Registrati | Log in | FAQ      [?] 

di indigoviolet watchlist [747 articles]

Gli articoli piu' recenti che soddisfano i criteri di watchlist di di indigoviolet
  • Genomic Analysis of Adaptive Differentiation in Drosophila melanogaster
    Genetics, Vol. 179, No. 1. (1 May 2008), pp. 455-473.
    by Thomas L Turner, Mia T Levine, Melissa L Eckert, David J Begun
    posted to drosophila clinal adaptation by stajich to the group EisenLab on 2008-05-21 04:40:09 as ***** along with 1 person and 1 group pradiptaray Berkeley Mycology
  • Levers and fulcrums: progress in cis-regulatory motif models
    Nature Methods, Vol. 5, No. 4., pp. 297-298.
    by Ewan Birney
    posted to cis-regulatory comparative_genomics methods motif prediction by stajich to the group EisenLab on 2008-04-07 16:11:40 as ** along with 3 people and 1 group isimpson pradiptaray emptyhb Berkeley Mycology
  • Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome
    Genome Res. (7 November 2007), gr.6691007.
    by Peter Andolfatto
    posted to drosophila hitchhiking positive_selection by dpollard to the group EisenLab on 2008-02-13 06:38:24 as *** along with 3 people djkt usagi-kirin mimulus_99
  • Gene Network Inference via Structural Equation Modeling in Genetical Genomics Experiments.
    Genetics (3 February 2008)
    by Bing Liu, Alberto de la Fuente, Ina Hoeschele
    posted to eqtl method network system by dpollard to the group EisenLab on 2008-02-12 23:12:26 as *** along with 5 people caseybrown jyuh raiyar xingxu smgomez
  • Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster
    Genetics (3 February 2008), genetics.107.082032.
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
    posted to cis-regulatory transcription by stajich to the group EisenLab on 2008-02-04 08:13:01 as ** along with 3 people mimulus_99 brant djkt
  • Multi-scale correlations in continuous genomic data.
    Pac Symp Biocomput (2008), pp. 201-215.
    by RE Thurman, WS Noble, JA Stamatoyannopoulos
    posted to correlation histone hypersensitive nucleosome by dpollard to the group EisenLab on 2008-02-01 07:05:30 as ** along with 2 people jyuh operon
  • Using DNA duplex stability information for transcription factor binding site discovery.
    Pac Symp Biocomput (2008), pp. 453-464.
    by R Gordân, AJ Hartemink
    posted to binding_site biophysical_model method motif_detection prediction transcription_factor by dpollard to the group EisenLab on 2008-02-01 06:21:42 as ** along with 1 person bootsy
  • Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast.
    Pac Symp Biocomput (2008), pp. 489-500.
    by RW Lusk, MB Eisen
    posted to affinity binding_site transcription_factor variation yeast by dpollard to the group EisenLab on 2008-02-01 06:19:09 as read along with 1 person and 1 group maximilianh cis-regulatory-evolution
  • Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
    posted to alignment alignment_accuracy by dpollard to the group EisenLab on 2008-02-01 06:16:51 as *** along with 23 people and 1 group pradiptaray jdelcampo timflutre gracio adacier jyuh bpb aprasad dayjm tny djkt cjeans zwang lisa1 cactus biomcgary lilou kinestetika dandaman gjuggler renatomilani mclarenv youdon microbiology_nijmegen
  • The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses.
    Pac Symp Biocomput (2008), pp. 25-36.
    by S Nelesen, K Liu, D Zhao, CR Linder, T Warnow
    posted to accuracy alignment alignment_accuracy method multiple_alignment phylogeny reconstruction by dpollard to the group EisenLab on 2008-02-01 06:14:52 as **
  • Multiple RTK pathways downregulate Groucho-mediated repression in Drosophila embryogenesis.
    Development (23 January 2008)
    by Einat Cinnamon, Aharon Helman, Rachel Ben-Haroush Schyr, Amir Orian, Gerardo Jiménez, Ze'ev Paroush
    posted to post_transcriptional_modification repression by dpollard to the group EisenLab on 2008-02-01 06:09:59 as **
  • Delimiting the conserved features of hunchback function for the trunk organization of insects.
