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di gjuggler library [211 articles]

Articoli aggiunti di recente nella biblioteca di gjuggler .
  • Dynamic complex formation during the yeast cell cycle.
    Science, Vol. 307, No. 5710. (4 February 2005), pp. 724-727.
    by U de Lichtenberg, LJ Jensen, S Brunak, P Bork
    posted to test by gjuggler on 2008-06-24 10:12:35 as ** along with 11 people and 1 group carlk mdimmic chad_davis balajis wnpx koller massivemayhem cjeans arne phoenixzxl larsjuhljensen dIEMoSIRIS
  • The impact of recombination on nucleotide substitutions in the human genome.
    PLoS genetics, Vol. 4, No. 5. (May 2008)
    by L Duret, PF Arndt
    posted to mutation by gjuggler on 2008-06-23 00:08:09 as ** along with 2 people balicea aprasad
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
    posted to goldmanlab by gjuggler on 2008-06-20 13:17:30 as ** along with 14 people and 1 group gulsacan Schmidtc bpb zwang aprasad imtechnology marck ArtemPankin djkt hpaces dinnes chad_davis jago phoenixzxl Khavkin's lab
  • notes Use and misuse of the gene ontology annotations
    Nature reviews. Genetics (13 May 2008)
    by Seung Y Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici
    posted to annotation by gjuggler on 2008-06-19 20:36:54 as ** along with 18 people and 1 group marck capitall realzhang A_Olympia fpattyn cmzmasek djkt renatomilani giovenko tmmurali cabbagesofdoom ptrobajo RamuAnandakrishnan roys carlk mariakmejia aheilbut jyuh logics of knowledge
  • Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.
    Science, Vol. 302, No. 5652. (12 December 2003), pp. 1960-1963.
    by AG Clark, S Glanowski, R Nielsen, PD Thomas, A Kejariwal, MA Todd, DM Tanenbaum, D Civello, F Lu, B Murphy, S Ferriera, G Wang, X Zheng, TJ White, JJ Sninsky, MD Adams, M Cargill
    posted to e-slr by gjuggler on 2008-06-17 16:07:59 as ** along with 4 people and 1 group Ema ejeffery hdopazo djkt BioinfoCIPF
  • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 185-193.
    by BM Bolstad, RA Irizarry, M Astrand, TP Speed
    posted to tss-breadth by gjuggler on 2008-06-17 15:47:40 as ** along with 10 people bertelsen cassj Dax42 pcahan1 chad_davis RMGraze filmsternchen qmwwallace joepickrell ghattem
  • Relating tissue specialisation to the differentiation of expression of singleton and duplicate mouse proteins
    Genome Biology, Vol. 7 (09 October 2006), R89.
    by Shiri Freilich, Tim Massingham, Eric Blanc, Leon Goldovsky, Janet M Thornton
    posted to tss-breadth by gjuggler on 2008-06-17 15:47:21 as **
  • A gene atlas of the mouse and human protein-encoding transcriptomes.
    Proc Natl Acad Sci U S A, Vol. 101, No. 16. (20 April 2004), pp. 6062-6067.
    by AI Su, T Wiltshire, S Batalov, H Lapp, KA Ching, D Block, J Zhang, R Soden, M Hayakawa, G Kreiman, MP Cooke, JR Walker, JB Hogenesch
    posted to tss-breadth by gjuggler on 2008-06-17 14:59:45 as ** along with 12 people and 2 groups ujh dragonrez nickluscombe jeremymiller eukfn usagi-kirin cjeans asu shikin jdiezperezj caseybrown maralena EBI-regulation GeschwindLab
  • Assessing the conservation of mammalian gene expression using high-density exon arrays.
