Registrati | Log in | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

di indigoviolet library [368 articles]

Articoli aggiunti di recente nella biblioteca di indigoviolet .
  • The Making of a Fly: The Genetics of Animal Design
    (15 April 1992)
    by Peter A Lawrence
    posted to no-tag by indigoviolet on 2007-12-15 03:00:50 as ** along with 1 group EisenLab
  • WebLogo: A Sequence Logo Generator
    Genome Res., Vol. 14, No. 6. (1 June 2004), pp. 1188-1190.
    by Gavin E Crooks, Gary Hon, John-Marc Chandonia, Steven E Brenner
    posted to no-tag by indigoviolet on 2007-12-12 15:10:45 as ** along with 4 people and 2 groups analogAI xiaobeizhao sobolevnrm yevishere EisenLab baker-group
  • Sequence logos: a new way to display consensus sequences.
    Nucleic Acids Res, Vol. 18, No. 20. (25 October 1990), pp. 6097-6100.
    by TD Schneider, RM Stephens
    posted to no-tag by indigoviolet on 2007-12-12 15:07:59 as ** along with 2 people and 1 group analogAI yevishere EisenLab
  • Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.
    J Mol Biol, Vol. 193, No. 4. (20 February 1987), pp. 723-750.
    by OG Berg, PH von Hippel
    posted to no-tag by indigoviolet on 2007-12-12 15:05:58 as ** along with 7 people and 2 groups zambujo brant jjray lusk discreteonyxorb cisevol Ema EisenLab cis-regulatory-evolution
  • An overview of the structures of protein-DNA complexes.
    Genome Biol, Vol. 1, No. 1. (2000)
    by NM Luscombe, SE Austin, HM Berman, JM Thornton
    posted to no-tag by indigoviolet on 2007-12-12 14:49:58 as ** along with 4 people and 1 group kaarsinogen medic0747 emptyhb jonsta247 EisenLab
  • Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1747-1749.
    by CM Bergman, JW Carlson, SE Celniker
    posted to no-tag by indigoviolet on 2007-12-12 14:40:40 as ** along with 1 person and 2 groups yas EisenLab T_lab
  • GOstat: find statistically overrepresented Gene Ontologies within a group of genes.
    Bioinformatics, Vol. 20, No. 9. (12 June 2004), pp. 1464-1465.
    by T Beissbarth, TP Speed
    posted to no-tag by indigoviolet on 2007-12-12 14:40:11 as ** along with 5 people and 1 group Yanno miguel RMGraze jdiggans yevishere EisenLab
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to no-tag by indigoviolet on 2007-12-12 14:35:50 as ** along with 27 people and 5 groups CitoJam aalibes miguel dragonrez lfriedl chad_davis yas balajis benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp
  • Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks.
    Mol Biol Evol, Vol. 21, No. 1. (January 2004), pp. 36-44.
    by K Tamura, S Subramanian, S Kumar
    posted to no-tag by indigoviolet on 2007-12-12 14:32:29 as ** along with 1 group EisenLab
  • Gene Recognition Via Spliced Sequence Alignment
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 17. (1996), pp. 9061-9066.
    by Mikhail S Gelfand, Andrey A Mironov, Pavel A Pevzner
    posted to no-tag by indigoviolet on 2007-12-12 14:20:24 as ** along with 1 group EisenLab
  • TRANSFAC: a database on transcription factors and their DNA binding sites.
    Nucleic Acids Res, Vol. 24, No. 1. (1 January 1996), pp. 238-241.
    by E Wingender, P Dietze, H Karas, R Knüppel
    posted to database by indigoviolet on 2007-12-12 14:09:36 as ** along with 2 people and 1 group ea dquest EisenLab
  • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase.
    Science, Vol. 249, No. 4968. (3 August 1990), pp. 505-510.
    by C Tuerk, L Gold
    posted to no-tag by indigoviolet on 2007-12-12 14:09:06 as ** along with 1 person and 1 group leelarcombe EisenLab
  • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    Bioinformatics, Vol. 15, No. 7. (1 July 1999), pp. 563-577.
    by Gz Hertz, Gd Stormo
    posted to algorithm motif by indigoviolet on 2007-12-12 14:01:38 as ** along with 3 people and 1 group tuck dquest lusk EisenLab
  • A computational genomics approach to the identification of gene networks
    Nucl. Acids Res., Vol. 25, No. 18. (15 September 1997), pp. 3594-3604.
    by A Wagner
    posted to motif by indigoviolet on 2007-12-12 11:05:07 as ** along with 1 group EisenLab
  • A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites.
    Nucleic Acids Res, Vol. 34, No. 20. (2006), pp. 5730-5739.
    by BT Naughton, E Fratkin, S Batzoglou, DL Brutlag
    posted to motif by indigoviolet on 2007-12-12 11:00:03 as ** along with 3 people and 1 group xili03 nklee yevishere EisenLab
  • Combining evidence using p-values: application to sequence homology searches.