    Development (23 January 2008)
    by Henrique Marques-Souza, Manuel Aranda, Diethard Tautz
    posted to drosophila expression_pattern gene_function_evolution insects pattern targets transcription_factor tribolium by dpollard to the group EisenLab on 2008-02-01 06:06:54 as **
  • Evigan: A Hidden Variable Model for Integrating Gene Evidence for Eukaryotic Gene Prediction.
    Bioinformatics (10 January 2008)
    by Qian Liu, Aaron J J Mackey, David S S Roos, Fernando C N C Pereira
    posted to combiners comparative gene_prediction genome_annotation by stajich to the group EisenLab on 2008-01-13 21:12:18 as ** along with 2 people and 1 group gongScience mingzhi Berkeley Mycology
  • Fungal CSL transcription factors
    BMC Genomics, Vol. 8 (13 July 2007), 233.
    by Martin Prevorovsky, Frantisek Puta, Petr Folk
    posted to fungal notch transcription_factor by stajich to the group EisenLab on 2008-01-11 19:44:32 as ** along with 1 group Berkeley Mycology
  • Contrasting the Efficacy of Selection on the X and Autosomes in Drosophila.
    Mol Biol Evol (13 December 2007)
    by Nadia D D Singh, Amanda M M Larracuente, Andrew G G Clark
    posted to drosophila selection x_vs_autosomes by dpollard to the group EisenLab on 2008-01-11 18:03:53 as ****
  • CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction
    Genome Biology, Vol. 8 (20 December 2007), R269.
    by Samuel S Gross, Chuong B Do, Marina Sirota, Serafim Batzoglou
    posted to comparative_genomics gene_prediction by stajich to the group EisenLab on 2007-12-23 21:48:05 as *** along with 2 people and 1 group GustavoLacerda renatomilani Berkeley Mycology
  • Distinguishing protein-coding and noncoding genes in the human genome
    Proceedings of the National Academy of Sciences (26 November 2007), 0709013104.
    by Michele Clamp, Ben Fry, Mike Kamal, Xiaohui Xie, James Cuff, Michael F Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S Lander
    posted to annotation comparative_genomics gene_finding genome_annotation human noncoding orf by stajich to the group EisenLab on 2007-12-09 07:19:20 as ** along with 15 people and 2 groups Ema tmmurali rvosa balicea sebastien_vigneau giovanni neils cjeans cabbagezs maximilianh oelemento gjuggler slroberd renatomilani gracio FAB-lab Berkeley Mycology
  • Characterization of the Duffy gene promoter: evidence for tissue-specific abolishment of expression in Fy(a-b-) of black individuals.
    Biochem Biophys Res Commun, Vol. 222, No. 3. (24 May 1996), pp. 852-859.
    by S Iwamoto, J Li, N Sugimoto, H Okuda, E Kajii
    posted to cis_regulatory_elements expression_divergence expression_pattern expression_polymorphism human modularity regulatory_evolution regulatory_sequence_evolution by dpollard to the group EisenLab on 2007-12-05 23:03:10 as *** along with 1 group cis-regulatory-evolution
  • Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus.
    Am J Hum Genet, Vol. 66, No. 5. (May 2000), pp. 1669-1679.
    by MT Hamblin, A Di Rienzo
    posted to binding_site cis_regulatory_elements regulatory_evolution regulatory_polymorphism regulatory_sequence_evolution turnover by dpollard to the group EisenLab on 2007-12-05 22:53:19 as *** along with 1 group cis-regulatory-evolution
  • Disruption of a GATA motif in the Duffy gene promoter abolishes erythroid gene expression in Duffy-negative individuals.
    Nat Genet, Vol. 10, No. 2. (June 1995), pp. 224-228.
    by C Tournamille, Y Colin, JP Cartron, C Le Van Kim
    posted to binding_site cis_regulatory_elements regulatory_evolution regulatory_polymorphism regulatory_sequence_evolution turnover by dpollard to the group EisenLab on 2007-12-05 22:51:02 as *** along with 1 group cis-regulatory-evolution
  • Transcriptional regulation of a pair-rule stripe in Drosophila.