    Mol Biol Evol, Vol. 24, No. 6. (June 2007), pp. 1283-1285.
    by Y Xing, Z Ouyang, K Kapur, MP Scott, WH Wong
    posted to tss-breadth by gjuggler on 2008-06-17 12:56:03 as ** along with 1 person jfr
  • Synonymous Codon Usage in Escherichia coli: Selection for Translational Accuracy
    Molecular Biology and Evolution, Vol. 24, No. 2. (February 2007), pp. 374-381.
    by Stoletzki, Nina, Eyre Walker, Adam
    posted to mutation by gjuggler on 2008-06-16 09:28:48 as ** along with 3 people smbe2008 operon michaelbarton
  • Transition-Transversion Bias Is Not Universal: A Counter Example from Grasshopper Pseudogenes
    PLoS Genet, Vol. 3, No. 2. (2 February 2007), e22.
    by Irene Keller, Douda Bensasson, Richard A Nichols
    posted to mutation by gjuggler on 2008-06-15 10:37:53 as **
  • The distribution of fitness effects of new mutations
    Nature Reviews Genetics, Vol. 8, No. 8., pp. 610-618.
    by Adam E Walker, Peter D Keightley
    posted to mutation by gjuggler on 2008-06-14 21:17:37 as ** along with 2 people and 1 group joepickrell massivemayhem Bioinformatics
  • The Global Circulation of Seasonal Influenza A (H3N2) Viruses
    Science, Vol. 320, No. 5874. (18 April 2008), pp. 340-346.
    by Colin A Russell, Terry C Jones, Ian G Barr, Nancy J Cox, Rebecca J Garten, Vicky Gregory, Ian D Gust, Alan W Hampson, Alan J Hay, Aeron C Hurt, Jan C de Jong, Anne Kelso, Alexander I Klimov, Tsutomu Kageyama, Naomi Komadina, Alan S Lapedes, Yi P Lin, Ana Mosterin, Masatsugu Obuchi, Takato Odagiri, Albert D Osterhaus, Guus F Rimmelzwaan, Michael W Shaw, Eugene Skepner, Klaus Stohr, Masato Tashiro, Ron A Fouchier, Derek J Smith
    posted to general by gjuggler on 2008-06-13 13:07:45 as ** along with 4 people and 2 groups reyez lshaw wsjames jago Oxford Virology Global_health_enterprise_architecture
  • Uncertainty in homology inferences: Assessing and improving genomic sequence alignment
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 298-309.
    by Gerton Lunter, Andrea Rocco, Naila Mimouni, Andreas Heger, Alexandre Caldeira, Jotun Hein
    posted to alignment by gjuggler on 2008-05-29 11:16:00 as ** along with 8 people AaronDarling aprasad brant treangen djkt grahamc dandaman mailund
  • Detecting amino acid sites under positive selection and purifying selection.
    Genetics (16 January 2005)
    by Tim Massingham, Nick Goldman
    posted to goldmanlab by gjuggler on 2008-05-23 11:14:29 as ** along with 4 people and 1 group stevanspringer operon BioNica Natasha FAB-lab
  • Contrasting evolution of expression differences in the testis between species and subspecies of the house mouse
    Genome Res., Vol. 17, No. 1. (1 January 2007), pp. 42-49.
    by Christian Voolstra, Diethard Tautz, Patrick Farbrother, Ludwig Eichinger, Bettina Harr
    posted to 08-smbe by gjuggler on 2008-05-22 17:20:54 as **
  • Regulatory changes underlying expression differences within and between Drosophila species.
    Nat Genet (17 February 2008)
    by Patricia JJ Wittkopp, Belinda KK Haerum, Andrew GG Clark
    posted to 08-smbe by gjuggler on 2008-05-22 17:19:55 as ** along with 3 people brant djkt mimulus_99
  • Evaluating the role of natural selection in the evolution of gene regulation
    Heredity, Vol. aop, No. current.
    by JC Fay, PJ Wittkopp
    posted to 08-smbe by gjuggler on 2008-05-22 17:19:37 as ** along with 4 people and 2 groups dpollard djkt cisevol emptyhb EisenLab cis-regulatory-evolution
  • Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase.
