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di operon library [1022 articles]

Articoli aggiunti di recente nella biblioteca di operon ordinata per importanza .
  • The path to productive partnerships
    Nature, Vol. 452, No. 7188. (10 April 2008), pp. 665-665.
    posted to social by operon on 2008-04-17 03:11:29 as ***** along with 4 people dullhunk hpiwowar yuhc applebyb
  • Multilocus sequence typing (MLST) of Mycoplasma hyopneumoniae: a diverse pathogen with limited clonality.
    Veterinary microbiology, Vol. 127, No. 1-2. (5 February 2008), pp. 63-72.
    by D Mayor, J Jores, BM Korczak, P Kuhnert
    posted to master mycoplasma reduction by operon on 2008-04-13 22:38:25 as *****
  • Darwinian Evolution on a Chip
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e85.
    by Brian M Paegel, Gerald F Joyce
    posted to evolution rna by operon on 2008-04-11 03:28:25 as ***** along with 12 people and 2 groups stevanspringer xingxu Minty renatomilani TomQ phoenixzxl melting dlobo cfleet fdsayre barry jonsta247 GEB Bioinformatics
  • The small genome of an abundant coastal ocean methylotroph.
    Environmental microbiology (3 April 2008)
    by Stephen J J Giovannoni, Darin H H Hayakawa, H James J Tripp, Ulrich Stingl, Scott A A Givan, Jang-Cheon C Cho, Hyun-Myung M Oh, Joshua B B Kitner, Kevin L L Vergin, Michael S S Rappé
    posted to genomics reduction by operon on 2008-04-10 03:17:31 as ***** along with 2 people and 2 groups vrich vaulot Microbial-Ecology Papers recommended by the Roscoff Plankton Group
  • The origin of mitochondria in light of a fluid prokaryotic chromosome model.
    Biology letters, Vol. 3, No. 2. (22 April 2007), pp. 180-184.
    by C Esser, W Martin, T Dagan
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  • When less is more: gene loss as an engine of evolutionary change.
    Am J Hum Genet, Vol. 64, No. 1. (January 1999), pp. 18-23.
    by MV Olson
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  • Comparative genomics of microbial pathogens and symbionts.
    Bioinformatics (Oxford, England), Vol. 18 Suppl 2 (2002)
    by SG Andersson, C Alsmark, B Canbäck, W Davids, C Frank, O Karlberg, L Klasson, B Antoine-Legault, A Mira, I Tamas
    posted to evolution master pathogenics reduction by operon on 2008-04-03 02:32:53 as ***** along with 1 person MarkMelioid
  • Proteomic survey of the pathogenic Mycoplasma hyopneumoniae strain 7448 and identification of novel post-translationally modified and antigenic proteins.
    Veterinary microbiology, Vol. 121, No. 1-2. (31 March 2007), pp. 83-93.
    by PM Pinto, G Chemale, LA de Castro, AP Costa, JD Kich, MH Vainstein, A Zaha, HB Ferreira
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  • Analysis of Promoter Targets for Escherichia coli Transcription Elongation Factor GreA In Vivo and In Vitro
    J. Bacteriol., Vol. 189, No. 24. (15 December 2007), pp. 8772-8785.
    by Ekaterina Stepanova, Jookyung Lee, Maria Ozerova, Ekaterina Semenova, Kirill Datsenko, Barry L Wanner, Konstantin Severinov, Sergei Borukhov
    posted to evolution genomics master mcite mycoplasma by operon on 2008-04-02 16:48:51 as ***** along with 1 person margaritis
  • Pathogens in decay
    Nat Rev Micro, Vol. 2, No. 10. (October 2004), pp. 774-775.
    by Ana Cerdeno-Tarraga, Nicholas Thomson, Julian Parkhill
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  • Stochastic switching as a survival strategy in fluctuating environments
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 471-475.
    by Murat Acar, Jerome T Mettetal, Alexander van Oudenaarden
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  • Protein stability imposes limits on organism complexity and speed of molecular evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 41. (9 October 2007), pp. 16152-16157.
    by Konstantin B Zeldovich, Peiqiu Chen, Eugene I Shakhnovich
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  • Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts
    Proceedings of the National Academy of Sciences, Vol. 99, No. 20. (1 October 2002), pp. 12944-12948.
    by Takeshi Itoh, William Martin, Masatoshi Nei
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  • Stability of mRNA/DNA and DNA/DNA duplexes affects mRNA transcription.
