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di jyuh interactome [109 articles]

Articoli aggiunti di recente alla biblioteca di jyuh classificati sotto il tag interactome. You can also see everyone's interactome.
  • Identification of novel Smad2 and Smad3 associated proteins in response to TGF-beta1.
    Journal of cellular biochemistry, Vol. 105, No. 2. (1 October 2008), pp. 596-611.
    by KA Brown, AJ Ham, CN Clark, N Meller, BK Law, A Chytil, N Cheng, JA Pietenpol, HL Moses
    posted to tgfb smad interactome by jyuh on 2008-09-26 16:12:30 as **
  • NetGrep: fast network schema searches in interactomes
    Genome Biology, Vol. 9, No. 9. (2008)
    by Eric Banks, Elena Nabieva, Ryan Peterson, Mona Singh
    posted to network interactome by jyuh on 2008-09-24 06:12:12 as ** along with 2 people barriot neils
  • InterDom: a database of putative interacting protein domains for validating predicted protein interactions and complexes.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 251-254.
    by SK Ng, Z Zhang, SH Tan, K Lin
    posted to interactome domain database by jyuh on 2008-09-24 06:10:46 as ** along with 1 person antonkratz
  • FunNet: an integrative tool for exploring transcriptional interactions.
    Bioinformatics (Oxford, England) (17 September 2008)
    by Edi Prifti, Jean-Daniel D Zucker, Karine Clement, Corneliu Henegar
    posted to interactome by jyuh on 2008-09-24 06:03:04 as **
  • Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by Y Yamanishi, M Araki, A Gutteridge, W Honda, M Kanehisa
    posted to interactome drug by jyuh on 2008-09-24 05:59:18 as ** along with 1 person jfr
  • Modelling genotype-phenotype relationships and human disease with genetic interaction networks
    J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1559-1566.
    by Ben Lehner
    posted to phenotype network interactome by jyuh on 2008-09-24 03:43:10 as ** along with 3 people and 1 group tharris balicea winterschlaefer C. elegans / WormBase
  • InteroPorc: Automated Inference of Highly Conserved Protein Interaction Networks.
    Bioinformatics (Oxford, England) (28 May 2008)
    by Magali Michaut, Samuel Kerrien, Luisa Montecchi-Palazzi, Franck Chauvat, Corinne Cassier-Chauvat, Jean-Christophe C Aude, Pierre Legrain
    posted to software interactome by jyuh on 2008-09-24 03:41:18 as ** along with 4 people cabbagesofdoom neils renatomilani cerca
  • A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge
    BMC Bioinformatics, Vol. 9 (18 September 2008), 382.
    by Young-Rae Cho, Lei Shi, Murali Ramanathan, Aidong Zhang
    posted to semantic interactome function by jyuh on 2008-09-23 03:03:10 as ** along with 1 person grahamc
  • GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function.
    Genome biology, Vol. 9 Suppl 1 (2008)
    by S Mostafavi, D Ray, D Warde-Farley, C Grouios, Q Morris
    posted to software interactome by jyuh on 2008-09-17 10:59:10 as **
  • Predicting PDZ domain–peptide interactions from primary sequences
    Nature Biotechnology, Vol. 26, No. 9. (17 August 2008), pp. 1041-1045.
    by Jiunn R Chen, Bryan H Chang, John E Allen, Michael A Stiffler, Gavin Macbeath
    posted to pdz interactome by jyuh on 2008-09-17 10:30:26 as ** along with 3 people phoenixzxl cabbagesofdoom zwang
  • eSGA: E. coli synthetic genetic array analysis
    Nature Methods, Vol. 5, No. 9. (01 August 2008), pp. 789-795.
    by Gareth Butland, Mohan Babu, Javier J Díaz-Mejía, Fedyshyn Bohdana, Sadhna Phanse, Barbara Gold, Wenhong Yang, Joyce Li, Alla G Gagarinova, Oxana Pogoutse, Hirotada Mori, Barry L Wanner, Henry Lo, Jas Wasniewski, Constantine Christopoulos, Mehrab Ali, Pascal Venn, Anahita Safavi-Naini, Natalie Sourour, Simone Caron, Ja-Yeon Choi, Ludovic Laigle, Anaies Nazarians-Armavil, Avnish Deshpande, Sarah Joe, Kirill A Datsenko, Natsuko Yamamoto, Brenda J Andrews, Charles Boone, Huiming Ding, Bilal Sheikh, Gabriel Moreno-Hagelsieb, Jack F Greenblatt, Andrew Emili
    posted to interactome ecoli by jyuh on 2008-09-12 16:13:13 as **
  • A fluorescent two-hybrid (F2H) assay for direct visualization of protein interactions in living cells.