    Genome Biology, Vol. 8 (22 February 2007), R23.
    by Alan M Moses, Jean K Heriche, Richard Durbin
    posted to 08-smbe by gjuggler on 2008-05-22 17:18:02 as ** along with 1 person and 1 group dpollard EisenLab
  • The McDonald-Kreitman Test and Slightly Deleterious Mutations
    Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1007-1015.
    by Jane Charlesworth, Adam E Walker
    posted to mutation by gjuggler on 2008-05-22 17:15:58 as ** along with 4 people and 1 group Stew cabbagesofdoom stajich stevanspringer Berkeley Mycology
  • Differentiated evolutionary rates in alternative exons and the implications for splicing regulation
    BMC Evolutionary Biology, Vol. 6 (22 June 2006), 50.
    by Mireya Plass, Eduardo Eyras
    posted to 08-smbe by gjuggler on 2008-05-22 17:13:15 as **
  • Widespread Evolutionary Conservation of Alternatively Spliced Exons in Caenorhabditis
    Mol Biol Evol, Vol. 25, No. 2. (1 February 2008), pp. 375-382.
    by Manuel Irimia, Jakob L Rukov, David Penny, Jordi G Fernandez, Jeppe Vinther, Scott W Roy
    posted to 08-smbe by gjuggler on 2008-05-22 17:12:13 as **
  • Spliceosomal introns as tools for genomic and evolutionary analysis
    Nucl. Acids Res., Vol. 36, No. 5. (1 March 2008), pp. 1703-1712.
    by Manuel Irimia, Scott W Roy
    posted to 08-smbe by gjuggler on 2008-05-22 17:10:14 as **
  • Intron mis-splicing: no alternative?
    Genome Biology, Vol. 9 (19 February 2008), 208.
    by Scott W Roy, Manuel Irimia
    posted to 08-smbe by gjuggler on 2008-05-22 17:09:44 as **
  • Refined analysis of genetic variability parameters in hepatitis C virus and the ability to predict antiviral treatment response
    Journal of Viral Hepatitis, Vol. 0, No. 0. (0), pp. ???-???.
    by JM Cuevas, Torres M Puente, Jimenez N Hernandez, MA Bracho, Garcia I Robles, F Carnicer, JD Olmo, E Ortega, A Moya, Gonzalez F Candelas
    posted to 08-smbe by gjuggler on 2008-05-22 17:07:35 as **
  • Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila
    Nature, Vol. 445, No. 7123. (4 January 2007), pp. 82-85.
    by Cathy H Liautard, Mark Dorris, Xulio Maside, Steven Macaskill, Daniel L Halligan, Brian Charlesworth, Peter D Keightley
    posted to mutation by gjuggler on 2008-05-22 17:06:28 as ** along with 6 people and 1 group operon dpollard jri stajich ramensky lusk EisenLab
  • Mutation Accumulation Studies in Evolutionary Genetics
    Annual Review of Ecology, Evolution, and Systematics, Vol. 39, No. 1. (2008)
    by Peter D Keightley
    posted to 08-smbe by gjuggler on 2008-05-22 17:05:57 as **
  • Evolution of Multicellularity (Choanflagelates)
    Annual Review of Genetics, Vol. 42, No. 1. (2008)
    by Antonis Rokas
    posted to 08-smbe by gjuggler on 2008-05-22 17:04:56 as **
  • GENOMICS: Lining Up to Avoid Bias
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 416-417.
    by Antonis Rokas
    posted to 08-smbe by gjuggler on 2008-05-22 17:04:19 as ** along with 6 people operon dayjm cjeans lilou dandaman renatomilani
  • The Inverse Relationship Between Evolutionary Rate and Age of Mammalian Genes Is an Artifact of Increased Genetic Distance with Rate of Evolution and Time of Divergence
    Molecular Biology and Evolution, Vol. 23, No. 1. (January 2006), pp. 1-3.