    Genes Dev, Vol. 5, No. 5. (May 1991), pp. 827-839.
    by S Small, R Kraut, T Hoey, R Warrior, M Levine
    posted to drosophila embryonic_patterning grammar repression seminal_paper by dpollard to the group EisenLab on 2007-12-05 19:31:27 as ** along with 1 person lusk
  • Transcriptional regulatory code of a eukaryotic genome
    Nature, Vol. 431, No. 7004. (2004), pp. 99-104.
    by Christopher T Harbison, Benjamin D Gordon, Tong I Lee, Nicola J Rinaldi, Kenzie D Macisaac, Timothy W Danford, Nancy M Hannett, Jean-Bosco Tagne, David B Reynolds, Jane Yoo, Ezra G Jennings, Julia Zeitlinger, Dmitry K Pokholok, Manolis Kellis, Alex P Rolfe, Ken T Takusagawa, Eric S Lander, David K Gifford, Ernest Fraenkel, Richard A Young
    posted to chip_chip cis_regulatory_elements yeast by dpollard to the group EisenLab on 2007-12-04 00:29:15 as read along with 22 people and 7 groups kristallreiner mariakmejia brant alokm tuck chad_davis lyongu kaspermunch balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee cisevol njcitulike xili03 Bioinformatics FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
  • CONTRAST: de novo gene prediction using a semi-Markov conditional random field. Biomedical Computation at Stanford Symposium Proceedings (BCATS)
    (2005)
    by SS Gross, CB Do, S Batzoglou
    posted to algorithm gene-prediction by indigoviolet to the group EisenLab on 2007-12-03 10:26:37 as **
  • Computational identification of evolutionarily conserved exons
    Proceedings of the eighth annual international conference on Research in computational molecular biology (2004), pp. 177-186.
    by A Siepel, D Haussler
    posted to algorithm gene-prediction by indigoviolet to the group EisenLab on 2007-12-03 10:23:23 as **
  • Dominant gain-of-function mutations that lead to misregulation of the C. elegans heterochronic gene lin-14, and the evolutionary implications of dominant mutations in pattern-formation genes.
    Dev Suppl, Vol. 1 (1991), pp. 47-54.
    by G Ruvkun, B Wightman, T Bürglin, P Arasu
    posted to cis_regulatory_elements co_dominance dominance nematode semi_dominance seminal_paper by dpollard to the group EisenLab on 2007-11-26 00:38:21 as ***
  • Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter.
    Proc Natl Acad Sci U S A, Vol. 72, No. 3. (March 1975), pp. 784-788.
    by D Pribnow
    posted to binding_site cis_regulatory_elements conservation seminal_paper by dpollard to the group EisenLab on 2007-11-26 00:28:07 as read
  • Accounting for Bias from Sequencing Error in Population Genetic Estimates.
    Mol Biol Evol (2 November 2007)
    by Philip L F L Johnson, Montgomery Slatkin
    posted to parameter_estimation polymorphism population_genetics sequencing_error by dpollard to the group EisenLab on 2007-11-25 05:46:43 as *** along with 2 people bpb jmeppley
  • Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes
    Genome Res. (7 November 2007), gr.7105007.
    by Matthew D Rasmussen, Manolis Kellis
    posted to drosophila method phylogeny prediction yeast by dpollard to the group EisenLab on 2007-11-21 02:56:16 as read along with 2 people stajich caseybrown
  • Dynamics and function of intron sequences of the wingless gene during the evolution of the Drosophila genus.
    Evol Dev, Vol. 6, No. 5. (t 2004), pp. 325-335.
    by J Costas, PS Pereira, CP Vieira, S Pinho, J Vieira, F Casares
    posted to cis_regulatory_elements drosophila expression_divergence expression_pattern turnover by dpollard to the group EisenLab on 2007-11-21 01:23:45 as read along with 1 group cis-regulatory-evolution
  • Turnover of binding sites for transcription factors involved in early Drosophila development.
