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di jasonflannick library [55 articles]

Articoli aggiunti di recente nella biblioteca di jasonflannick .
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  • RNA meets chromatin.
    Genes Dev, Vol. 19, No. 14. (15 July 2005), pp. 1635-1655.
    by E Bernstein, CD Allis
  • Identification of higher-order functional domains in the human ENCODE regions
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 917-927.
    by Robert E Thurman, Nathan Day, William S Noble, John A Stamatoyannopoulos
  • The landscape of histone modifications across 1% of the human genome in five human cell lines
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 691-707.
    by Christoph M Koch, Robert M Andrews, Paul Flicek, Shane C Dillon, Ulas Karaoz, Gayle K Clelland, Sarah Wilcox, David M Beare, Joanna C Fowler, Phillippe Couttet, Keith D James, Gregory C Lefebvre, Alexander W Bruce, Oliver M Dovey, Peter D Ellis, Pawandeep Dhami, Cordelia F Langford, Zhiping Weng, Ewan Birney, Nigel P Carter, David Vetrie, Ian Dunham
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
  • Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 787-797.
    by Zhengdong D Zhang, Alberto Paccanaro, Yutao Fu, Sherman Weissman, Zhiping Weng, Joseph Chang, Michael Snyder, Mark B Gerstein
  • Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1.
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 798-806.
    by H Xi, Y Yu, Y Fu, J Foley, A Halees, Z Weng
    posted to encode by jasonflannick on 2008-07-11 17:16:41 as ** along with 1 person ghattem
  • Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 720-731.
    by Nathan D Trinklein, Ulas Karaoz, Jiaqian Wu, Anason Halees, Force, Patrick J Collins, Deyou Zheng, Zhengdong D Zhang, Mark B Gerstein, Michael Snyder, Richard M Myers, Zhiping Weng
    posted to encode by jasonflannick on 2008-07-11 17:16:38 as ** along with 5 people guhjy djkt olympos cjeans Garamonfok
  • The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 732-745.
    by Joel S Rozowsky, Daniel Newburger, Fred Sayward, Jiaqian Wu, Greg Jordan, Jan O Korbel, Ugrappa Nagalakshmi, Jin Yang, Deyou Zheng, Roderic Guigo, Thomas R Gingeras, Sherman Weissman, Perry Miller, Michael Snyder, Mark B Gerstein
  • Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs).
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 828-838.
    by Y Ruan, HS Ooi, SW Choo, KP Chiu, XD Zhao, KG Srinivasan, F Yao, CY Choo, J Liu, P Ariyaratne, WG Bin, VA Kuznetsov, A Shahab, WK Sung, G Bourque, N Palanisamy, CL Wei
  • Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome.
    Genome Res (21 November 2006)
    by Olof Emanuelsson, Ugrappa Nagalakshmi, Deyou Zheng, Joel S S Rozowsky, Alexander E E Urban, Jiang Du, Zheng Lian, Viktor Stolc, Sherman Weissman, Michael Snyder, Mark Gerstein
    posted to encode by jasonflannick on 2008-07-11 17:16:15 as ** along with 2 people GeeSharpMinor eckart_bindewald
  • Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 746-759.
    by France Denoeud, Philipp Kapranov, Catherine Ucla, Adam Frankish, Robert Castelo, Jorg Drenkow, Julien Lagarde, Tyler Alioto, Caroline Manzano, Jacqueline Chrast, Sujit Dike, Carine Wyss, Charlotte N Henrichsen, Nancy Holroyd, Mark C Dickson, Ruth Taylor, Zahra Hance, Sylvain Foissac, Richard M Myers, Jane Rogers, Tim Hubbard, Jennifer Harrow, Roderic Guigo, Thomas R Gingeras, Stylianos E Antonarakis, Alexandre Reymond
  • Genome-wide analysis of mammalian promoter architecture and evolution
    Nature Genetics, Vol. 38, No. 6. (28 April 2006), pp. 626-635.
    by Piero Carninci, Albin Sandelin, Boris Lenhard, Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin AM Semple, Martin S Taylor, Pär G Engström, Martin C Frith, Alistair RR Forrest, Wynand B Alkema, Sin L Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M Grimmond, Christine A Wells, Valerio Orlando, Claes Wahlestedt, Edison T Liu, Matthias Harbers, Jun Kawai, Vladimir B Bajic, David A Hume, Yoshihide Hayashizaki
  • Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution
    Science, Vol. 308, No. 5725. (20 May 2005), pp. 1149-1154.
    by Jill Cheng, Philipp Kapranov, Jorg Drenkow, Sujit Dike, Shane Brubaker, Sandeep Patel, Jeffrey Long, David Stern, Hari Tammana, Gregg Helt, Victor Sementchenko, Antonio Piccolboni, Stefan Bekiranov, Dione K Bailey, Madhavan Ganesh, Srinka Ghosh, Ian Bell, Daniela S Gerhard, Thomas R Gingeras
  • A systems biology approach to anatomic diversity of skin.