    by Eran Elhaik, Niv Sabath
    posted to 08-smbe by gjuggler on 2008-05-22 17:02:47 as ** along with 1 person akifumi
  • Global analysis of alternative splicing differences between humans and chimpanzees
    Genes Dev. (31 October 2007), gad.1606907.
    by John A Calarco, Yi Xing, Mario Caceres, Joseph P Calarco, Xinshu Xiao, Qun Pan, Christopher Lee, Todd M Preuss, Benjamin J Blencowe
    posted to 08-smbe by gjuggler on 2008-05-22 17:01:29 as ** along with 1 person saru
  • PhylomeDB: a database for genome-wide collections of gene phylogenies.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008)
    by Huerta J Cepas, A Bueno, J Dopazo, T Gabaldón
    posted to 08-smbe by gjuggler on 2008-05-22 16:59:35 as **
  • A genome-wide approach to identifying novel-imprinted genes.
    Hum Genet, Vol. 122, No. 6. (January 2008), pp. 625-634.
    by KS Pollard, D Serre, X Wang, H Tao, E Grundberg, TJ Hudson, AG Clark, K Frazer
    posted to 08-smbe by gjuggler on 2008-05-22 16:58:08 as ** along with 2 people and 1 group dpollard nolodie RockmanLab
  • Deciphering Human Immunodeficiency Virus Type 1 Transmission and Early Envelope Diversification by Single-Genome Amplification and Sequencing
    J. Virol., Vol. 82, No. 8. (15 April 2008), pp. 3952-3970.
    by Jesus, Elizabeth Bailes, Kimmy T Pham, Maria G Salazar, Brad M Guffey, Brandon F Keele, Cynthia A Derdeyn, Paul Farmer, Eric Hunter, Susan Allen, Olivier Manigart, Joseph Mulenga, Jeffrey A Anderson, Ronald Swanstrom, Barton F Haynes, Gayathri S Athreya, Bette T Korber, Paul M Sharp, George M Shaw, Beatrice H Hahn
    posted to 08-smbe by gjuggler on 2008-05-22 16:55:37 as **
  • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    Nature Genetics, Vol. 39, No. 4. (04 March 2007), pp. 457-466.
    by Michael Weber, Ines Hellmann, Michael B Stadler, Liliana Ramos, Svante Pääbo, Michael Rebhan, Dirk Schübeler
    posted to 08-smbe by gjuggler on 2008-05-22 16:22:55 as ** along with 4 people rschulz vmsr epigenetics bioyang
  • A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.
    Genomics, Vol. 91, No. 3. (March 2008), pp. 281-288.
    by GJ Faulkner, AR Forrest, AM Chalk, K Schroder, Y Hayashizaki, P Carninci, DA Hume, SM Grimmond
    posted to tss by gjuggler on 2008-05-16 15:18:34 as **
  • Discovering sequence motifs with arbitrary insertions and deletions.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by MC Frith, NF Saunders, B Kobe, TL Bailey
    posted to indels by gjuggler on 2008-05-12 11:19:30 as ** along with 5 people Ema dquest Stew neils cabbagesofdoom
  • Genome analysis of the platypus reveals unique signatures of evolution
    Nature, Vol. 453, No. 7192. (May 2008), pp. 175-183.
    posted to general by gjuggler on 2008-05-08 10:01:16 as ** along with 9 people pbull Tominator ealloza hpaces lp2 natstreet cabbagesofdoom fhsantanna neils
  • Combining Statistical Alignment and Phylogenetic Footprinting to Detect Regulatory Elements.
    Bioinformatics (18 March 2008)
    by R Satija, L Pachter, J Hein
    posted to annotation alignment by gjuggler on 2008-05-08 09:53:45 as ** along with 4 people Stew Ema maximilianh eckart_bindewald
  • The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
    Science (1 May 2008), 1158441.
    by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder
    posted to gersteinlab by gjuggler on 2008-05-08 09:52:39 as ** along with 7 people and 1 group semrich biomcgary djkt chad_davis Retchless caseybrown stajich Berkeley Mycology
  • Designating eukaryotic orthology via processed transcription units.