    Molecular & cellular proteomics : MCP (12 July 2008)
    by Kourosh Zolghadr, Oliver Mortusewicz, Ulrich Rothbauer, Regina Kleinhans, Heike Goehler, Erich E E Wanker, M Cristina C Cardoso, Heinrich Leonhardt
    posted to interactome fluorescence by jyuh on 2008-09-12 16:01:19 as **
  • Monitoring interactions between receptor tyrosine kinases and their downstream effector proteins in living cells using bioluminescence resonance energy transfer.
    Molecular pharmacology, Vol. 72, No. 6. (December 2007), pp. 1440-1446.
    by PK Tan, J Wang, PL Littler, KK Wong, TA Sweetnam, W Keefe, NR Nash, EC Reding, F Piu, MR Brann, HH Schiffer
    posted to interactome bret by jyuh on 2008-09-11 07:40:57 as **
  • Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andrew Bordner, Andrey Gorin
    posted to interactome database by jyuh on 2008-09-11 07:31:27 as ** along with 4 people chad_davis neils phoenixzxl bicko
  • Comparative analysis of five protein-protein interaction corpora
    BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008)
    by Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Bjorne, Filip Ginter, Tapio Salakoski
    posted to interactome by jyuh on 2008-09-11 07:04:17 as ** along with 7 people and 2 groups farzanehs laughcry kluck vlachmore aprildh31 anthropomorphism gilesc BioInfPDL Proteasome
  • Analysis on multi-domain cooperation for predicting protein-protein interactions
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Rui S Wang, Yong Wang, Ling Y Wu, Xiang S Zhang, Luonan Chen
    posted to interactome domain by jyuh on 2008-09-10 16:37:16 as ** along with 2 people zwang phoenixzxl
  • Identifying functional modules in protein-protein interaction networks: an integrated exact approach
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i223-231.
    by Marcus T Dittrich, Gunnar W Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Muller
    posted to interactome by jyuh on 2008-09-10 16:34:07 as ** along with 6 people jfr chad_davis marck renatomilani tmmurali dragonrez
  • Multi-agent-based bio-network for systems biology: protein-protein interaction network as an example.
    Amino acids, Vol. 35, No. 3. (October 2008), pp. 565-572.
    by LH Ren, YS Ding, YZ Shen, XF Zhang
    posted to systems-biology interactome by jyuh on 2008-09-10 16:31:40 as **
  • Protein-protein interaction detection in vitro and in cells by proximity biotinylation.
    Journal of the American Chemical Society, Vol. 130, No. 29. (23 July 2008), pp. 9251-9253.
    by M Fernández-Suárez, TS Chen, AY Ting
    posted to interactome by jyuh on 2008-09-10 16:31:06 as **
  • Discovering functional interaction patterns in protein-protein interaction networks
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Mehmet Turanalp, Tolga Can
    posted to interactome by jyuh on 2008-09-10 16:29:58 as ** along with 4 people and 1 group maralena Tingting renatomilani aprildh31 Proteasome
  • HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures.
    Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008)
    by N Fukuhara, T Kawabata
    posted to interactome by jyuh on 2008-09-10 15:54:59 as ** along with 2 people bicko chad_davis
  • InterProSurf: a web server for predicting interacting sites on protein surfaces.
    Bioinformatics (12 October 2007)
    by Surendra S S Negi, Catherine H H Schein, Numan Oezguen, Trevor D D Power, Werner Braun
    posted to interactome by jyuh on 2008-09-10 15:51:22 as ** along with 3 people bicko grahamc Ema
  • meta-PPISP: a meta web server for protein-protein interaction site prediction.
    Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3386-3387.
    by S Qin, HX Zhou
    posted to interactome by jyuh on 2008-09-10 15:51:16 as ** along with 3 people bicko grahamc marti
  • The interface of protein-protein complexes: Analysis of contacts and prediction of interactions.
    Cell Mol Life Sci (15 December 2007)
    by R P Bahadur, M Zacharias
    posted to interactome by jyuh on 2008-09-10 10:31:47 as ** along with 3 people bicko higueruelo marti
  • High-Quality Binary Protein Interaction Map of the Yeast Interactome Network
    Science (21 August 2008), 1158684.
    by Haiyuan Yu, Pascal Braun, Muhammed A Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E Hudson, Juyong Park, Xiaofeng Xin, Michael E Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E Hill, Marc Vidal
    posted to yeast interactome by jyuh on 2008-09-02 11:30:11 as ** along with 9 people and 1 group gracio reyez mdperry dullhunk Petersarkies grahamc yeastyboy maralena neils BenosLab
  • Mapping multiprotein complexes by affinity purification and mass spectrometry.