    The Journal of investigative dermatology, Vol. 128, No. 4. (April 2008), pp. 776-782.
    by JL Rinn, JK Wang, H Liu, K Montgomery, M van de Rijn, HY Chang
    posted to epigenetics by jasonflannick on 2008-07-10 20:17:51 as **
  • A dermal HOX transcriptional program regulates site-specific epidermal fate.
    Genes & development, Vol. 22, No. 3. (1 February 2008), pp. 303-307.
    by JL Rinn, JK Wang, N Allen, SA Brugmann, AJ Mikels, H Liu, TW Ridky, HS Stadler, R Nusse, JA Helms, HY Chang
    posted to epigenetics by jasonflannick on 2008-07-10 20:17:47 as **
  • A histone H3 lysine 27 demethylase regulates animal posterior development
    Nature (12 September 2007)
    by Fei Lan, Peter E Bayliss, John L Rinn, Johnathan R Whetstine, Jordon K Wang, Shuzhen Chen, Shigeki Iwase, Roman Alpatov, Irina Issaeva, Eli Canaani, Thomas M Roberts, Howard Y Chang, Yang Shi
    posted to epigenetics by jasonflannick on 2008-07-10 20:17:42 as ** along with 1 person shailptl
  • Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1311-1323.
    by JL Rinn, M Kertesz, JK Wang, SL Squazzo, X Xu, SA Brugmann, LH Goodnough, JA Helms, PJ Farnham, E Segal, HY Chang
  • Anatomic Demarcation by Positional Variation in Fibroblast Gene Expression Programs
    PLoS Genetics, Vol. 2, No. 7. (1 July 2006), e119.
    by John L Rinn, Chanda Bondre, Hayes B Gladstone, Patrick O Brown, Howard Y Chang
  • A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
    Cell, Vol. 125, No. 2. (21 April 2006), pp. 315-326.
    by BE Bernstein, TS Mikkelsen, X Xie, M Kamal, DJ Huebert, J Cuff, B Fry, A Meissner, M Wernig, K Plath, R Jaenisch, A Wagschal, R Feil, SL Schreiber, ES Lander
    posted to epigenetics by jasonflannick on 2008-07-10 20:13:35 as ** along with 2 people tuck olympos
  • Genome-scale DNA methylation maps of pluripotent and differentiated cells
    Nature (06 July 2008)
    by Alexander Meissner, Tarjei S Mikkelsen, Hongcang Gu, Marius Wernig, Jacob Hanna, Andrey Sivachenko, Xiaolan Zhang, Bradley E Bernstein, Chad Nusbaum, David B Jaffe, Andreas Gnirke, Rudolf Jaenisch, Eric S Lander
  • Genomic Maps and Comparative Analysis of Histone Modifications in Human and Mouse
    Cell, Vol. 120, No. 2. (28 January 2005), pp. 169-181.
    by Bradley E Bernstein, Michael Kamal, Kerstin Lindblad-Toh, Stefan Bekiranov, Dione K Bailey, Dana J Huebert, Scott Mcmahon, Elinor K Karlsson, Edward J Kulbokas, Thomas R Gingeras, Stuart L Schreiber, Eric S Lander
  • The Mammalian Epigenome
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 669-681.
    by Bradley E Bernstein, Alexander Meissner, Eric S Lander
    posted to epigenetics by jasonflannick on 2008-07-10 20:11:20 as ** along with 3 people guhjy slevy03 karfunkel
  • Genomic views of chromatin
    Current Opinion in Genetics & Development, Vol. 15, No. 5. (October 2005), pp. 476-481.
    by Dana J Huebert, Bradley E Bernstein
    posted to epigenetics by jasonflannick on 2008-07-10 20:10:45 as ** along with 2 people textoris inesdesantiago
  • Molecular regulation of H3K4 trimethylation by ASH2L, a shared subunit of MLL complexes
    Nature Structural & Molecular Biology, Vol. 13, No. 9. (06 August 2006), pp. 852-854.
    by Melissa M Steward, Jung-Shin Lee, Aisling O'Donovan, Matt Wyatt, Bradley E Bernstein, Ali Shilatifard
    posted to epigenetics by jasonflannick on 2008-07-10 20:10:38 as **
  • Genome-wide analysis of histone modifications by ChIP-on-chip.