    Bioinformatics, Vol. 14, No. 1. (1998), pp. 48-54.
    by TL Bailey, M Gribskov
    posted to algorithm by indigoviolet on 2007-12-12 10:57:32 as ** along with 1 group EisenLab
  • Methods and statistics for combining motif match scores.
    J Comput Biol, Vol. 5, No. 2. (1998), pp. 211-221.
    by TL Bailey, M Gribskov
    posted to motif by indigoviolet on 2007-12-12 10:56:53 as ** along with 1 group EisenLab
  • Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency.
    BMC Bioinformatics, Vol. 4 (22 December 2003)
    by AG Nazina, DA Papatsenko
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 09:21:45 as ** along with 1 group EisenLab
  • Detection of cis -element clusters in higher eukaryotic DNA
    Bioinformatics, Vol. 17, No. 10. (1 October 2001), pp. 878-889.
    by Martin C Frith, Ulla Hansen, Zhiping Weng
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 09:15:36 as ** along with 1 group EisenLab
  • Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences
    Nucl. Acids Res., Vol. 30, No. 14. (15 July 2002), pp. 3214-3224.
    by Martin C Frith, John L Spouge, Ulla Hansen, Zhiping Weng
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 09:15:32 as ** along with 1 person and 1 group xili03 EisenLab
  • JASPAR: an open-access database for eukaryotic transcription factor binding profiles.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by A Sandelin, W Alkema, P Engström, WW Wasserman, B Lenhard
    posted to database motif by indigoviolet on 2007-12-12 09:14:43 as ** along with 4 people and 2 groups aalibes jguinney nklee heliopais EisenLab Motif Discovery
  • ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors
    Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 1032-1034.
    by Papatsenko, Dmitri
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 09:12:26 as ** along with 1 person and 1 group jyuh EisenLab
  • Cluster-Buster: finding dense clusters of motifs in DNA sequences
    Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3666-3668.
    by Martin C Frith, Michael C Li, Zhiping Weng
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 09:10:09 as ** along with 1 group EisenLab
  • Decoding human regulatory circuits.
    Genome Res, Vol. 14, No. 10A. (October 2004), pp. 1967-1974.
    by W Thompson, MJ Palumbo, WW Wasserman, JS Liu, CE Lawrence
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 09:09:40 as ** along with 1 person and 1 group chad_davis EisenLab
  • CisModule: de novo discovery of cis-regulatory modules by hierarchical mixture modeling.
    Proc Natl Acad Sci U S A, Vol. 101, No. 33. (17 August 2004), pp. 12114-12119.
    by Q Zhou, WH Wong
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 08:38:23 as ** along with 2 people and 1 group ep161302 dpollard EisenLab
  • De novo cis-regulatory module elicitation for eukaryotic genomes
    PNAS, Vol. 102, No. 20. (17 May 2005), pp. 7079-7084.
    by Mayetri Gupta, Jun S Liu
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 08:37:52 as ** along with 2 people and 1 group tuck lusk EisenLab
  • Modulefinder: a tool for computational discovery of cis regulatory modules.
    Pac Symp Biocomput (2005), pp. 519-530.
    by AA Philippakis, FS He, ML Bulyk
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 07:50:58 as ** along with 1 person and 1 group ccr EisenLab
  • Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by O Johansson, W Alkema, WW Wasserman, J Lagergren
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 07:47:27 as ** along with 1 person and 1 group xili03 EisenLab
  • MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
    BMC Bioinformatics, Vol. 6 (2005)
    by VD Marinescu, IS Kohane, A Riva
    posted to algorithm motif by indigoviolet on 2007-12-12 05:44:21 as ** along with 1 group EisenLab
  • CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by R Sharan, I Ovcharenko, A Ben-Hur, RM Karp
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 05:41:45 as ** along with 1 person and 1 group dquest EisenLab
  • Identification of regulatory regions which confer muscle-specific gene expression
    Journal of Molecular Biology, Vol. 278, No. 1. (24 April 1998), pp. 167-181.
    by Wyeth W Wasserman, James W Fickett
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 05:40:08 as ** along with 1 person and 1 group gpalidwor EisenLab
  • Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2738-2750.
    by YH Grad, FP Roth, MS Halfon, GM Church
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-11 10:22:44 as ** along with 1 person and 1 group maximilianh EisenLab
  • Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models
    Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2031-2037.
    by Wendy S Wong, Rasmus Nielsen
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-11 05:05:47 as ** along with 2 people and 1 group cabbagezs csdhwang EisenLab
  • Searching for statistically significant regulatory modules.
    Bioinformatics, Vol. 19 Suppl 2 (October 2003)
    by TL Bailey, WS Noble
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 13:00:37 as ** along with 2 people and 2 groups xili03 stajich EisenLab Berkeley Mycology
  • Homotypic regulatory clusters in Drosophila.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 579-588.
    by AP Lifanov, VJ Makeev, AG Nazina, DA Papatsenko
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:56:45 as ** along with 1 group EisenLab
  • Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo.
