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di neils library [420 articles]

Articoli aggiunti di recente nella biblioteca di neils ordinata per importanza .
  • Non-functional phosphorylations?
    Trends in Biochemical Sciences, Vol. In Press, Corrected Proof
    by Gustav E Lienhard
    posted to specificity phosphorylation hypothesis evolution by neils on 2008-07-06 07:44:14 as ** along with 1 person brianb
  • Food Idiosyncrasies: Beetroot and Asparagus
    Drug Metab Dispos, Vol. 29, No. 4. (1 April 2001), pp. 539-543.
    by SC Mitchell
    posted to review metabolism human genetics food by neils on 2008-07-06 05:08:10 as **
  • Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7.
    Nature protocols, Vol. 3, No. 7. (June 2008), pp. 1171-1179.
    by Gerrit Langer, Serge X X Cohen, Victor S S Lamzin, Anastassis Perrakis
    posted to xray software protocol modelling crystallography by neils on 2008-07-06 01:25:43 as **
  • Contextual Specificity in Peptide-Mediated Protein Interactions
    PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2524.
    by Amelie Stein, Patrick Aloy
    posted to specificity protein-protein peptide interaction energy context binding by neils on 2008-07-06 01:23:12 as **
  • Taxonomic distribution of large DNA viruses in the sea
    Genome Biology, Vol. 9, No. 7. (2008)
    by Adam Monier, Jean M Claverie, Hiroyuki Ogata
    posted to viruses taxonomy phylogeny marine ecology by neils on 2008-07-04 00:31:19 as **
  • Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ling Yang, Thomas Vondriska, Zhangang Han, Robb Maclellan, James Weiss, Zhilin Qu
    posted to topology protein-protein networks interaction bioinformatics by neils on 2008-07-04 00:29:49 as ** along with 2 people brianb renatomilani
  • Life Sciences and the web: a new era for collaboration
    Mol Syst Biol, Vol. 4 (1 July 2008)
    by Jonathan A Sagotsky, Le Zhang, Zhihui Wang, Sean Martin, Thomas S Deisboeck
    posted to wiki web20 review collaboration by neils on 2008-07-03 12:26:42 as ** along with 2 people dullhunk reyez
  • The split genes of Nanoarchaeum equitans are an ancestral character.
    Gene (11 June 2008)
    by Massimo Di Giulio
    posted to nanoarcheum introns hyperthermophily evolution archaea by neils on 2008-07-02 14:31:36 as **
  • A General System for Studying Protein-Protein Interactions in Gram-Negative Bacteria
    J. Proteome Res. (1 July 2008)
    by Dale A Pelletier, Gregory B Hurst, Linda J Foote, Patricia K Lankford, Catherine K Mckeown, Tse-Yuan Lu, Denise D Schmoyer, Manesh B Shah, Judson W Hervey, Hayes W Mcdonald, Brian S Hooker, William R Cannon, Don S Daly, Jason M Gilmore, Steven H Wiley, Deanna L Auberry, Yisong Wang, Frank W Larimer, Stephen J Kennel, Mitchel J Doktycz, Jennifer L Morrell-Falvey, Elizabeth T Owens, Michelle V Buchanan
    posted to tags protein-protein interaction bacteria affinity by neils on 2008-07-01 13:24:33 as ** along with 1 person brianb
  • The topology of the bacterial co-conserved protein network and its implications for predicting protein function
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Anis K Fard, Sonia Leach, Lawrence Hunter, Ryan Gill
    posted to topology protein-protein network interaction bacteria by neils on 2008-07-01 00:32:28 as **
  • Insight into the proteome of the hyperthermophilic Crenarchaeon Ignicoccus hospitalis: the major cytosolic and membrane proteins.
