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di olympos library [154 articles]

Articoli aggiunti di recente nella biblioteca di olympos .
  • Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 720-731.
    by Nathan D Trinklein, Ulas Karaoz, Jiaqian Wu, Anason Halees, Force, Patrick J Collins, Deyou Zheng, Zhengdong D Zhang, Mark B Gerstein, Michael Snyder, Richard M Myers, Zhiping Weng
    posted to tez by olympos on 2007-11-26 22:28:32 as ** along with 4 people jyuh djkt cjeans Garamonfok
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    by E Encode
    posted to tez by olympos on 2007-11-26 04:50:28 as ** along with 9 people and 2 groups jyuh jfr chad_davis kengg blobbybirdman shikin fpattyn yevishere elfar Bioinformatics UH - Computational Biology
  • Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome.
    Genome Res, Vol. 16, No. 1. (January 2006), pp. 1-10.
    by SJ Cooper, ND Trinklein, ED Anton, L Nguyen, RM Myers
    posted to tez by olympos on 2007-11-24 04:17:34 as ** along with 2 people troels_marstrand xiaobeizhao
  • BLAT--the BLAST-like alignment tool.
    Genome Res, Vol. 12, No. 4. (April 2002), pp. 656-664.
    by WJ Kent
    posted to tez by olympos on 2007-11-24 04:16:40 as ** along with 19 people and 1 group bozdagd gpappas talponer operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre cjeans wenhan natstreet antonkratz inesdesantiago yoanjacquemin EisenLab
  • Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.
    Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15776-15781.
    by T Shiraki, S Kondo, S Katayama, K Waki, T Kasukawa, H Kawaji, R Kodzius, A Watahiki, M Nakamura, T Arakawa, S Fukuda, D Sasaki, A Podhajska, M Harbers, J Kawai, P Carninci, Y Hayashizaki
    posted to tez by olympos on 2007-11-24 04:14:59 as ** along with 5 people antonkratz setar troels_marstrand xiaobeizhao gjuggler
  • Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcription and organismic complexity.
    Genome Res (12 June 2006)
    by Miao Sun, Laurence D D Hurst, Gordon G G Carmichael, Jianjun Chen
    posted to antisense tez by olympos on 2007-11-18 22:13:01 as ** along with 2 people and 1 group xwbcn stajich Berkeley Mycology
  • FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.
    Genome Res (19 December 2006)
    by Paul G G Giresi, Jonghwan Kim, Ryan M M McDaniell, Vishwanath R R Iyer, Jason D D Lieb
    posted to faire tez by olympos on 2007-11-18 21:19:02 as ** along with 2 people and 1 group dpollard uz_labu_laimi EisenLab
  • Evidence for nucleosome depletion at active regulatory regions genome-wide.
    Nat Genet, Vol. 36, No. 8. (August 2004), pp. 900-905.
    by CK Lee, Y Shibata, B Rao, BD Strahl, JD Lieb
    posted to faire tez by olympos on 2007-11-18 21:18:36 as ** along with 1 person nucleosome
  • Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 839-851.
    by D Zheng, A Frankish, R Baertsch, P Kapranov, A Reymond, SW Choo, Y Lu, F Denoeud, SE Antonarakis, M Snyder, Y Ruan, CL Wei, TR Gingeras, R Guigó, J Harrow, MB Gerstein
    posted to pseudogene tez by olympos on 2007-11-18 21:17:37 as ** along with 2 people and 3 groups dchughes ghattem Bioinformatics G4ID Genetics-of-Gambling
  • GENCODE: producing a reference annotation for ENCODE
    Genome Biology, Vol. 7, No. Suppl 1. (2006)
    by Jennifer Harrow, France Denoeud, Adam Frankish, Alexandre Reymond, Chao K Chen, Jacqueline Chrast, Julien Lagarde, James Gilbert, Roy Storey, David Swarbreck, Colette Rossier, Catherine Ucla, Tim Hubbard, Stylianos Antonarakis, Roderic Guigo
    posted to tez by olympos on 2007-11-18 20:47:51 as ** along with 1 person wenhan
  • Origin of a substantial fraction of human regulatory sequences from transposable elements
    Trends in Genetics, Vol. 19, No. 2. (February 2003), pp. 68-72.
