Michael Kuhn, Anne-Claude Gavin, Lars J Jensen, Peer Bork
  • Linking functionally related genes by sensitive and quantitative characterization of genetic interaction profiles
    Proceedings of the National Academy of Sciences, Vol. 105, No. 15. (15 April 2008), pp. 5821-5826.
    by Laurence Decourty, Cosmin Saveanu, Kenza Zemam, Florence Hantraye, Emmanuel Frachon, Jean-Claude Rousselle, Micheline Fromont-Racine, Alain Jacquier
  • The mitochondrial proteome: from inventory to function.
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 22-24.
  • Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.
    Nat Methods (11 June 2007)
    by Gordon Robertson, Martin Hirst, Matthew Bainbridge, Misha Bilenky, Yongjun Zhao, Thomas Zeng, Ghia Euskirchen, Bridget Bernier, Richard Varhol, Allen Delaney, Nina Thiessen, Obi L L Griffith, Ann He, Marco Marra, Michael Snyder, Steven Jones
  • An integrated platform of genomic assays reveals small-molecule bioactivities
    Nat Chem Biol, Vol. 4, No. 8. (2008), pp. 498-506.
    by Shawn Hoon, Smith, Iain M Wallace, Sundari Suresh, Molly Miranda, Eula Fung, Michael Proctor, Kevan M Shokat, Chao Zhang, Ronald W Davis, Guri Giaever, Robert P St Onge, Corey Nislow
  • Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions
    Nature Genetics, Vol. 39, No. 2. (07 January 2007), pp. 199-206.
    by Robert P St Onge, Ramamurthy Mani, Julia Oh, Michael Proctor, Eula Fung, Ronald W Davis, Corey Nislow, Frederick P Roth, Guri Giaever
  • The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes
    Science, Vol. 320, No. 5874. (18 April 2008), pp. 362-365.
    by Maureen E Hillenmeyer, Eula Fung, Jan Wildenhain, Sarah E Pierce, Shawn Hoon, William Lee, Michael Proctor, St, Mike Tyers, Daphne Koller, Russ B Altman, Ronald W Davis, Corey Nislow, Guri Giaever
  • Calling cards for DNA-binding proteins.
    Genome Res (10 July 2007)
    by Haoyi Wang, Mark Johnston, Robi David D Mitra
  • A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 112-123.
    by David J Pagliarini, Sarah E Calvo, Betty Chang, Sunil A Sheth, Scott B Vafai, Shao-En Ong, Geoffrey A Walford, Canny Sugiana, Avihu Boneh, William K Chen, David E Hill, Marc Vidal, James G Evans, David R Thorburn, Steven A Carr, Vamsi K Mootha
  • Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi.
    Nature, Vol. 414, No. 6862. (22 November 2001), pp. 450-453.
  • Global Mapping of the Yeast Genetic Interaction Network
    Science, Vol. 303, No. 5659. (06 February 2004), pp. 808-813.
    by Amy HY Tong, Guillaume Lesage, Gary D Bader, Huiming Ding, Hong Xu, Xiaofeng Xin, James Young, Gabriel F Berriz, Renee L Brost, Michael Chang, Yiqun Chen, Xin Cheng, Gordon Chua, Helena Friesen, Debra S Goldberg, Jennifer Haynes, Christine Humphries, Grace He, Shamiza Hussein, Lizhu Ke, Nevan Krogan, Zhijian Li, Joshua N Levinson, Hong Lu, Patrice Menard, Christella Munyana, Ainslie B Parsons, Owen Ryan, Raffi Tonikian, Tania Roberts, Anne-Marie Sdicu, Jesse Shapiro, Bilal Sheikh, Bernhard Suter, Sharyl L Wong, Lan V Zhang, Hongwei Zhu, Christopher G Burd, Sean Munro, Chris Sander, Jasper Rine, Jack Greenblatt, Matthias Peter, Anthony Bretscher, Graham Bell, Frederick P Roth, Grant W Brown, Brenda Andrews, Howard Bussey, Charles Boone
  • Guilt by association: contextual information in genome analysis.
    Genome Res, Vol. 10, No. 8. (August 2000), pp. 1074-1077.
    by L Aravind
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
  • KEGG for linking genomes to life and the environment
    Nucl. Acids Res. (12 December 2007), gkm882.
    by Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi
  • Structure and evolution of organelle genomes.
    Microbiol Rev, Vol. 46, No. 2. (June 1982), pp. 208-240.
    by DC Wallace
    posted to basis evolution genomics mitochondria mtdna review by raiyar on 2008-03-24 16:19:25 as **
  • Global analysis of protein localization in budding yeast.
    Nature, Vol. 425, No. 6959. (16 October 2003), pp. 686-691.
    by WK Huh, JV Falvo, LC Gerke, AS Carroll, RW Howson, JS Weissman, EK O'Shea
  • The road to genome-wide association studies
    Nature Reviews Genetics, Vol. 9 (19 February 2008), pp. 314-318.
    by Leonid Kruglyak
    posted to complex_trait disease genomics human methodspaper qtl review variant by raiyar on 2008-02-21 08:23:45 as ***
  • Global organellar proteomics
    Trends in Biotechnology, Vol. 21, No. 2. (February 2003), pp. 82-88.
    by Steven W Taylor, Eoin Fahy, Soumitra S Ghosh
  • Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes
    Genome Biology, Vol. 8, No. 12. (2007)
    by Kriston Mcgary, Insuk Lee, Edward Marcotte
  • POCUS: mining genomic sequence annotation to predict disease genes
    Genome Biology, Vol. 4, No. 11. (2003)
    by Frances Turner, Daniel Clutterbuck, Colin Semple
  • Detecting multiple associations in genome-wide studies.