    Archives of microbiology (27 June 2008)
    by Tillmann Burghardt, Manfred Saller, Sonja Gürster, Daniel Müller, Carolin Meyer, Ulrike Jahn, Eduard Hochmuth, Rainer Deutzmann, Frank Siedler, Patrick Babinger, Reinhard Wirth, Harald Huber, Reinhard Rachel
    posted to proteomics membrane ignicoccus cytosol archaea by neils on 2008-06-29 04:48:48 as **
  • A protein functional leap: how a single mutation reverses the function of the transcription regulator TetR
    Nucl. Acids Res. (28 June 2008), gkn400.
    by Marcus Resch, Harald Striegl, Eva M Henssler, Madhumati Sevvana, Claudia Egerer-Sieber, Emile Schiltz, Wolfgang Hillen, Yves A Muller
    posted to tet structure-activity repressor protein mutation by neils on 2008-06-29 04:43:08 as **
  • Co-Evolving Motions at Protein-Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis
    Biochemistry (28 June 2008)
    by Hendrik Szurmant, Benjamin G Bobay, Robert A White, Daniel M Sullivan, Richele J Thompson, Terence Hwa, James A Hoch, John Cavanagh
    posted to two-component protein-protein nmr interaction dynamics covariance analysis by neils on 2008-06-28 09:02:46 as ** along with 2 people marck paulschlesinger
  • Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences
    Nucl. Acids Res. (27 June 2008), gkn390.
    by S Pitre, C North, M Alamgir, M Jessulat, A Chan, X Luo, JR Green, M Dumontier, F Dehne, A Golshani
    posted to yeast protein-protein prediction peptides interaction bioinformatics by neils on 2008-06-28 03:28:18 as ** along with 3 people renatomilani brianb pansapiens
  • Protein complex identification by supervised graph local clustering
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i250-268.
    by Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph
    posted to protein-protein interaction graph complexes clustering bioinformatics by neils on 2008-06-28 01:53:59 as ** along with 1 person chad_davis
  • Serine/threonine kinase (pk-1) is a component of Autographa californica multiple nucleopolyhedrovirus (AcMNPV) very late gene transcription complex and it phosphorylates a 102kDa polypeptide of the complex.
    Virus research (21 June 2008)
    by Gourav Mishra, Pooja Chadha, Rakha H H Das
    posted to virus phosphorylation kinase complexes autographa by neils on 2008-06-27 00:37:33 as **
  • A Phylogenomic Study of Birds Reveals Their Evolutionary History
    Science, Vol. 320, No. 5884. (27 June 2008), pp. 1763-1768.
    by Shannon J Hackett, Rebecca T Kimball, Sushma Reddy, Rauri C Bowie, Edward L Braun, Michael J Braun, Jena L Chojnowski, Andrew W Cox, Kin-Lan Han, John Harshman, Christopher J Huddleston, Ben D Marks, Kathleen J Miglia, William S Moore, Frederick H Sheldon, David W Steadman, Christopher C Witt, Tamaki Yuri
    posted to phylogeny nuclear evolution dna birds by neils on 2008-06-27 00:35:13 as ** along with 3 people whym dchughes gulsacan
  • Assembly reflects evolution of protein complexes
    Nature (18 June 2008)
    by Emmanuel D Levy, Elisabetta B Erba, Carol V Robinson, Sarah A Teichmann
    posted to structure quaternary protein-protein interaction evolution complexes assembly by neils on 2008-06-26 03:53:59 as ** along with 5 people psique phoenixzxl zwang jwm paulschlesinger
  • Differential gene expression of the honey bee Apis mellifera associated with Varroa destructor infection
    BMC Genomics, Vol. 9 (25 June 2008), 301.
    by M Navajas, A Migeon, C Alaux, Ml, GE Robinson, JD Evans, S Cros-Arteil, D Crauser, Y Le Conte
    posted to parasitism mites microarray expression differential bees apis by neils on 2008-06-26 02:18:23 as **
  • What makes pathogens pathogenic
    Genome Biology, Vol. 9, No. 6. (2008)
    by Garth Ehrlich, Luisa N Hiller, Fen Hu
    posted to review pathogen genetics environment by neils on 2008-06-25 01:16:06 as ** along with 1 person marck
  • Federated repositories of X-ray diffraction images
    Acta Crystallographica Section D, Vol. 64, No. 7. (Jul 2008), pp. 810-814.
    by Steve Androulakis, Jason Schmidberger, Mark A Bate, Ross Degori, Anthony Beitz, Cyrus Keong, Bob Cameron, Sheena Mcgowan, Corrine J Porter, Andrew Harrison, Jane Hunter, Jennifer L Martin, Bostjan Kobe, Renwick CJ Dobson, Michael W Parker, James C Whisstock, Joan Gray, Andrew Treloar, David Groenewegen, Neil Dickson, Ashley M Buckle
    posted to xray repository images database crystallography by neils on 2008-06-23 02:27:31 as **
  • GMODWeb: a web framework for the generic model organism database
    Genome Biology, Vol. 9, No. 6. (2008)
    by Brian O'Connor, Allen Day, Scott Cain, Olivier Arnaiz, Linda Sperling, Lincoln Stein
    posted to software perl gmod genomics framework bioinformatics by neils on 2008-06-21 03:05:23 as ** along with 4 people jyuh jamselem dullhunk tharris
  • The homotetrameric phosphoseryl-tRNA synthetase from Methanosarcina mazei exhibits half-of-the-sites activity.