    by King I Jordan, Igor B Rogozin, Galina V Glazko, Eugene V Koonin
    posted to tez transposable_element by olympos on 2007-11-18 20:47:30 as **
  • Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays
    Nature Methods, Vol. 3, No. 7. (21 June 2006), pp. 511-518.
    by Peter J Sabo, Michael S Kuehn, Robert Thurman, Brett E Johnson, Ericka M Johnson, Hua Cao, Man Yu, Elizabeth Rosenzweig, Jeff Goldy, Andrew Haydock, Molly Weaver, Anthony Shafer, Kristin Lee, Fidencio Neri, Richard Humbert, Michael A Singer, Todd A Richmond, Michael O Dorschner, Michael Mcarthur, Michael Hawrylycz, Roland D Green, Patrick A Navas, William S Noble, John A Stamatoyannopoulos
    posted to dhs tez by olympos on 2007-11-18 20:46:29 as ** along with 1 person tuck
  • Pseudogenes: are they "junk" or functional DNA?
    Annu Rev Genet, Vol. 37 (2003), pp. 123-151.
    by ES Balakirev, FJ Ayala
    posted to pseudogene tez by olympos on 2007-11-18 20:45:02 as **
  • Integrated Pseudogene Annotation for Human Chromosome 22: Evidence for Transcription
    Journal of Molecular Biology, Vol. 349, No. 1. (27 May 2005), pp. 27-45.
    by Deyou Zheng, Zhaolei Zhang, Paul M Harrison, John Karro, Nick Carriero, Mark Gerstein
    posted to pseudogene tez by olympos on 2007-11-18 20:44:04 as **
  • The UCSC Table Browser data retrieval tool.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by D Karolchik, AS Hinrichs, TS Furey, KM Roskin, CW Sugnet, D Haussler, WJ Kent
    posted to tez by olympos on 2007-11-18 20:42:56 as ** along with 2 people miguel heliopais
  • Histone methylation in transcriptional control
    Current Opinion in Genetics & Development, Vol. 12, No. 2. (1 April 2002), pp. 198-209.
    by Tony Kouzarides
    posted to methylation tez by olympos on 2007-11-12 21:48:35 as **
  • A high-resolution map of active promoters in the human genome
    Nature (29 June 2005)
    by Tae H Kim, Leah O Barrera, Ming Zheng, Chunxu Qu, Michael A Singer, Todd A Richmond, Yingnian Wu, Roland D Green, Bing Ren
    posted to tez by olympos on 2007-11-12 21:47:51 as ** along with 6 people and 1 group imouthesmp okarsligil jfr tuck balicea sebastien_vigneau Bioinformatics
  • Antisense transcription in the mammalian transcriptome.
    Science, Vol. 309, No. 5740. (2 September 2005), pp. 1564-1566.
    by S Katayama, Y Tomaru, T Kasukawa, K Waki, M Nakanishi, M Nakamura, H Nishida, CC Yap, M Suzuki, J Kawai, H Suzuki, P Carninci, Y Hayashizaki, C Wells, M Frith, T Ravasi, KC Pang, J Hallinan, J Mattick, DA Hume, L Lipovich, S Batalov, PG Engström, Y Mizuno, MA Faghihi, A Sandelin, AM Chalk, S Mottagui-Tabar, Z Liang, B Lenhard, C Wahlestedt, , ,
    posted to antisense tez transcriptome by olympos on 2007-11-12 21:46:06 as ** along with 1 person xwbcn
  • Translating the Histone Code
    Science, Vol. 293, No. 5532. (10 August 2001), pp. 1074-1080.
    by Thomas Jenuwein, David C Allis
    posted to tez by olympos on 2007-11-12 21:45:11 as ** along with 1 person johncumbers
  • The landscape of histone modifications across 1% of the human genome in five human cell lines
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 691-707.
