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di karbak library [105 articles]

Articoli aggiunti di recente nella biblioteca di karbak .
  • RNA-peptide fusions for the in vitro selection of peptides and proteins
    PNAS, Vol. 94, No. 23. (11 November 1997), pp. 12297-12302.
    by Richard W Roberts, Jack W Szostak
    posted to fusion peptide rna technique by karbak on 2007-06-09 18:01:21 as ***
  • Identifying structural motifs in proteins.
    Pac Symp Biocomput (2003), pp. 228-239.
    by R Singh, M Saha
    posted to 3dm by karbak on 2007-04-19 21:50:50 as **
  • TRILOGY: Discovery of sequence-structure patterns across diverse proteins.
    Proc Natl Acad Sci U S A, Vol. 99, No. 13. (25 June 2002), pp. 8500-8505.
    by P Bradley, PS Kim, B Berger
    posted to 3dm by karbak on 2007-04-19 21:50:16 as **
  • Structure alignment based on coding of local geometric measures
    BMC Bioinformatics, Vol. 7 (14 July 2006), 346.
    by Peter L Chang, Andrew W Rinne, Gregory T Dewey
    posted to 3dm by karbak on 2007-04-19 21:26:44 as **
  • MUSTANG: A multiple structural alignment algorithm
    Proteins: Structure, Function, and Bioinformatics, Vol. 64, No. 3. (2006), pp. 559-574.
    by Arun S Konagurthu, James C Whisstock, Peter J Stuckey, Arthur M Lesk
    posted to 3dm by karbak on 2007-04-19 21:26:31 as ** along with 4 people and 3 groups ana jwm rabio Thaverkamp structural_bioinformatics Bioinformatics Microbial-Ecology
  • ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification.
    BMC Bioinformatics, Vol. 7 (2006)
    by V Sam, CH Tai, J Garnier, JF Gibrat, B Lee, PJ Munson
    posted to 3dm by karbak on 2007-04-19 21:24:51 as ** along with 1 person rabio
  • Sensitivity and selectivity in protein structure comparison.
    Protein Sci, Vol. 13, No. 3. (March 2004), pp. 773-785.
    by ML Sierk, WR Pearson
    posted to 3dm by karbak on 2007-04-19 21:24:31 as ** along with 3 people and 2 groups ana pansapiens huyun110 structural_bioinformatics Bioinformatics
  • Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.
    J Mol Biol, Vol. 346, No. 4. (4 March 2005), pp. 1173-1188.
    by R Kolodny, P Koehl, M Levitt
    posted to 3dm by karbak on 2007-04-19 21:23:41 as ** along with 5 people and 2 groups ana lulab balajis analogAI reyez structural_bioinformatics Bioinformatics
  • Structures of protein complexes by multidimensional heteronuclear magnetic resonance spectroscopy.
    Crit Rev Biochem Mol Biol, Vol. 30, No. 5. (1995), pp. 351-385.
    by AM Gronenborn, GM Clore
    posted to nmr protein_structure by karbak on 2007-03-10 23:31:41 as **
  • Get ready for 24-hour living - health - 18 February 2006 - New Scientist
    New Scientist, No. 2539. (18 February 2006), 34.
    by Graham Lawson
    posted to general_interest sleep by karbak on 2006-11-22 22:16:49 as read
  • The fumarate sensor DcuS: progress in rapid protein fold elucidation by combining protein structure prediction methods with NMR spectroscopy
    Journal of Magnetic Resonance, Vol. 173, No. 2. (April 2005), pp. 310-316.
    by Jens Meiler, David Baker
    posted to david_baker nmr by karbak on 2006-03-31 22:36:55 as ***
  • All are not equal: A benchmark of different homology modeling programs
    Protein Sci, Vol. 14, No. 5. (1 May 2005), pp. 1315-1327.
    by Bjorn Wallner, Arne Elofsson
    posted to computational protein_structure structure_prediction by karbak on 2006-02-25 23:12:50 as *** along with 6 people and 2 groups cdeane marcius eweaver BioNica rsantana hmk BioinfoCIPF SGU-CIPF
  • MEK and Cdc2 Kinase Are Sequentially Required for Golgi Disassembly in MDCK Cells by the Mitotic Xenopus Extracts
    J. Cell Biol., Vol. 149, No. 2. (17 April 2000), pp. 357-368.
    by Fumi Kano, Katsuya Takenaka, Akitsugu Yamamoto, Kuniaki Nagayama, Eisuke Nishida, Masayuki Murata
    posted to golgi_mitosis by karbak on 2006-02-25 21:28:09 as **
  • In Search of an Essential Step during Mitotic Golgi Disassembly and Inheritance
    Experimental Cell Research, Vol. 271, No. 1. (15 November 2001), pp. 22-27.
    by Manojkumar A Puthenveedu, Adam D Linstedt
    posted to golgi_mitosis by karbak on 2006-02-25 21:24:05 as **
  • Cell-cycle-specific Golgi fragmentation: how and why?