    Gene, Vol. 310 (22 May 2003), pp. 215-220.
    by J Costas, F Casares, J Vieira
    posted to binding_site cis_regulatory_elements drosophila turnover by dpollard to the group EisenLab on 2007-11-21 01:22:24 as read along with 1 person and 1 group cisevol cis-regulatory-evolution
  • Natural selection on protein-coding genes in the human genome
    Nature, Vol. 437, No. 7062., pp. 1153-1157.
    by Carlos D Bustamante, Adi Fledel-Alon, Scott Williamson, Rasmus Nielsen, Melissa T Hubisz, Stephen Glanowski, David M Tanenbaum, Thomas J White, John J Sninsky, Ryan D Hernandez, Daniel Civello, Mark D Adams, Michele Cargill, Andrew G Clark
    posted to gene human population_genetics test_for_selection by dpollard to the group EisenLab on 2007-11-19 07:34:51 as *** along with 15 people and 4 groups shoshin stevanspringer operon jwortman aprasad dayjm balajis marcius hdopazo djkt JBEgwa01 ramensky Garamonfok iris42 dmc FAB-lab BioinfoCIPF SGU-CIPF Durbin group
  • The cost of inbreeding in Arabidopsis.
    Nature, Vol. 416, No. 6880. (4 April 2002), pp. 531-534.
    by CD Bustamante, R Nielsen, SA Sawyer, KM Olsen, MD Purugganan, DL Hartl
    posted to method population_genetics test_for_selection by dpollard to the group EisenLab on 2007-11-19 07:32:25 as *** along with 1 person djkt
  • Polymorphism and divergence for island-model species.
    Genetics, Vol. 163, No. 1. (January 2003), pp. 411-420.
    by J Wakeley
    posted to population_genetics population_structure test_for_selection by dpollard to the group EisenLab on 2007-11-19 02:46:23 as **
  • Unmasking Activation of the Zygotic Genome Using Chromosomal Deletions in the Drosophila Embryo
    PLoS Biology, Vol. 5, No. 5. (1 May 2007), e117.
    by Stefano De Renzis, Olivier Elemento, Saeed Tavazoie, Eric F Wieschaus
    posted to drosophila eisen_journal_club embryo gene_expression matt_presented round_robin by dpollard to the group EisenLab on 2007-11-17 00:09:40 as ** along with 1 person and 1 group wrowell Cline_lab
  • Global analysis of patterns of gene expression during Drosophila embryogenesis
    Genome Biology, Vol. 8 (23 July 2007), R145.
    by Pavel Tomancak, Benjamin P Berman, Amy Beaton, Richard Weiszmann, Elaine Kwan, Volker Hartenstein, Susan E Celniker, Gerald M Rubin
    posted to drosophila eisen_journal_club embryonic_patterning expression_pattern gene_expression matt_presented round_robin by dpollard to the group EisenLab on 2007-11-17 00:04:13 as read along with 1 person caseybrown
  • Reliable prediction of regulator targets using 12 Drosophila genomes.
    Genome Res (7 November 2007)
    by Alexander Stark, Pouya Kheradpour, Sushmita Roy, Manolis Kellis
    posted to cis_regulatory_elements drosophila eisen_journal_club matt_presented prediction round_robin by dpollard to the group EisenLab on 2007-11-17 00:01:35 as *** along with 7 people and 1 group lp2 nklee maximilianh roys caseybrown emptyhb barwil cis-regulatory-evolution
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to cis_regulatory_elements eisen_journal_club grammar rich_presented round_robin by dpollard to the group EisenLab on 2007-11-16 23:56:56 as ** along with 14 people and 1 group tresch Retchless tmmurali austin balicea kengg dbikard margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema SynBioSys
  • Dissecting Timing Variability in Yeast Meiosis
    Cell, Vol. 131, No. 3. (2 November 2007), pp. 544-556.
    by Iftach Nachman, Aviv Regev, Sharad Ramanathan
    posted to eisen_journal_club lenny_presented round_robin by dpollard to the group EisenLab on 2007-11-16 23:55:04 as ** along with 2 people balabu margaritis
  • MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216.
    by Saurabh Sinha, Xin He
    posted to alignment alignment_accuracy binding_site_alignment brant_presented cis_regulatory_elements eisen_journal_club method round_robin by dpollard to the group EisenLab on 2007-11-16 23:53:34 as **** along with 7 people and 1 group ana cjeans zwang maximilianh hpaces Ema uwe cis-regulatory-evolution
  • Contamination of the genome by very slightly deleterious mutations: why have we not died 100 times over?