    The Journal of biological chemistry (17 June 2008)
    by Scott I I Hauenstein, Ya-Ming M Hou, John J J Perona
    posted to trna synthesis methanosarcinaceae enzymology activity by neils on 2008-06-20 00:46:10 as **
  • Phosphorylation-Specific MS/MS Scoring for Rapid and Accurate Phosphoproteome Analysis
    J. Proteome Res. (19 June 2008)
    by Samuel H Payne, Margaret Yau, Marcus B Smolka, Stephen Tanner, Huilin Zhou, Vineet Bafna
    posted to scoring proteome phosphorylation phosphoproteins ms-ms bioinformatics by neils on 2008-06-19 09:14:49 as ** along with 1 person brianb
  • Global Impact of Oncogenic Src on a Phosphotyrosine Proteome
    J. Proteome Res. (19 June 2008)
    by Weifeng Luo, Robbert J Slebos, Salisha Hill, Ming Li, Jan Brábek, Ramars Amanchy, Raghothama Chaerkady, Akhilesh Pandey, Amy-Joan L Ham, Steven K Hanks
    posted to tyrosine src proteomics phosphorylation oncogene by neils on 2008-06-19 09:13:38 as **
  • Colander: A Probability-Based Support Vector Machine Algorithm for Automatic Screening for CID Spectra of Phosphopeptides Prior to Database Search
    J. Proteome Res. (19 June 2008)
    by Bingwen Lu, Cristian I Ruse, John R Yates
    posted to svm spectrometry phosphopeptides mass machine-learning database cid bioinformatics by neils on 2008-06-19 09:10:38 as **
  • The amphioxus genome and the evolution of the chordate karyotype
    Nature, Vol. 453, No. 7198. (19 June 2008), pp. 1064-1071.
    by Nicholas H Putnam, Thomas Butts, David E Ferrier, Rebecca F Furlong, Uffe Hellsten, Takeshi Kawashima, Marc Robinson-Rechavi, Eiichi Shoguchi, Astrid Terry, Jr-Kai Yu, E[grave]lia Benito-Gutierrez, Inna Dubchak, Jordi Garcia-Fernandez, Jeremy J Gibson-Brown, Igor V Grigoriev, Amy C Horton, Pieter J de Jong, Jerzy Jurka, Vladimir V Kapitonov, Yuji Kohara, Yoko Kuroki, Erika Lindquist, Susan Lucas, Kazutoyo Osoegawa, Len A Pennacchio, Asaf A Salamov, Yutaka Satou, Tatjana Sauka-Spengler, Jeremy Schmutz, Tadasu Shin-I, Atsushi Toyoda, Marianne Bronner-Fraser, Asao Fujiyama, Linda Z Holland, Peter W Holland, Nori Satoh, Daniel S Rokhsar
    posted to genome evolution chordate amphioxus by neils on 2008-06-19 00:52:46 as ** along with 1 person gulsacan
  • The Landscape of Human Proteins Interacting with Viruses and Other Pathogens
    PLoS Pathog, Vol. 4, No. 2. (Feb 2008)
    by Matthew D Dyer, Murali, Bruno W Sobral
    posted to virus protein-protein pathogen interaction human database bioinformatics by neils on 2008-06-18 13:51:04 as **
  • Snake Venomics of the Lancehead Pitviper Bothrops asper: Geographic, Individual, and Ontogenetic Variations
    J. Proteome Res. (17 June 2008)
    by Alberto Alape-Girón, Libia Sanz, José Escolano, Marietta Flores-Díaz, Marvin Madrigal, Mahmood Sasa, Juan J Calvete
    posted to venom snake proteomics evolution comparative by neils on 2008-06-18 01:41:35 as **
  • Isolation of microbes from Lake Vostok accretion ice.