    Methods, Vol. 40, No. 4. (December 2006), pp. 365-369.
    posted to epigenetics by jasonflannick on 2008-07-10 20:10:31 as ** along with 2 people guhjy dchughes
  • In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state
    Nature (06 June 2007)
    by Marius Wernig, Alexander Meissner, Ruth Foreman, Tobias Brambrink, Manching Ku, Konrad Hochedlinger, Bradley E Bernstein, Rudolf Jaenisch
  • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    Nature (01 July 2007)
    by Tarjei S Mikkelsen, Manching Ku, David B Jaffe, Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung Kim, Richard P Koche, William Lee, Eric Mendenhall, Aisling O’donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S Lander, Bradley E Bernstein
  • Chromatin state maps: new technologies, new insights
    Current Opinion in Genetics & Development, Vol. 18, No. 2. (April 2008), pp. 109-115.
    by Eric M Mendenhall, Bradley E Bernstein
    posted to epigenetics by jasonflannick on 2008-07-10 20:09:15 as **
  • Dissecting direct reprogramming through integrative genomic analysis
    Nature (28 May 2008)
    by Tarjei S Mikkelsen, Jacob Hanna, Xiaolan Zhang, Manching Ku, Marius Wernig, Patrick Schorderet, Bradley E Bernstein, Rudolf Jaenisch, Eric S Lander, Alexander Meissner
  • Timescales of Genetic and Epigenetic Inheritance
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 655-668.
    by Oliver J Rando, Kevin J Verstrepen
    posted to epigenetics by jasonflannick on 2008-07-10 19:58:00 as ** along with 2 people olympos cambray
  • Theoretical Analysis of Epigenetic Cell Memory by Nucleosome Modification
    Cell, Vol. 129, No. 4. (18 May 2007), pp. 813-822.
    by Ian B Dodd, Mille A Micheelsen, Kim Sneppen, Genevieve Thon
  • Epigenetic gene regulation in the bacterial world.
    Microbiol Mol Biol Rev, Vol. 70, No. 3. (September 2006), pp. 830-856.
    by J Casadesús, D Low
    posted to epigenetics by jasonflannick on 2008-07-10 19:57:05 as ** along with 2 people knaseanka cambray
  • Stability and flexibility of epigenetic gene regulation in mammalian development
    Nature, Vol. 447, No. 7143. (23 May 2007), pp. 425-432.
    by Wolf Reik
  • Perceptions of epigenetics
    Nature, Vol. 447, No. 7143. (23 May 2007), pp. 396-398.
    by Adrian Bird
  • Detecting recent positive selection in the human genome from haplotype structure
    Nature, Vol. 419, No. 6909. (24 October 2002), pp. 832-837.
    by Pardis C Sabeti, David E Reich, John M Higgins, Haninah Z Levine, Daniel J Richter, Stephen F Schaffner, Stacey B Gabriel, Jill V Platko, Nick J Patterson, Gavin J Mcdonald, Hans C Ackerman, Sarah J Campbell, David Altshuler, Richard Cooper, Dominic Kwiatkowski, Ryk Ward, Eric S Lander
  • Evaluation of common variants in the six known maturity-onset diabetes of the young (MODY) genes for association with type 2 diabetes.
    Diabetes, Vol. 56, No. 3. (March 2007), pp. 685-693.
    posted to postdocs by jasonflannick on 2008-06-12 03:36:39 as **
  • Type 2 diabetes-associated missense polymorphisms KCNJ11 E23K and ABCC8 A1369S influence progression to diabetes and response to interventions in the Diabetes Prevention Program.
    Diabetes, Vol. 56, No. 2. (February 2007), pp. 531-536.
    by JC Florez, KA Jablonski, SE Kahn, PW Franks, D Dabelea, RF Hamman, WC Knowler, DM Nathan, D Altshuler
    posted to postdocs by jasonflannick on 2008-06-12 03:36:29 as **
  • Copy number variation: New insights in genome diversity
    Genome Res., Vol. 16, No. 8. (1 August 2006), pp. 949-961.
    by Jennifer L Freeman, George H Perry, Lars Feuk, Richard Redon, Steven A Mccarroll, David M Altshuler, Hiroyuki Aburatani, Keith W Jones, Chris Tyler-Smith, Matthew E Hurles, Nigel P Carter, Stephen W Scherer, Charles Lee
  • Guilt beyond a reasonable doubt
    Nature Genetics, Vol. 39, No. 7., pp. 813-815.
    by David Altshuler, Mark Daly
  • Genome-Wide Association Analysis Identifies Loci for Type 2 Diabetes and Triglyceride Levels.