    J Theor Biol, Vol. 175, No. 4. (21 August 1995), pp. 583-594.
    by AS Kondrashov
    posted to mutational_load selection slightly_deleterious_mutations by dpollard to the group EisenLab on 2007-11-16 03:45:21 as read
  • The regulatory content of intergenic DNA shapes genome architecture.
    Genome Biol, Vol. 5, No. 4. (2004)
    by CE Nelson, BM Hersh, SB Carroll
    posted to drosophila gene_expression genome_architecture nematode noncoding by dpollard to the group EisenLab on 2007-11-14 21:21:28 as read along with 4 people and 2 groups madhadron elzodw blobbybirdman cisevol cis-regulatory-evolution BergmanLab
  • Principles of Genome Evolution in the Drosophila melanogaster Species Group
    PLoS Biology, Vol. 5, No. 6. (1 June 2007), e152.
    by José M Ranz, Damien Maurin, Yuk S Chan, Marcin von Grotthuss, Ladeana W Hillier, John Roote, Michael Ashburner, Casey M Bergman
    posted to drosophila evolution genome_architecture inversion by dpollard to the group EisenLab on 2007-11-14 21:16:50 as ** along with 4 people operon zwang nosada17 maximilianh
  • Rapid sequence turnover at an intergenic locus in Drosophila.
    Mol Biol Evol, Vol. 21, No. 4. (April 2004), pp. 670-680.
    by ND Singh, DA Petrov
    posted to drosophila genome_architecture genome_size indels noncoding by dpollard to the group EisenLab on 2007-11-14 21:13:48 as read
  • Pseudogene evolution in Drosophila suggests a high rate of DNA loss.
    Mol Biol Evol, Vol. 15, No. 11. (November 1998), pp. 1562-1567.
    by DA Petrov, YC Chao, EC Stephenson, DL Hartl
    posted to drosophila genome_architecture genome_size indels pseudogene by dpollard to the group EisenLab on 2007-11-14 21:12:54 as ** along with 1 person skumagai
  • How intron splicing affects the deletion and insertion profile in Drosophila melanogaster.
    Genetics, Vol. 162, No. 3. (November 2002), pp. 1233-1244.
    by SE Ptak, DA Petrov
    posted to drosophila genome_architecture genome_size indels splicing by dpollard to the group EisenLab on 2007-11-14 21:12:02 as **
  • DNA loss and evolution of genome size in Drosophila.
    Genetica, Vol. 115, No. 1. (May 2002), pp. 81-91.
    by DA Petrov
    posted to drosophila genome_architecture genome_size indels by dpollard to the group EisenLab on 2007-11-14 21:11:15 as ** along with 1 person timflutre
  • Mutational equilibrium model of genome size evolution.
    Theor Popul Biol, Vol. 61, No. 4. (June 2002), pp. 531-544.
    by DA Petrov
    posted to genome_architecture genome_size indels model by dpollard to the group EisenLab on 2007-11-14 21:10:36 as ** along with 3 people operon aprasad timflutre
  • Pseudogene evolution and natural selection for a compact genome.
    J Hered, Vol. 91, No. 3. (n 2000), pp. 221-227.
    by DA Petrov, DL Hartl
    posted to drosophila genome_architecture genome_size indels pseudogene selection by dpollard to the group EisenLab on 2007-11-14 21:01:00 as **
  • Evidence for DNA loss as a determinant of genome size.
    Science, Vol. 287, No. 5455. (11 February 2000), pp. 1060-1062.
    by DA Petrov, TA Sangster, JS Johnston, DL Hartl, KL Shaw
    posted to drosophila genome_architecture genome_size indels insects by dpollard to the group EisenLab on 2007-11-14 20:59:23 as ** along with 1 person and 1 group penka Nie
  • High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups.
    Mol Biol Evol, Vol. 15, No. 3. (March 1998), pp. 293-302.
    by DA Petrov, DL Hartl
    posted to drosophila genome_architecture genome_size indels by dpollard to the group EisenLab on 2007-11-14 20:58:27 as ** along with 1 person skumagai
    • Puoi citare questa pagina come: http://www.citeulike.org/user/indigoviolet/watchlist

    Result page: 1 2 3 4 5 6 7 8 9 10 Next RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.