    by Christoph M Koch, Robert M Andrews, Paul Flicek, Shane C Dillon, Ulas Karaoz, Gayle K Clelland, Sarah Wilcox, David M Beare, Joanna C Fowler, Phillippe Couttet, Keith D James, Gregory C Lefebvre, Alexander W Bruce, Oliver M Dovey, Peter D Ellis, Pawandeep Dhami, Cordelia F Langford, Zhiping Weng, Ewan Birney, Nigel P Carter, David Vetrie, Ian Dunham
    posted to tez by olympos on 2007-11-12 21:35:44 as ** along with 6 people and 1 group xingxu jyuh djkt ghattem epigenetics maximilianh Bioinformatics
  • R: A Language for Data Analysis and Graphics
    Journal of Computational and Graphical Statistics, Vol. 5, No. 3. (1996), pp. 299-314.
    by Ross Ihaka, Robert Gentleman
    posted to tez by olympos on 2007-11-12 16:30:29 as ** along with 3 people dgruiz incovoma xingxu
  • Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse
    Cell, Vol. 120, No. 2. (28 January 2005), pp. 169-181.
    by Bradley E Bernstein, Michael Kamal, Kerstin Lindblad-Toh, Stefan Bekiranov, Dione K Bailey, Dana J Huebert, Scott Mcmahon, Elinor K Karlsson, Edward J Kulbokas, Thomas R Gingeras, Stuart L Schreiber, Eric S Lander
    posted to tez by olympos on 2007-11-11 21:04:46 as ** along with 2 people caseybrown inesdesantiago
  • Genome-wide map of nucleosome acetylation and methylation in yeast.
    Cell, Vol. 122, No. 4. (26 August 2005), pp. 517-527.
    by DK Pokholok, CT Harbison, S Levine, M Cole, NM Hannett, TI Lee, GW Bell, K Walker, PA Rolfe, E Herbolsheimer, J Zeitlinger, F Lewitter, DK Gifford, RA Young
    posted to tez by olympos on 2007-11-11 20:53:01 as ** along with 4 people and 1 group nucleosome kengg koller redfish99213 Plantandetc
  • Significance analysis of microarrays applied to the ionizing radiation response.
    Proc Natl Acad Sci U S A, Vol. 98, No. 9. (24 April 2001), pp. 5116-5121.
    by VG Tusher, R Tibshirani, G Chu
    posted to tez by olympos on 2007-11-11 18:37:18 as ** along with 8 people askrajiv miguel jen_drake gpalidwor ccr incovoma ugengma shikin
  • Histone H3 lysine 4 methylation patterns in higher eukaryotic genes
    Nat Cell Biol, Vol. 6, No. 1. (January 2004), pp. 73-77.
    by Robert Schneider, Andrew J Bannister, Fiona A Myers, Alan W Thorne, Colyn Crane-Robinson, Tony Kouzarides
    posted to tez by olympos on 2007-11-11 18:36:31 as **
  • Targeted Recruitment of Set1 Histone Methylase by Elongating Pol II Provides a Localized Mark and Memory of Recent Transcriptional Activity
    Molecular Cell, Vol. 11, No. 3. (March 2003), pp. 709-719.
    by Huck H Ng, Francois Robert, Richard A Young, Kevin Struhl
    posted to tez by olympos on 2007-11-11 18:35:57 as **
  • Active genes are tri-methylated at K4 of histone H3
    Nature, Vol. 419, No. 6905. (2002), pp. 407-411.
    by Helena Santos-Rosa, Robert Schneider, Andrew J Bannister, Julia Sherriff, Bradley E Bernstein, Tolga NC Emre, Stuart L Schreiber, Jane Mellor, Tony Kouzarides
    posted to tez by olympos on 2007-11-11 18:35:14 as **
  • Methylation of histone H3 Lys 4 in coding regions of active genes
    Proceedings of the National Academy of Sciences, Vol. 99, No. 13. (25 June 2002), pp. 8695-8700.
    by Bradley E Bernstein, Emily L Humphrey, Rachel L Erlich, Robert Schneider, Peter Bouman, Jun S Liu, Tony Kouzarides, Stuart L Schreiber
    posted to tez by olympos on 2007-11-11 18:34:39 as **
  • Regulation of chromatin structure by site-specific histone H3 methyltransferases
    Nature, Vol. 406, No. 6796. (2000), pp. 593-599.