    Science (26 April 2007)
    by Richa Saxena, Benjamin F F Voight, Valeriya Lyssenko, Noel P P Burtt, Paul I W I de Bakker, Hong Chen, Jeffrey J J Roix, Sekar Kathiresan, Joel N N Hirschhorn, Mark J J Daly, Thomas E E Hughes, Leif Groop, David Altshuler, Peter Almgren, Jose C C Florez, Joanne Meyer, Kristin Ardlie, Kristina Bengtsson, Bo Isomaa, Guillaume Lettre, Ulf Lindblad, Helen N N Lyon, Olle Melander, Christopher Newton-Cheh, Peter Nilsson, Marju Orho-Melander, Lennart Råstam, Elizabeth K K Speliotes, Marja-Riitta R Taskinen, Tiinamaija Tuomi, Candace Guiducci, Anna Berglund, Joyce Carlson, Lauren Gianniny, Rachel Hackett, Liselott Hall, Johan Holmkvist, Esa Laurila, Marketa Sjögren, Maria Sterner, Aarti Surti, Margareta Svensson, Malin Svensson, Ryan Tewhey, Brendan Blumenstiel, Melissa Parkin, Matthew Defelice, Rachel Barry, Wendy Brodeur, Jody Camarata, Nancy Chia, Mary Fava, John Gibbons, Bob Handsaker, Claire Healy, Kieu Nguyen, Casey Gates, Carrie Sougnez, Diane Gage, Marcia Nizzari, Stacey B B Gabriel, Gung-Wei W Chirn, Qicheng Ma, Hemang Parikh, Delwood Richardson, Darrell Ricke, Shaun Purcell
  • Copy-number variation and association studies of human disease.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
  • Challenges and standards in integrating surveys of structural variation.
    Nat Genet, Vol. 39, No. 7 Suppl. (July 2007)
    by SW Scherer, C Lee, E Birney, DM Altshuler, EE Eichler, NP Carter, ME Hurles, L Feuk
  • Six new loci associated with blood low-density lipoprotein cholesterol, high-density lipoprotein cholesterol or triglycerides in humans.
    Nat Genet (13 January 2008)
    by Sekar Kathiresan, Olle Melander, Candace Guiducci, Aarti Surti, Noël P P Burtt, Mark J J Rieder, Gregory M M Cooper, Charlotta Roos, Benjamin F F Voight, Aki S S Havulinna, Björn Wahlstrand, Thomas Hedner, Dolores Corella, E Shyong S Tai, Jose M M Ordovas, Göran Berglund, Erkki Vartiainen, Pekka Jousilahti, Bo Hedblad, Marja-Riitta R Taskinen, Christopher Newton-Cheh, Veikko Salomaa, Leena Peltonen, Leif Groop, David M M Altshuler, Marju Orho-Melander
    posted to postdocs by jasonflannick on 2008-06-12 03:32:32 as ** along with 3 people Terkko caseybrown guhjy
  • Estimation of the multiple testing burden for genomewide association studies of nearly all common variants.
    Genet Epidemiol (17 March 2008)
    by Itsik Pe'er, Roman Yelensky, David Altshuler, Mark J J Daly
    posted to postdocs by jasonflannick on 2008-06-12 03:32:16 as **
  • Drift, Admixture, and Selection in Human Evolution: A Study with DNA Polymorphisms
    Proceedings of the National Academy of Sciences, Vol. 88, No. 3. (1 February 1991), pp. 839-843.
  • Molecular signatures of natural selection.
    Annu Rev Genet, Vol. 39 (2005), pp. 197-218.
    by R Nielsen
  • Positive selection on the human genome.
    Human molecular genetics, Vol. 13 Spec No 2 (1 October 2004)
    by EJ Vallender, BT Lahn
  • Genome-wide scans for loci under selection in humans.
    Human genomics, Vol. 2, No. 2. (June 2005), pp. 113-125.
    by J Ronald, JM Akey
    posted to population-genetics review selection by jasonflannick on 2008-05-23 23:22:06 as **
  • Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification.
    Proc Natl Acad Sci U S A, Vol. 103, No. 38. (19 September 2006), pp. 14062-14067.
    by SI Lee, D Pe'er, AM Dudley, GM Church, D Koller
  • Linkage disequilibrium — understanding the evolutionary past and mapping the medical future
    Nature Reviews Genetics, Vol. 9, No. 6., pp. 477-485.
    by Montgomery Slatkin
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