    Current opinion in biotechnology (30 June 2008)
    by Mark O O Collins, Jyoti S S Choudhary
    posted to tap ms interactome by jyuh on 2008-09-02 11:29:57 as ** along with 1 person nuin
  • High confidence determination of specific protein-protein interactions using quantitative mass spectrometry.
    Current opinion in biotechnology (27 June 2008)
    by Michiel Vermeulen, Nina C C Hubner, Matthias Mann
    posted to interactome ms by jyuh on 2008-08-22 17:28:07 as ** along with 1 person brianb
  • SH3-Hunter: discovery of SH3 domain interaction sites in proteins.
    Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007)
    by E Ferraro, D Peluso, A Via, G Ausiello, M Helmer-Citterich
    posted to interactome by jyuh on 2008-08-19 04:52:49 as **
  • Reaching for high-hanging fruit in drug discovery at protein–protein interfaces
    Nature, Vol. 450, No. 7172. (12 December 2007), pp. 1001-1009.
    by James A Wells, Christopher L Mcclendon
    posted to drug interactome by jyuh on 2008-08-18 14:30:07 as ** along with 5 people cjeans chgjb phoenixzxl higueruelo bicko
  • Identifying gene-disease associations using centrality on a literature mined gene-interaction network
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i277-285.
    by Arzucan Ozgur, Thuy Vu, Gunes Erkan, Dragomir R Radev
    posted to candidate-gene genetics interactome pubmed text-mining by jyuh on 2008-08-17 04:00:43 as ** along with 1 person maralena
  • Integrating protein-protein interactions and text mining for protein function prediction
    BMC Bioinformatics, Vol. 9, No. Suppl 8. (2008)
    by Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich R Schuhmann
    posted to function interactome text-mining by jyuh on 2008-08-17 03:53:03 as ** along with 6 people raiyar farzanehs jiny bootsy reyez phoenixzxl
  • Protein interactions in human genetic diseases
    Genome Biology, Vol. 9, No. 1. (2008)
    by Benjamin S Bockler, Alex Bateman
    posted to genetics interactome by jyuh on 2008-08-17 02:12:38 as ** along with 10 people and 2 groups barry balicea frohike neils grahamc aconesa biomcgary barriot mingzhi mclarenv Bioinformatics McCammon
  • Protein-protein interactions and membrane localization of the human organic solute transporter.
    American journal of physiology. Gastrointestinal and liver physiology, Vol. 292, No. 6. (June 2007)
    by AQ Sun, N Balasubramaniyan, K Xu, CJ Liu, VM Ponamgi, H Liu, FJ Suchy
    posted to interactome oat by jyuh on 2008-08-16 07:47:19 as **
  • Supervised inference of gene-regulatory networks
    BMC Bioinformatics, Vol. 9 (04 January 2008), 2.
    by Cuong C To, Jiri Vohradsky
    posted to interactome promoter by jyuh on 2008-08-16 01:44:50 as ** along with 2 people shigepong gracio
  • Protein-protein interactions: from global to local analyses.
    Current opinion in biotechnology (6 August 2008)
    by Wp Kelly, Mph Stumpf
    posted to interactome by jyuh on 2008-08-14 14:48:32 as **
  • Searching the Protein Interaction Space Through the MINT Database.
    Methods in molecular biology (Clifton, N.J.), Vol. 484 (2008), pp. 305-317.
    by A Chatr-Aryamontri, A Zanzoni, A Ceol, G Cesareni
    posted to interactome by jyuh on 2008-08-14 14:24:05 as **
  • Binding MOAD, a high-quality protein-ligand database.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by ML Benson, RD Smith, NA Khazanov, B Dimcheff, J Beaver, P Dresslar, J Nerothin, HA Carlson
    posted to interactome by jyuh on 2008-08-14 14:23:17 as ** along with 2 people massivemayhem higueruelo
  • PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by CY Yang, CH Chang, YL Yu, TC Lin, SA Lee, CC Yen, JM Yang, JM Lai, YR Hong, TL Tseng, KM Chao, CY Huang
    posted to interactome kinase phosphorylation by jyuh on 2008-08-14 14:08:46 as ** along with 1 person grahamc
  • Bacteriome.org--an integrated protein interaction database for E. coli.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008)
    by C Su, JM Peregrin-Alvarez, G Butland, S Phanse, V Fong, A Emili, J Parkinson
    posted to bacteria interactome by jyuh on 2008-08-14 13:44:14 as **
  • DOMINE: a database of protein domain interactions.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008)
    by B Raghavachari, A Tasneem, TM Przytycka, R Jothi
    posted to interactome domain by jyuh on 2008-08-14 13:43:53 as ** along with 2 people carlk marck
  • DIMA 2.0 predicted and known domain interactions.