    Hum Genomics, Vol. 2, No. 5. (March 2006), pp. 310-317.
    posted to complex_trait disease genomics methodspaper prediction review by raiyar on 2007-12-19 21:11:37 as ****
  • mTOR controls mitochondrial oxidative function through a YY1-PGC-1[agr] transcriptional complex
    Nature, Vol. 450, No. 7170. (29 November 2007), pp. 736-740.
    by John T Cunningham, Joseph T Rodgers, Daniel H Arlow, Francisca Vazquez, Vamsi K Mootha, Pere Puigserver
    posted to genetic genomics human mitochondria mutant by raiyar on 2007-12-03 13:58:32 as ** along with 1 person giovanni
  • Disease gene discovery through integrative genomics.
    Annu Rev Genomics Hum Genet, Vol. 6 (2005), pp. 381-406.
    by C Giallourakis, C Henson, M Reich, X Xie, VK Mootha
  • Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes.
    Am J Hum Genet, Vol. 78, No. 6. (June 2006), pp. 1011-1025.
  • Maximizing the potential of functional genomics.
    Nat Rev Genet, Vol. 5, No. 3. (March 2004), pp. 190-201.
    by LM Steinmetz, RW Davis
  • Genomic expression programs in the response of yeast cells to environmental changes.
    Mol Biol Cell, Vol. 11, No. 12. (December 2000), pp. 4241-4257.
    by AP Gasch, PT Spellman, CM Kao, O Carmel-Harel, MB Eisen, G Storz, D Botstein, PO Brown
  • Functional profiling of the Saccharomyces cerevisiae genome.
    Nature, Vol. 418, No. 6896. (25 July 2002), pp. 387-391.
  • Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
    PNAS, Vol. 104, No. 31. (31 July 2007), pp. 12825-12830.
    by Wu Wei, John H Mccusker, Richard W Hyman, Ted Jones, Ye Ning, Zhiwei Cao, Zhenglong Gu, Dan Bruno, Molly Miranda, Michelle Nguyen, Julie Wilhelmy, Caridad Komp, Raquel Tamse, Xiaojing Wang, Peilin Jia, Philippe Luedi, Peter J Oefner, Lior David, Fred S Dietrich, Yixue Li, Ronald W Davis, Lars M Steinmetz
  • The human disease network
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690.
    by Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-Laszlo Barabasi
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
  • High-throughput classification of yeast mutants for functional genomics using metabolic footprinting.
    Nat Biotechnol, Vol. 21, No. 6. (June 2003), pp. 692-696.
    by J Allen, HM Davey, D Broadhurst, JK Heald, JJ Rowland, SG Oliver, DB Kell
  • The Cinderella story of metabolic profiling: does metabolomics get to go to the functional genomics ball?
    Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1465. (29 January 2006), pp. 147-161.
    by JL Griffin
  • XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification.
    Anal Chem, Vol. 78, No. 3. (1 February 2006), pp. 779-787.
    by CA Smith, EJ Want, G O'Maille, R Abagyan, G Siuzdak
  • Systems biology, metabolic modelling and metabolomics in drug discovery and development
    Drug Discovery Today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092.
    by Douglas B Kell
  • Evidence for the presence of disease-perturbed networks in prostate cancer cells by genomic and proteomic analyses: a systems approach to disease.
    Cancer Res, Vol. 65, No. 8. (15 April 2005), pp. 3081-3091.
    by B Lin, JT White, W Lu, T Xie, AG Utleg, X Yan, EC Yi, P Shannon, I Khrebtukova, PH Lange, DR Goodlett, D Zhou, TJ Vasicek, L Hood
  • Towards multidimensional genome annotation
    Nature Reviews Genetics, Vol. 7, No. 2. (February 2006), pp. 130-141.
    by Jennifer L Reed, Iman Famili, Ines Thiele, Bernhard O Palsson
  • Global reconstruction of the human metabolic network based on genomic and bibliomic data.
    Proc Natl Acad Sci U S A (31 January 2007)
    by Natalie C C Duarte, Scott A A Becker, Neema Jamshidi, Ines Thiele, Monica L L Mo, Thuy D D Vo, Rohith Srivas, Bernhard O O Palsson
  • Functional organization of the yeast proteome by systematic analysis of protein complexes.
    Nature, Vol. 415, No. 6868. (10 January 2002), pp. 141-147.
  • Exploring the metabolic and genetic control of gene expression on a genomic scale.
    Science, Vol. 278, No. 5338. (24 October 1997), pp. 680-686.
    by JL DeRisi, VR Iyer, PO Brown
  • Hap4p overexpression in glucose-grown Saccharomyces cerevisiae induces cells to enter a novel metabolic state.
    Genome Biol, Vol. 4, No. 1. (2003)
    by R Lascaris, HJ Bussemaker, A Boorsma, M