    PLoS ONE, Vol. 2, No. 3. (2007)
    by RI Kraeva, DB Krastev, A Roguev, A Ivanova, MN Nedelcheva-Veleva, SS Stoynov
    posted to biophysics master by operon on 2008-03-29 21:52:54 as *****
  • Synonymous Codon Bias Is Not Caused by Mutation Bias in G+C-Rich Genes in Humans
    Mol Biol Evol, Vol. 18, No. 6. (1 June 2001), pp. 982-986.
    by Nick G Smith, Adam Eyre-Walker
    posted to evolution master by operon on 2008-03-29 21:25:58 as *****
  • Intraspecific variation in symbiont genomes: bottlenecks and the aphid-buchnera association.
    Genetics, Vol. 157, No. 2. (February 2001), pp. 477-489.
    by DJ Funk, JJ Wernegreen, NA Moran
    posted to evolution genometrics master by operon on 2008-03-28 18:41:15 as ***** along with 1 person manzanita
  • Mutational Interference and the Progression of Muller's Ratchet When Mutations Have a Broad Range of Deleterious Effects
    Genetics, Vol. 177, No. 2. (1 October 2007), pp. 971-986.
    by Jonas R Soderberg, Otto G Berg
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  • The Roles of Mutation Accumulation and Selection in Loss of Sporulation in Experimental Populations of Bacillus subtilis
    Genetics, Vol. 177, No. 2. (1 October 2007), pp. 937-948.
    by Heather Maughan, Joanna Masel, William C Birky, Wayne L Nicholson
    posted to evolution master by operon on 2008-03-28 14:33:07 as *****
  • Should we expect substitution rate to depend on population size?
    Genetics, Vol. 150, No. 2. (October 1998), pp. 911-919.
    by JL Cherry
    posted to evolution master by operon on 2008-03-28 14:13:04 as ***** along with 1 person mdimmic
  • RATES OF MOLECULAR EVOLUTION: Phylogenetic Issues and Applications
    Annual Review of Ecology and Systematics, Vol. 27, No. 1. (1996), pp. 279-303.
    by David P Mindell, Christine E Thacker
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  • Accelerated evolution and Muller's rachet in endosymbiotic bacteria
    PNAS, Vol. 93, No. 7. (2 April 1996), pp. 2873-2878.
    by Nancy A Moran
    posted to master reduction by operon on 2008-03-28 03:41:42 as ***** along with 1 person and 2 groups mattjb ComplexAdaptiveSystems DSTO-CAS
  • Phylogenomic analysis of natural selection pressure in Streptococcus genomes
    BMC Evolutionary Biology, Vol. 7 (30 August 2007), 154.
    by Maria Anisimova, Joseph Bielawski, Katherine Dunn, Ziheng Yang
    posted to evolution master selection by operon on 2008-03-18 20:05:59 as *****
  • Microbial minimalism: genome reduction in bacterial pathogens.
    Cell, Vol. 108, No. 5. (8 March 2002), pp. 583-586.
    by NA Moran
    posted to evolution master reduction by operon on 2008-03-16 21:04:03 as *****
  • The roles of positive and negative selection in the molecular evolution of insect endosymbionts.
    Gene, Vol. 355 (1 August 2005), pp. 1-10.
    by AJ Fry, JJ Wernegreen
    posted to evolution master by operon on 2008-03-16 21:03:03 as *****
  • Purifying selection in mitochondria, free-living and obligate intracellular proteobacteria
    BMC Evolutionary Biology, Vol. 7 (12 February 2007), 17.
    by Leila Mamirova, Konstantin Popadin, Mikhail S Gelfand
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  • Genome evolution in cyanobacteria: The stable core and the variable shell
    Proceedings of the National Academy of Sciences, Vol. 105, No. 7. (19 February 2008), pp. 2510-2515.
    by Tuo Shi, Paul G Falkowski
    posted to evolution master by operon on 2008-03-16 20:36:30 as ***** along with 4 people and 2 groups bluto Thaverkamp vaulot tuoshi Microbial-Ecology Papers recommended by the Roscoff Plankton Group
  • Breathing Dynamics in Heteropolymer DNA
    Biophys. J., Vol. 92, No. 8. (15 April 2007), pp. 2674-2684.
    by Tobias Ambjornsson, Suman K Banik, Oleg Krichevsky, Ralf Metzler
    posted to biophysics master by operon on 2008-03-16 17:52:00 as *****
  • Evolution of mollicutes: down a bumpy road with twists and turns.