    Nucleic Acids Res (13 November 2007)
    by Philipp Pagel, Matthias Oesterheld, Oksana Tovstukhina, Norman Strack, Volker Stümpflen, Dmitrij Frishman
    posted to interactome domain by jyuh on 2008-08-14 13:43:06 as ** along with 2 people chad_davis kintoki
  • PDZBase: a protein-protein interaction database for PDZ-domains.
    Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 827-828.
    by T Beuming, L Skrabanek, MY Niv, P Mukherjee, H Weinstein
    posted to interactome pdz by jyuh on 2008-08-14 13:38:07 as ** along with 2 people and 1 group pdelosri IrinaMoreira EPFL_SB_ITP_LBS
  • PepCyber:P~PEP: a database of human protein protein interactions mediated by phosphoprotein-binding domains.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008)
    by W Gong, D Zhou, Y Ren, Y Wang, Z Zuo, Y Shen, F Xiao, Q Zhu, A Hong, X Zhou, X Gao, T Li
    posted to interactome by jyuh on 2008-08-14 13:26:13 as ** along with 1 person renatomilani
  • A General System for Studying Protein−Protein Interactions in Gram-Negative Bacteria
    J. Proteome Res. (1 July 2008)
    by Dale A Pelletier, Gregory B Hurst, Linda J Foote, Patricia K Lankford, Catherine K Mckeown, Tse-Yuan Lu, Denise D Schmoyer, Manesh B Shah, Judson W Hervey, Hayes W Mcdonald, Brian S Hooker, William R Cannon, Don S Daly, Jason M Gilmore, Steven H Wiley, Deanna L Auberry, Yisong Wang, Frank W Larimer, Stephen J Kennel, Mitchel J Doktycz, Jennifer L Morrell-Falvey, Elizabeth T Owens, Michelle V Buchanan
    posted to interactome by jyuh on 2008-08-12 11:11:32 as ** along with 2 people neils brianb
  • Fluorescence-based methods in the study of protein-protein interactions in living cells.
    Current opinion in biotechnology (14 July 2008)
    by Francisco Ciruela
    posted to interactome fret bifc by jyuh on 2008-08-10 02:13:12 as ** along with 1 person alexfuerstenberg
  • Monitoring the interference of protein-protein interactions in vivo by bimolecular fluorescence complementation: the DnaK case.
    Proteomics (6 August 2008)
    by Montse Morell, Patricia Czihal, Ralf Hoffmann, Laszlo Otvos, Francesc X X Avilés, Salvador Ventura
    posted to bifc interactome by jyuh on 2008-08-10 02:09:06 as **
  • Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Liang H Chu, Bor S Chen
    posted to cancer interactome by jyuh on 2008-08-10 00:46:25 as ** along with 3 people jfr reyez renatomilani
  • Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences
    Nucl. Acids Res. (27 June 2008), gkn390.
    by S Pitre, C North, M Alamgir, M Jessulat, A Chan, X Luo, JR Green, M Dumontier, F Dehne, A Golshani
    posted to interactome yeast by jyuh on 2008-08-09 16:58:45 as ** along with 5 people zwang brianb neils pansapiens renatomilani
  • Analysis of Transient Phosphorylation-Dependent Protein-Protein Interactions in Living Mammalian Cells Using Split-TEV
    BMC Biotechnology, Vol. 8 (13 July 2008), 55.
    by Michael C Wehr, Lisa Reinecke, Anna Botvinnik, Moritz J Rossner
    posted to split-tev phosphorylation interactome by jyuh on 2008-08-09 16:53:55 as **
  • The BioGRID Interaction Database: 2008 update.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by BJ Breitkreutz, C Stark, T Reguly, L Boucher, A Breitkreutz, M Livstone, R Oughtred, DH Lackner, J Bähler, V Wood, K Dolinski, M Tyers
    posted to database interactome by jyuh on 2008-08-09 11:03:46 as ** along with 1 person raiyar
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