    by Stephen Rea, Frank Eisenhaber, Donal O'Carroll, Brian D Strahl, Zu-Wen Sun, Manfred Schmid, Susanne Opravil, Karl Mechtler, Chris P Ponting, David C Allis, Thomas Jenuwein
    posted to tez by olympos on 2007-11-11 18:18:55 as **
  • Regulation of Transcription by a Protein Methyltransferase
    Science, Vol. 284, No. 5423. (25 June 1999), pp. 2174-2177.
    by Dagang Chen, Han Ma, Heng Hong, Stephen S Koh, Shih-Ming Huang, Brandon T Schurter, Dana W Aswad, Michael R Stallcup
    posted to tez by olympos on 2007-11-11 18:16:00 as **
  • Role of Histone H3 Lysine 27 Methylation in Polycomb-Group Silencing
    Science, Vol. 298, No. 5595. (1 November 2002), pp. 1039-1043.
    by Ru Cao, Liangjun Wang, Hengbin Wang, Li Xia, Hediye Erdjument-Bromage, Paul Tempst, Richard S Jones, Yi Zhang
    posted to histone tez by olympos on 2007-11-11 00:25:15 as **
  • Analysis of genome-wide histone acetylation state and enzyme binding using DNA microarrays.
    Methods Enzymol, Vol. 376 (2004), pp. 289-304.
    by D Robyr, SK Kurdistani, M Grunstein
    posted to acetylation histone tez by olympos on 2007-11-10 22:39:04 as **
  • The occurrence of Epsilon-N-Methyl. lysine in histones.
    Biochemistry, Vol. 3 (January 1964), pp. 10-15.
    by K Murray
    posted to tez by olympos on 2007-11-10 21:50:43 as **
  • Yeast histone H4 N-terminal sequence is required for promoter activation in vivo.
    Cell, Vol. 65, No. 6. (14 June 1991), pp. 1023-1031.
    by LK Durrin, RK Mann, PS Kayne, M Grunstein
    posted to tez by olympos on 2007-11-10 21:14:07 as **
  • The role of chromatin during transcription.
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 707-719.
    by B Li, M Carey, JL Workman
    posted to histone review tez transcription by olympos on 2007-11-10 20:58:58 as ** along with 5 people brant jyuh dchughes mikaelhuss RookieNo1
  • Histone acetyltransferases: function, structure, and catalysis.
    Curr Opin Genet Dev, Vol. 11, No. 2. (April 2001), pp. 155-161.
    by R Marmorstein, SY Roth
    posted to acetylation tez by olympos on 2007-11-10 19:16:23 as **
  • Histone methylation versus histone acetylation: new insights into epigenetic regulation.
    Curr Opin Cell Biol, Vol. 13, No. 3. (June 2001), pp. 263-273.
    by JC Rice, CD Allis
    posted to acetylation methylation tez by olympos on 2007-11-10 18:34:33 as **
  • Histone acetylation in chromatin structure and transcription
    Nature, Vol. 389, No. 6649. (1997), pp. 349-352.
    by Michael Grunstein
    posted to acetylation tez by olympos on 2007-11-10 17:51:53 as ** along with 1 person and 8 groups shantanu structural_bioinformatics MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology
  • Acetylation and methylation of histones and their possible role in the regulation of RNA synthesis.
    Proc Natl Acad Sci U S A, Vol. 51 (May 1964), pp. 786-794.
    by VG Allfrey, R Faulkner, AE Mirsky
    posted to tez by olympos on 2007-11-10 17:26:54 as **
  • Role of covalent modifications of histones in regulating gene expression
    Gene, Vol. 240, No. 1. (15 November 1999), pp. 1-12.
    by Virginia A Spencer, James R Davie
    posted to tez by olympos on 2007-11-10 17:21:29 as **
  • Predicting essential genes in fungal genomes
    Genome Res., Vol. 16, No. 9. (1 September 2006), pp. 1126-1135.
    by Michael Seringhaus, Alberto Paccanaro, Anthony Borneman, Michael Snyder, Mark Gerstein
    posted to bayesian tez by olympos on 2007-11-06 18:24:46 as ** along with 4 people balicea saket GustavoLacerda dbenn
  • Volume changes in protein evolution
    Journal of Molecular Biology, Vol. 236, No. 4. (4 March 1994), pp. 1067-1078.
    by Mark Gerstein, Erik L Sonnhammer, Cyrus Chothia
    posted to tez by olympos on 2007-11-05 17:35:45 as **
  • Large-scale identification of novel transcripts in the human genome.