    Res Microbiol, Vol. 158, No. 10. (December 2007), pp. 754-766.
    by P Sirand-Pugnet, C Citti, A Barré, A Blanchard
    posted to evolution master mycoplasma reduction by operon on 2008-03-16 15:47:43 as *****
  • The K(A)/K(S) ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study.
    Genome Res, Vol. 12, No. 1. (January 2002), pp. 198-202.
    by A Nekrutenko, KD Makova, WH Li
    posted to evolution master selection by operon on 2008-03-16 14:43:38 as ***** along with 1 person Cortel
  • Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.
    PLoS Biol, Vol. 2, No. 3. (March 2004)
    by M Wu, LV Sun, J Vamathevan, M Riegler, R Deboy, JC Brownlie, EA McGraw, W Martin, C Esser, N Ahmadinejad, C Wiegand, R Madupu, MJ Beanan, LM Brinkac, SC Daugherty, AS Durkin, JF Kolonay, WC Nelson, Y Mohamoud, P Lee, K Berry, MB Young, T Utterback, J Weidman, WC Nierman, IT Paulsen, KE Nelson, H Tettelin, SL O'Neill, JA Eisen
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  • Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution.
    Proc Natl Acad Sci U S A, Vol. 104, No. 3. (16 January 2007), pp. 870-875.
    by T Dagan, W Martin
    posted to master reduction by operon on 2008-03-10 00:39:43 as *****
  • Are all horizontal gene transfers created equal? Prospects for mechanism-based studies of HGT patterns
    Microbiology, Vol. 154, No. 1. (1 January 2008), pp. 1-15.
    by Jesse R Zaneveld, Diana R Nemergut, Rob Knight
    posted to evolution horizontal_transfer master by operon on 2008-03-09 23:39:17 as *****
  • Biological applications of the theory of birth-and-death processes
    Brief Bioinform, Vol. 7, No. 1. (1 March 2006), pp. 70-85.
    by Artem S Novozhilov, Georgy P Karev, Eugene V Koonin
    posted to evolution master by operon on 2008-03-09 23:36:31 as ***** along with 2 people marcusfrean lp2
  • Extensive Proliferation of Transposable Elements in Heritable Bacterial Symbionts
    J. Bacteriol., Vol. 190, No. 2. (15 January 2008), pp. 777-779.
    by Gordon R Plague, Helen E Dunbar, Phat L Tran, Nancy A Moran
    posted to evolution master by operon on 2008-03-09 23:30:34 as *****
  • Loss of DNA Recombinational Repair Enzymes in the Initial Stages of Genome Degeneration
    Mol Biol Evol, Vol. 20, No. 8. (1 August 2003), pp. 1188-1194.
    by Colin Dale, Ben Wang, Nancy Moran, Howard Ochman
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  • The other side of the nearly neutral theory, evidence of slightly advantageous back-mutations
    Proceedings of the National Academy of Sciences, Vol. 104, No. 43. (23 October 2007), pp. 16992-16997.
    by Jane Charlesworth, Adam Eyre-Walker
    posted to evolution master phylogenetics by operon on 2008-02-21 13:57:57 as ***** along with 1 person bpcusack
  • Genome history in the symbiotic hybrid Euglena gracilis.
    Gene, Vol. 402, No. 1-2. (1 November 2007), pp. 35-39.
    by N Ahmadinejad, T Dagan, W Martin
    posted to genomics evolution master symbiosis by operon on 2008-02-04 13:55:17 as *****
  • DNA Double Helices Recognize Mutual Sequence Homology in a Protein Free Environment
    J. Phys. Chem. B, Vol. 112, No. 4. (31 January 2008), pp. 1060-1064.
    by GS Baldwin, NJ Brooks, RE Robson, A Wynveen, A Goldar, S Leikin, JM Seddon, AA Kornyshev
    posted to biophysics dna gene master rearrangements recombination by operon on 2008-02-02 19:06:38 as *****
  • Some bacteria degrade explosives, others prefer boiling methanol
    Environmental Microbiology, Vol. 9, No. 12. (December 2007), pp. 2905-2910.
    by Galperin, Y Michael
    posted to biodiversity biofuels biotechnology prokaryote by operon on 2008-01-27 16:40:38 as *****
  • Transcriptome Changes in Mycoplasma hyopneumoniae During Infection.