    Applied and environmental microbiology (13 June 2008)
    by Tom D'Elia, Ram Veerapaneni, Scott O O Rogers
    posted to psychrophily lake-vostok isolation culture bacteria antarctic by neils on 2008-06-18 00:59:43 as **
  • Inferring modules of functionally interacting proteins using the Bond Energy Algorithm.
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Ryosuke Watanabe, Enrique Morett, Edgar Vallejo
    posted to protein-protein prediction interaction energy algorithms by neils on 2008-06-18 00:57:15 as **
  • PURE: a webserver for the prediction of domains in unassigned regions in proteins
    BMC Bioinformatics, Vol. 9 (14 June 2008), 281.
    by Chilamakuri CS Reddy, Shameer Khader, Bernard O Offmann, Ramanthan Sowdhamini
    posted to webserver regions protein prediction domain bioinformatics by neils on 2008-06-15 10:50:02 as ** along with 1 person niallhaslam
  • Phosphorylation of Protein Phosphatase 2Cζ by c-Jun NH2-Terminal Kinase at Ser92 Attenuates Its Phosphatase Activity
    Biochemistry (14 June 2008)
    by Kenjiro Awano, Kazutaka Amano, Yuko Nagaura, Shin-Ichiro Kanno, Seishi Echigo, Shinri Tamura, Takayasu Kobayashi
    posted to phosphorylation phosphatases c-jun activity by neils on 2008-06-14 07:29:38 as **
  • PhosphoScan: A Probability-Based Method for Phosphorylation Site Prediction Using MS2/MS3 Pair Information
    J. Proteome Res. (13 June 2008)
    by Yunhu Wan, Diane Cripps, Stefani Thomas, Patricia Campbell, Nicholas Ambulos, Ting Chen, Austin Yang
    posted to spectrometry probability prediction phosphorylation mass by neils on 2008-06-13 14:53:58 as **
  • Rewiring the Specificity of Two-Component Signal Transduction Systems
    Cell, Vol. 133 (2008), pp. 1043-1054.
    by Jeffrey M Skerker, Barrett S Perchuk, Albert Siryaporn, Emma A Lubin, Orr Ashenberg, Mark Goulian, Michael T Laub
    posted to two-component transduction signaling signal prokaryotic microbio envz bacteria by neils on 2008-06-13 01:10:10 as **
  • The protein structure prediction problem could be solved using the current PDB library.
    Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 1029-1034.
    by Y Zhang, J Skolnick
    posted to structure protein prediction pdb modelling homology casp by neils on 2008-06-12 07:42:10 as ** along with 9 people and 3 groups karbak iakes vavi marcius alexg j3xucite kracher schuylrp jfmuggs BioinfoCIPF Immunoinformatics SGU-CIPF
  • A Megaraptor-like theropod (Dinosauria: Tetanurae) in Australia: support for faunal exchange across eastern and western Gondwana in the Mid-Cretaceous
    Proceedings of the Royal Society B: Biological Sciences
    by Nathan D Smith, Peter J Makovicky, Federico L Agnolin, Martín D Ezcurra, Diego F Pais, Steven W Salisbury
    posted to palaeontology fossil evolution dinosaur australia by neils on 2008-06-12 01:07:52 as **
  • Phylogenetic distributions of British birds of conservation concern
    Proceedings of the Royal Society B: Biological Sciences
    by Gavin H Thomas
    posted to phylogeny ecology distribution conservation birds by neils on 2008-06-12 01:05:26 as **
  • A general target selection method for crystallographic proteomics.
    Methods in molecular biology (Clifton, N.J.), Vol. 426 (2008), pp. 27-35.
    by G Robin, NP Cowieson, G Guncar, JK Forwood, P Listwan, DA Hume, B Kobe, JL Martin, T Huber
    posted to target structure selection proteomics crystallography by neils on 2008-06-12 01:02:41 as **
  • Overview of the pipeline for structural and functional characterization of macrophage proteins at the University of Queensland.
    Methods in molecular biology (Clifton, N.J.), Vol. 426 (2008), pp. 577-587.
    by W Meng, JK Forwood, G Guncar, G Robin, NP Cowieson, P Listwan, D Mouradov, G King, IL Ross, J Robinson, M Puri, JM Hill, S Kellie, T Huber, DA Hume, JL Martin, B Kobe
    posted to uq structure methods macrophage genomics crystallography by neils on 2008-06-12 01:01:30 as **
  • Structural Genomics of the Bacterial Mobile Metagenome: an Overview.