    Genome Res (31 January 2007)
    by Brock A A Peters, Brad St Croix, Tobias Sjöblom, Jordan M M Cummins, Natalie Silliman, Janine Ptak, Saurabh Saha, Kenneth W W Kinzler, Christos Hatzis, Victor E E Velculescu
    posted to tez transcriptome by olympos on 2007-11-05 03:20:51 as ** along with 5 people and 3 groups jyuh jfr dchughes djkt grahamc G4ID ParkinsonLab_at_MaRS Genetics-of-Gambling
  • Localizing hotspots of antisense transcription
    Nucleic Acids Research, Vol. 35, No. 5. (March 2007), pp. 1488-1500.
    by Finocchiaro, Giacomo, Carro, Maria Stella, Francois, Stephanie, Parise, Paola, Dininni, Valentina, Muller, Heiko
    posted to antisense transcription by olympos on 2007-11-05 03:14:17 as ** along with 2 people johncumbers epigenetics
  • Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.
    Nat Genet (4 February 2007)
    by Nathaniel D D Heintzman, Rhona K K Stuart, Gary Hon, Yutao Fu, Christina W W Ching, R David D Hawkins, Leah O O Barrera, Sara Van Calcar, Chunxu Qu, Keith A A Ching, Wei Wang, Zhiping Weng, Roland D D Green, Gregory E E Crawford, Bing Ren
    posted to chromatin histone tez by olympos on 2007-11-05 03:09:47 as ** along with 7 people and 2 groups kengg djkt mgaldzic skoch3 epigenetics caseybrown inesdesantiago CHIP Plantandetc
  • Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction.
    Nucleic Acids Res, Vol. 34, No. 20. (2006), pp. 5943-5950.
    by U Ohler
    posted to promoter tez by olympos on 2007-11-05 03:07:41 as ** along with 1 person debasis
  • Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals.
    Nat Genet, Vol. 33 Suppl (March 2003), pp. 245-254.
    by R Jaenisch, A Bird
    posted to cpg epigenomics tez by olympos on 2007-11-05 03:07:12 as **
  • A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
    Cell, Vol. 125, No. 2. (21 April 2006), pp. 315-326.
    by BE Bernstein, TS Mikkelsen, X Xie, M Kamal, DJ Huebert, J Cuff, B Fry, A Meissner, M Wernig, K Plath, R Jaenisch, A Wagschal, R Feil, SL Schreiber, ES Lander
    posted to chromatin histone tez by olympos on 2007-11-05 03:03:12 as ** along with 1 person tuck
  • The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote.
    Genes Dev, Vol. 18, No. 11. (1 June 2004), pp. 1263-1271.
    by D Schübeler, DM MacAlpine, D Scalzo, C Wirbelauer, C Kooperberg, F van Leeuwen, DE Gottschling, LP O'Neill, BM Turner, J Delrow, SP Bell, M Groudine
    posted to histone tez by olympos on 2007-11-05 02:59:35 as **
  • Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
    Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050.
    by A Siepel, G Bejerano, JS Pedersen, AS Hinrichs, M Hou, K Rosenbloom, H Clawson, J Spieth, LW Hillier, S Richards, GM Weinstock, RK Wilson, RA Gibbs, WJ Kent, W Miller, D Haussler
    posted to alignment conservation tez by olympos on 2007-11-05 02:42:07 as ** along with 14 people and 2 groups pradiptaray bpb aprasad balajis eckart_bindewald indigoviolet brant adepace djkt sujaikumar Stew cisevol dmc elfar EisenLab cis-regulatory-evolution
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