    Infect Immun (10 December 2007)
    by Melissa L L Madsen, Supraja Puttamreddy, Eileen L L Thacker, Michael D D Carruthers, F Chris C Minion
    posted to prokaryote genomics infection interaction microarray mycoplasma transcription transcriptome by operon on 2007-12-16 21:27:17 as *****
  • Modeling DNA-binding of Escherichia coli sigma70 exhibits a characteristic energy landscape around strong promoters
    Nucl. Acids Res. (16 October 2007), gkm720.
    by Johanna Weindl, Pavol Hanus, Zaher Dawy, Juergen Zech, Joachim Hagenauer, Jakob C Mueller
    posted to promoter structure bioinformatics genomics prokaryote protein by operon on 2007-10-21 17:46:07 as ***** along with 2 people and 1 group dpollard maximilianh EisenLab
  • Diversity-generating retroelements.
    Curr Opin Microbiol (17 August 2007)
    by Bob Medhekar, Jeff F F Miller
    posted to genomics evolution gene genetics phylogenetics transposon by operon on 2007-08-29 06:18:38 as *****
  • Adaptive Mutations in Bacteria: High Rate and Small Effects
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 813-815.
    by Lilia Perfeito, Lisete Fernandes, Catarina Mota, Isabel Gordo
    posted to prokaryote adaptation bioinformatics evolution genomics mutation phylogenetics by operon on 2007-08-20 02:57:59 as ***** along with 2 people and 1 group stevanspringer zwang FAB-lab
  • Phylogenetic Relationships Among Mycoplasmas Based on the Whole Genomic Information
    Journal of Molecular Evolution
    by Kenro Oshima, Hiromi Nishida
    posted to bioinformatics evolution firmicute genomics master mycoplasma phylogenetics by operon on 2007-08-14 13:43:32 as *****
  • DarkHorse: a method for genome-wide prediction of horizontal gene transfer
    Genome Biology, Vol. 8 (02 February 2007), R16.
    by Sheila Podell, Terry Gaasterland
    posted to genomics prokaryote bioinformatics evolution horizontal_transfer phylogenetics by operon on 2007-07-26 16:59:58 as ***** along with 2 people eweaver karfunkel
  • Phylogenetic Reconstruction of Orthology, Paralogy, and Conserved Synteny for Dog and Human
    PLoS Computational Biology, Vol. 2, No. 9. (1 September 2006), e133.
    by Leo Goodstadt, Chris P Ponting
    posted to eukaryotic evolution genomics ortholog paralog phylogenetics synteny by operon on 2007-07-23 21:11:47 as ***** along with 1 person and 1 group indigoviolet EisenLab
  • Assessing performance of orthology detection strategies applied to eukaryotic genomes.
    PLoS ONE, Vol. 2 (2007)
    by F Chen, AJ Mackey, JK Vermunt, DS Roos
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  • Benchmarking ortholog identification methods using functional genomics data.
    Genome Biol, Vol. 7, No. 4. (13 April 2006)
    by Tim Hulsen, Martijn A Huynen, Jacob de Vlieg, Peter M Groenen
    posted to evolution genomics ortholog phylogenetics by operon on 2007-07-23 20:27:59 as ***** along with 6 people and 1 group indigoviolet bluto bootsy alpae tmmurali cerca EisenLab
  • Improving the specificity of high-throughput ortholog prediction.
    BMC Bioinformatics, Vol. 7, No. 1. (28 May 2006)
    by Debra L Fulton, Yvonne Y Li, Matthew R Laird, Benjamin G Horsman, Fiona M Roche, Fiona S Brinkman
    posted to evolution genomics ortholog phylogenetics by operon on 2007-07-23 20:26:19 as ***** along with 4 people and 2 groups indigoviolet kaspermunch cerca rvosa Bioinformatics EisenLab
  • Orthology prediction at Scalable Resolution by Phylogenetic Tree analysis
    BMC Bioinformatics, Vol. 8 (08 March 2007), 83.
    by Rene TJM van der Heijden, Berend Snel, Vera van Noort, Martijn A Huynen
    posted to evolution genomics ortholog phylogenetics by operon on 2007-07-23 20:25:11 as ***** along with 1 person svdate
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