    Methods in molecular biology (Clifton, N.J.), Vol. 426 (2008), pp. 589-595.
    by Andrew Robinson, Amy P Guilfoyle, Visaahini Sureshan, Michael Howell, Stephen J Harrop, Yan Boucher, Hatch W Stokes, Paul M Curmi, Bridget C Mabbutt
    posted to structure mobile methods metagenomics genomics gene cassette by neils on 2008-06-12 01:00:22 as **
  • PhosphoScore: An Open-Source Phosphorylation Site Assignment Tool for MSn Data
    J. Proteome Res. (11 June 2008)
    by Brian E Ruttenberg, Trairak Pisitkun, Mark A Knepper, Jason D Hoffert
    posted to spectrometry software phosphorylation opensource mass analysis by neils on 2008-06-11 13:05:16 as ** along with 2 people woaizuqiu brianb
  • AMYPdb: a database dedicated to amyloid precursor proteins
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Sandrine Pawlicki, Antony Le Bechec, Christian Delamarche
    posted to webserver protein folding database amyloid by neils on 2008-06-10 12:58:59 as **
  • PageRank without hyperlinks: reranking with PubMed related article networks for biomedical text retrieval
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jimmy Lin
    posted to pubmed publications pagerank networks literature by neils on 2008-06-08 08:57:17 as ** along with 6 people and 1 group chad_davis reyez msampson dullhunk Gaetan sobolevnrm baker-group
  • A korarchaeal genome reveals insights into the evolution of the Archaea.
    Proceedings of the National Academy of Sciences of the United States of America (5 June 2008)
    by James G G Elkins, Mircea Podar, David E E Graham, Kira S S Makarova, Yuri Wolf, Lennart Randau, Brian P P Hedlund, Céline Brochier-Armanet, Victor Kunin, Iain Anderson, Alla Lapidus, Eugene Goltsman, Kerrie Barry, Eugene V V Koonin, Phil Hugenholtz, Nikos Kyrpides, Gerhard Wanner, Paul Richardson, Martin Keller, Karl O O Stetter
    posted to koryarchaeum koryarchaeota genome evolution archaea by neils on 2008-06-08 08:54:30 as ** along with 2 people cmzmasek skato_toyaku
  • NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
    Nucl. Acids Res. (4 June 2008), gkn336.
    by Sylvain Brohee, Karoline Faust, Gipsi Lima-Mendez, Olivier Sand, Rekin's Janky, Gilles Vanderstocken, Yves Deville, Jacques van Helden
    posted to webserver software pathways networks cluster bioinformatics by neils on 2008-06-05 02:58:50 as ** along with 2 people balicea brianb
  • AMPK phosphorylation of raptor mediates a metabolic checkpoint.
    Molecular cell, Vol. 30, No. 2. (25 April 2008), pp. 214-226.
    by DM Gwinn, DB Shackelford, DF Egan, MM Mihaylova, A Mery, DS Vasquez, BE Turk, RJ Shaw
    posted to raptor phosphorylation kinase checkpoint amp-dependent by neils on 2008-06-05 00:45:34 as **
  • Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes
    Genome Res. (2008)
    by Nitin Gupta, Jamal Benhamida, Vipul Bhargava, Daniel Goodman, Elisabeth Kain, Ian Kerman, Ngan Nguyen, Noah Ollikainen, Jesse Rodriguez, Jian Wang, Mary S Lipton, Margaret Romine, Vineet Bafna, Richard D Smith, Pavel A Pevzner
    posted to spectrometry proteomics mass genomics comparative analysis by neils on 2008-06-03 03:17:56 as **
  • Getting Up Close and Personal with Your Genome
    Cell, Vol. 133, No. 5. (30 May 2008), pp. 753-756.
    by Laura Bonetta
    posted to personalised medicine genomics commentary 23andme by neils on 2008-06-03 02:34:53 as ** along with 1 person balicea
  • Large-scale analysis of gene clustering in bacteria
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 949-956.
    by Qingwu Yang, Sing-Hoi Sze
    posted to prediction operon genetics clustering bioinformatics bacteria by neils on 2008-06-03 02:29:35 as **
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