    Nucleic acids research (29 April 2008)
    by Meng, Wen, Chun, Lan, Wen
    posted to splicing by gjuggler on 2008-05-02 09:32:34 as **
  • High Guanine and Cytosine Content Increases mRNA Levels in Mammalian Cells
    PLoS Biology, Vol. 4, No. 6. (1 June 2006)
    by Grzegorz Kudla, Leszek Lipinski, Fanny Caffin, Aleksandra Helwak, Maciej Zylicz
    posted to isochores by gjuggler on 2008-05-01 14:30:45 as ** along with 2 people and 1 group cmm djkt FAB-lab
  • The evolutionary advantage of recombination.
    Genetics, Vol. 78, No. 2. (October 1974), pp. 737-756.
    by J Felsenstein
    posted to dupldiv by gjuggler on 2008-05-01 13:29:45 as ** along with 2 people timflutre usagi-kirin
  • THE EVOLUTIONARY ADVANTAGE OF RECOMBINATION. II. INDIVIDUAL SELECTION FOR RECOMBINATION
    Genetics, Vol. 83, No. 4. (1 August 1976), pp. 845-859.
    by Joseph Felsenstein, Shozo Yokoyama
    posted to dupldiv by gjuggler on 2008-05-01 13:28:50 as **
  • Positive selection drives a correlation between nonsynonymous/ synonymous divergence and functional divergence.
    Bioinformatics (Oxford, England) (28 April 2008)
    by Jacob AA Tennessen
    posted to mutsel dupldiv by gjuggler on 2008-05-01 11:55:00 as ** along with 3 people APRegier djkt Ema
  • Phylogenetic distribution of large-scale genome patchiness
    BMC Evolutionary Biology, Vol. 8 (11 April 2008), 107.
    by Jose L Oliver, Pedro B Galvan, Michael Hackenberg, Pedro Carpena
    posted to isochores by gjuggler on 2008-05-01 11:05:44 as ** along with 1 person wisdom_love
  • Low Rates of Expression Profile Divergence in Highly Expressed Genes and Tissue-Specific Genes During Mammalian Evolution
    Molecular Biology and Evolution, Vol. 23, No. 6. (June 2006), pp. 1119-1128.
    by Ben Y Liao, Jianzhi Zhang
    posted to tss-breadth by gjuggler on 2008-04-30 16:31:19 as ** along with 1 person and 2 groups bsmagic Bioinformatics bioinplant
  • Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
    Nature (10 April 2008)
    by Toshiaki Watanabe, Yasushi Totoki, Atsushi Toyoda, Masahiro Kaneda, Satomi K Miyagawa, Yayoi Obata, Hatsune Chiba, Yuji Kohara, Tomohiro Kono, Toru Nakano, Azim M Surani, Yoshiyuki Sakaki, Hiroyuki Sasaki
    posted to pseudogenes by gjuggler on 2008-04-30 10:02:34 as ** along with 2 people eskay rschulz
  • Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
    Nature (10 April 2008)
    by Oliver H Tam, Alexei A Aravin, Paula Stein, Angelique Girard, Elizabeth P Murchison, Sihem Cheloufi, Emily Hodges, Martin Anger, Ravi Sachidanandam, Richard M Schultz, Gregory J Hannon
    posted to pseudogenes by gjuggler on 2008-04-20 17:58:51 as ** along with 2 people eskay rschulz
  • Multiple transcription start sites for FOXP2 with varying cellular specificities
    Gene, Vol. In Press, Accepted Manuscript
    by Diane I Schroeder, Richard M Myers
    posted to tss by gjuggler on 2008-04-15 18:37:48 as **
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