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (22 January 2002), pp. 763-768.
    by M Markstein, P Markstein, V Markstein, MS Levine
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:38:23 as ** along with 1 person and 1 group dpollard EisenLab
  • SCORE: A computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data
    Proceedings of the National Academy of Sciences, Vol. 99, No. 15. (23 July 2002), pp. 9888-9893.
    by Mark Rebeiz, Nick L Reeves, James W Posakony
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:37:56 as ** along with 1 group EisenLab
  • Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2858-2864.
    by Pierstorff, Nora, Bergman, M Casey, Wiehe, Thomas
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:15:18 as ** along with 2 people and 1 group brant emilyhare EisenLab
  • Stubb: a program for discovery and analysis of cis-regulatory modules.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by S Sinha, Y Liang, E Siggia
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:14:38 as ** along with 2 people and 1 group Stew csdhwang EisenLab
  • Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila.
    BMC Bioinformatics, Vol. 5 (9 September 2004)
    by S Sinha, MD Schroeder, U Unnerstall, U Gaul, ED Siggia
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:14:10 as ** along with 1 group EisenLab
  • Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.
    BMC Bioinformatics, Vol. 3 (24 October 2002)
    by N Rajewsky, M Vergassola, U Gaul, ED Siggia
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:13:43 as ** along with 5 people and 1 group ansobol adepace koller Stew csdhwang EisenLab
  • BLAT--the BLAST-like alignment tool.
    Genome Res, Vol. 12, No. 4. (April 2002), pp. 656-664.
    by WJ Kent
    posted to algorithm alignment by indigoviolet on 2007-12-03 20:27:15 as ** along with 18 people and 1 group gpappas talponer operon miguel pcahan1 Ayest mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz inesdesantiago yoanjacquemin EisenLab
  • NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by KD Pruitt, T Tatusova, DR Maglott
    posted to database by indigoviolet on 2007-12-03 18:17:47 as ** along with 4 people and 1 group ninch kuhn jjray incovoma EisenLab
  • DroSpeGe: rapid access database for new Drosophila species genomes.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by DG Gilbert
    posted to database by indigoviolet on 2007-12-03 18:15:01 as ** along with 1 group EisenLab
  • Drosophila melanogaster: a case study of a model genomic sequence and its consequences.
    Genome Res, Vol. 15, No. 12. (December 2005), pp. 1661-1667.
    by M Ashburner, CM Bergman
    posted to annotation review by indigoviolet on 2007-12-03 18:11:52 as ** along with 2 people and 2 groups emilyhare penka EisenLab Nie
  • The FlyBase database of the Drosophila Genome Projects and community literature. The FlyBase Consortium.
    Nucleic Acids Res, Vol. 27, No. 1. (1 January 1999), pp. 85-88.
    by Flybase Consortium
    posted to database by indigoviolet on 2007-12-03 18:10:04 as ** along with 1 person and 1 group CitoJam EisenLab
  • PAML: a program package for phylogenetic analysis by maximum likelihood.
    Comput Appl Biosci, Vol. 13, No. 5. (October 1997), pp. 555-556.
    by Z Yang
    posted to algorithm molecular-evolution by indigoviolet on 2007-12-03 18:07:12 as ** along with 9 people and 3 groups bjorns chrn chad_davis penka BioNica stajich pv usagi-kirin jmjimenez EisenLab Nie Berkeley Mycology
  • T-Coffee: A novel method for fast and accurate multiple sequence alignment.
    J Mol Biol, Vol. 302, No. 1. (8 September 2000), pp. 205-217.
    by C Notredame, DG Higgins, J Heringa
    posted to algorithm alignment by indigoviolet on 2007-12-03 18:04:40 as ** along with 8 people and 1 group miguel dayjm ffranca treangen Haggan siebertm adijr marti EisenLab
  • Whole-genome sequence assembly for mammalian genomes: Arachne 2.
    Genome Res, Vol. 13, No. 1. (January 2003), pp. 91-96.
    by DB Jaffe, J Butler, S Gnerre, E Mauceli, K Lindblad-Toh, JP Mesirov, MC Zody, ES Lander
    posted to algorithm assembly by indigoviolet on 2007-12-03 12:32:59 as ** along with 4 people and 1 group bpb AaronDarling wenhan farhat EisenLab
  • Base-calling of automated sequencer traces using phred. II. Error probabilities.
    Genome Res, Vol. 8, No. 3. (March 1998), pp. 186-194.
    by B Ewing, P Green
    posted to algorithm by indigoviolet on 2007-12-03 12:32:33 as ** along with 2 people and 2 groups balajis giovanni Bioinformatics EisenLab
    • Puoi citare questa pagina come: http://www.citeulike.org/user/indigoviolet

    Result page: 1 2 3 4 5 6 7 8 Next RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.