    Curr Opin Cell Biol, Vol. 15, No. 4. (August 2003), pp. 462-467.
    by A Colanzi, C Suetterlin, V Malhotra
    posted to golgi_mitosis by karbak on 2006-02-25 21:08:52 as *
  • Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data.
    Proteins, Vol. 61, No. 1. (1 October 2005), pp. 21-35.
    by H Chen, HX Zhou
    posted to nmr protein_interaction by karbak on 2006-02-12 10:11:34 as ***
  • Intrinsic dynamics of an enzyme underlies catalysis
    Nature, Vol. 438, No. 7064., pp. 117-121.
    by Elan Z Eisenmesser, Oscar Millet, Wladimir Labeikovsky, Dmitry M Korzhnev, Magnus Wolf-Watz, Daryl A Bosco, Jack J Skalicky, Lewis E Kay, Dorothee Kern
    posted to catalysis nmr protein_dynamics by karbak on 2006-02-12 08:00:06 as **** along with 6 people BragilMassoud lna dlr tny jlh64 rph
  • Chaos game representation of gene structure.
    Nucleic Acids Res, Vol. 18, No. 8. (25 April 1990), pp. 2163-2170.
    by HJ Jeffrey
    posted to computational dna general_interest by karbak on 2006-02-04 19:44:37 as ***
  • Simshift: identifying structural similarities from NMR chemical shifts.
    Bioinformatics (29 November 2005)
    by Simon W W Ginzinger, Johannes Fischer
    posted to chem_shifts protein_structure by karbak on 2006-01-25 17:59:51 as ***
  • Log-normal Distributions across the Sciences: Keys and Clues
    BioScience, Vol. 51, No. 5. (1 May 2001), pp. 341-352.
    by E Limpert, WA Stahel, M Abbt
    posted to general_interest by karbak on 2006-01-19 02:33:38 as *** along with 9 people and 3 groups ansobol garyfeng ChaTo dfrankow harperf metamerist rubendrr feenstra kgajos ReadingLab GroupLens cytoskeleton-and-afm
  • Can a Biologist Fix a Radio? — or, What I Learned while Studying Apoptosis
    Biochemistry (Moscow), Vol. 69, No. 12. (2004), pp. 1403-1406.
    by Y Lazebnik
    posted to general_interest by karbak on 2006-01-19 02:26:59 as **
  • The Origins of Eukaryotic Gene Structure
    Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 450-468.
    by Michael Lynch
    posted to evolution by karbak on 2006-01-11 05:48:32 as ** along with 22 people and 9 groups stevanspringer dayjm Ayest indigoviolet tny xwbcn dchughes petecl penka mtagaya madhadron cmm brixtonmc zhangli msierk brettc web20student BioNica krishnaJCSG timflutre jwestbrook ArtemPankin EisenLab Computational_Systems_Biology Nie FAB-lab G4ID Bioinformatics_MDACC evo-devo King_Lab Genetics-of-Gambling
  • Thermodynamics of protein folding: a microscopic view.
    Biophys Chem, Vol. 100, No. 1-3. (2003), pp. 367-395.
    by T Lazaridis, M Karplus
    posted to protein_folding protein_structure thermodynamics by karbak on 2005-12-03 18:10:14 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Effective energy functions for protein structure prediction.
    Curr Opin Struct Biol, Vol. 10, No. 2. (April 2000), pp. 139-145.
    by T Lazaridis, M Karplus
    posted to energy_fxns protein_folding protein_structure review by karbak on 2005-12-03 18:08:58 as *** along with 2 people and 2 groups nigham marcius BioinfoCIPF SGU-CIPF
  • Branch-and-Terminate: a combinatorial optimization algorithm for protein design
    Structure, Vol. 7, No. 9. (September 1999), pp. 1089-1098.
    by DB Gordon, SL Mayo
    posted to protein_design protein_structure scp by karbak on 2005-12-03 18:03:49 as ***
  • Exploring the conformational space of protein side chains using dead-end elimination and the A* algorithm.
    Proteins, Vol. 33, No. 2. (1 November 1998), pp. 227-239.
    by AR Leach, AP Lemon
    posted to protein_design protein_structure scp by karbak on 2005-12-03 17:34:27 as **
  • A graph-theory algorithm for rapid protein side-chain prediction.
    Protein Sci, Vol. 12, No. 9. (September 2003), pp. 2001-2014.
    by AA Canutescu, AA Shelenkov, RL Dunbrack
    posted to protein_design protein_structure scp by karbak on 2005-12-03 17:31:15 as ** along with 9 people nigham bicko blackbart bluvsh1 rsantana mijam jwm carlk newton1234
  • Modeling side-chain conformation for homologous proteins using an energy-based rotamer search.
    J Mol Biol, Vol. 229, No. 4. (20 February 1993), pp. 996-1006.
    by C Wilson, LM Gregoret, DA Agard
    posted to protein_structure scp by karbak on 2005-12-03 17:29:57 as ***
  • Modelling protein side-chain conformations using constraint logic programming.
    Comput Chem, Vol. 26, No. 1. (December 2001), pp. 85-95.
    by MT Swain, GJ Kemp
    posted to protein_design protein_structure scp by karbak on 2005-12-03 17:25:25 as *** along with 1 person carlk
  • Improved side-chain prediction accuracy using an ab initio potential energy function and a very large rotamer library.
    Protein Sci, Vol. 13, No. 3. (March 2004), pp. 735-751.
    by RW Peterson, PL Dutton, AJ Wand
    posted to protein_design protein_structure scp by karbak on 2005-12-03 17:17:27 as *** along with 2 people blackbart carlk
  • Half right.
    Genome Biol, Vol. 6, No. 10. (2005)
    by GA Petsko
    posted to general_interest by karbak on 2005-11-24 23:55:21 as ***
  • Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation.
    J Biomol NMR, Vol. 21, No. 1. (September 2001), pp. 11-29.
    by JA Cromsigt, CW Hilbers, SS Wijmenga
    posted to chem_shifts rna shift_prediction by karbak on 2005-11-14 18:10:33 as ***
  • Bayesian statistical analysis of protein side-chain rotamer preferences.
    Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681.
    by RL Dunbrack, FE Cohen
    posted to protein_structure structure_prediction by karbak on 2005-11-10 07:20:58 as *** along with 12 people and 1 group nknii j3xucite dgront blackbart kazemi rsantana hmk LamBras mijam jwm phoenixzxl zwang TCR_Signaling
  • Simultaneous determination of protein structure and dynamics
    Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132.
    by Kresten Lindorff-Larsen, Robert B Best, Mark A Depristo, Christopher M Dobson, Michele Vendruscolo
    posted to dynamics protein_structure by karbak on 2005-11-08 23:11:22 as ***** along with 12 people and 2 groups apaydin barry lillekatt baaden lna dgront allmensch daevans rsantana jlh64 biehl rph structural_bioinformatics Bioinformatics
  • Advantages of fine-grained side chain conformer libraries
    Protein Engineering, Design and Selection, Vol. 16, No. 12. (December 2003), pp. 963-969.
    by Reshma P Shetty, Paul I de Bakker, Mark A Depristo, Tom L Blundell
    posted to protein_structure structure_prediction by karbak on 2005-11-08 22:58:29 as *****
  • Methods for molecular dynamics simulations of protein folding/unfolding in solution
    Methods, Vol. 34, No. 1. (September 2004), pp. 112-120.
    by David A Beck, Valerie Daggett
    posted to protein_folding tocopy by karbak on 2005-11-06 16:25:31 as ** along with 1 person choonpeng
  • Computational methods for generating models of denatured and partially folded proteins
    Methods, Vol. 34, No. 1. (September 2004), pp. 144-150.
    by Lorna J Smith
    posted to protein_folding protein_structure tocopy by karbak on 2005-11-06 15:52:35 as *** along with 1 person allmensch
  • Principles that govern the folding of protein chains.
    Science, Vol. 181, No. 96. (20 July 1973), pp. 223-230.
    by CB Anfinsen
    posted to protein_folding protein_structure tocopy by karbak on 2005-11-06 15:29:08 as **** along with 4 people thaliana fjc1 rabio granujilla
  • The structure of scientific collaboration networks
    (12 Jul 2000)
    by MEJ Newman
    posted to mlp by karbak on 2005-10-18 22:07:18 as read along with 8 people and 4 groups korakot PatrickD pdlug annagold elijahwright soblo ianturton salvoscellato Philosophy_of_Information DocSci Blog_and_Wiki_Research Wikipedia
  • The structure and function of complex networks
    (25 March 2003)
    by MEJ Newman
    posted to mlp by karbak on 2005-10-18 22:06:48 as *** along with 48 people and 14 groups phauly snuppepuppan korakot trunov rmj001 mrm Nichtich pdlug xxc momonga nkorf ChaTo imouthesmp ldietz rahul tuck lyongu cwoodward yish scottmoody ddahlem danieltruemper gane5h fukken AbnerCYH anon_pl shashikant esayre azygmunt adriandefroment kray carolaccs mylit ransombriggs theus jmarcelino salvoscellato Kwisatz ffloeck AnneB daniel51 xleonzhao thecolourblue SimonGarnier apwesolowski dpf rrbarb Diego_Prada Philosophy_of_Information Blog_and_Wiki_Research SRA_at_IRST IS-Lab Semantic-Social-Networks Wikipedia mathgamespatterns semantic-multicast-routing SRL dtl vds-arg eni AGH-IISG CSBBGraphTheory
  • Data clustering: a review
    ACM Comput. Surv., Vol. 31, No. 3. (September 1999), pp. 264-323.
    by AK Jain, MN Murty, PJ Flynn
    posted to mlp by karbak on 2005-10-18 22:04:14 as *** along with 44 people and 14 groups mercutio egh ericyu dgruiz pdlug thsant mapio mhay davidbrooks imouthesmp dfrankow rahul marcius stagediver sterovetta sangeetha chadhogg sdvillal dgront styliani alexhofmann gane5h ianturton bigbossman perceptron allmensch aviad_work julianpan atbrew sugarexpletive KillianKay mkolar sajan dvisoin theodora jcsilva furykerry koles paulovn AbnerCYH tnhh flaviovdf dragonrez iraklis video_retrieval kdl GroupLens Bioinformatics SRL insilicodrug BioinfoCIPF SGU-CIPF MScResearchRessources NDSiTransitRessources NDS106ProjectRessources NDSIntraVehicularResearch ahat Community_SSTZ
  • Foundations of a query and simulation system for the modeling of biochemical and biological processes.
    Pac Symp Biocomput (2003), pp. 116-127.
    by M Antoniotti, F Park, A Policriti, N Ugel, B Mishra
    posted to computational general_interest by karbak on 2005-08-06 00:16:44 as **
  • Clustering algorithms for identifying core atom sets and for assessing the precision of protein structure ensembles
    Proteins: Structure, Function, and Genetics, Vol. 59, No. 4. (8 April 2005), pp. 673-686.
    by David A Snyder, Gaetano T Montelione
    posted to nmr protein_structure by karbak on 2005-08-05 10:28:56 as *** along with 3 people and 2 groups ana barry dgront structural_bioinformatics Bioinformatics
  • An amino acid has two sides: a new 2D measure provides a different view of solvent exposure.
    Proteins, Vol. 59, No. 1. (1 April 2005), pp. 38-48.
    by T Hamelryck
    posted to apbc2006 by karbak on 2005-07-21 12:03:59 as read along with 3 people nickolay massivemayhem gisle
  • Evolution of the protein repertoire.
    Science, Vol. 300, No. 5626. (13 June 2003), pp. 1701-1703.
    by C Chothia, J Gough, C Vogel, SA Teichmann
    posted to general_interest genomics protein_structure by karbak on 2005-07-18 02:37:15 as **** along with 3 people and 2 groups ana barry tny structural_bioinformatics Bioinformatics
  • Relationship between protein structures and disulfide-bonding patterns.
    Proteins, Vol. 53, No. 1. (1 October 2003), pp. 1-5.
    by CC Chuang, CY Chen, JM Yang, PC Lyu, JK Hwang
    posted to disulfide protein_structure structure_prediction by karbak on 2005-07-18 02:31:03 as ***
  • A fluoroquinolone resistance protein from Mycobacterium tuberculosis that mimics DNA.
    Science, Vol. 308, No. 5727. (3 June 2005), pp. 1480-1483.
    by SS Hegde, MW Vetting, SL Roderick, LA Mitchenall, A Maxwell, HE Takiff, JS Blanchard
    posted to protein_structure tb by karbak on 2005-06-09 21:35:33 as **
  • Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2347-2355.
    by RJ Morris, RJ Najmanovich, A Kahraman, JM Thornton
    posted to computational protein_structure by karbak on 2005-06-03 22:36:03 as *** along with 1 person tjimenez
  • Structure-based systems biology: a zoom lens for the cell.
    FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1854-1858.
    by P Aloy, RB Russell
    posted to no-tag by karbak on 2005-05-25 12:15:24 as ** along with 4 people and 2 groups barry lyongu biosv chad_davis structural_bioinformatics Bioinformatics
  • Evolution of protein structures and functions.
    Curr Opin Struct Biol, Vol. 12, No. 3. (June 2002), pp. 400-408.
    by LN Kinch, NV Grishin
    posted to protein_structure review by karbak on 2005-05-25 12:14:59 as **** along with 5 people and 7 groups korakot matzke ana barry joergkurtwegner Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
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