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di fpattyn library [107 articles]

Articoli aggiunti di recente nella biblioteca di fpattyn .
  • Resolving Individuals Contributing Trace Amounts of DNA to Highly Complex Mixtures Using High-Density SNP Genotyping Microarrays
    PLoS Genet, Vol. 4, No. 8. (2008), e1000167.
    by Nils Homer, Szabolcs Szelinger, Margot Redman, David Duggan, Waibhav Tembe, Jill Muehling, John V Pearson, Dietrich A Stephan, Stanley F Nelson, David W Craig
    posted to dna forensics genotype individual mixture snp by fpattyn on 2008-09-01 08:09:08 as ** along with 3 people jasonbobe djkt rs
  • Max-independent functions of Myc in Drosophila melanogaster
    Nature Genetics, Vol. 40, No. 9. (01 August 2008), pp. 1084-1091.
    by Dominik Steiger, Michael Furrer, Daniela Schwinkendorf, Peter Gallant
    posted to drosophila max myc by fpattyn on 2008-08-29 10:16:59 as ** along with 1 group Neuroblastoma
  • Preferential regulation of duplicated genes by microRNAs in mammals
    Genome Biology, Vol. 9, No. 8. (2008)
    by Jingjing Li, Gabriel Musso, Zhaolei Zhang
    posted to duplicate gene mirna regulation by fpattyn on 2008-08-27 14:44:47 as ** along with 1 person pengchy
  • Nuclear MYC protein overexpression is an early alteration in human prostate carcinogenesis
    Modern Pathology, Vol. aop, No. current.
    by Bora Gurel, Tsuyoshi Iwata, Cheryl M Koh, Robert B Jenkins, Fusheng Lan, Chi Van Dang, Jessica L Hicks, James Morgan, Toby C Cornish, Siobhan Sutcliffe, William B Isaacs, Jun Luo, Angelo M De Marzo
    posted to cancer early marker myc prostate by fpattyn on 2008-08-26 15:47:40 as ** along with 1 group Neuroblastoma
  • Modelling Myc inhibition as a cancer therapy : Article : Nature
    posted to cancer inhibition myc therapy by fpattyn on 2008-08-21 10:10:42 as ** along with 1 group Neuroblastoma
  • The mechanism of micro-RNA-mediated translation repression is determined by the promoter of the target gene
    Proceedings of the National Academy of Sciences (25 June 2008), 0800650105.
    by Yi W Kong, Ian G Cannell, Cornelia H de Moor, Kirsti Hill, Paul G Garside, Tiffany L Hamilton, Hedda A Meijer, Helen C Dobbyn, Mark Stoneley, Keith A Spriggs, Anne E Willis, Martin Bushell
    posted to gene mirna promoter repression target translational by fpattyn on 2008-08-06 09:29:10 as ** along with 2 people bootsy maralena
  • Circulating microRNAs as stable blood-based markers for cancer detection.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 30. (29 July 2008), pp. 10513-10518.
    by PS Mitchell, RK Parkin, EM Kroh, BR Fritz, SK Wyman, EL Pogosova-Agadjanyan, A Peterson, J Noteboom, KC O'Briant, A Allen, DW Lin, N Urban, CW Drescher, BS Knudsen, DL Stirewalt, R Gentleman, RL Vessella, PS Nelson, DB Martin, M Tewari
    posted to blood cancer markers mirna prostate by fpattyn on 2008-08-06 09:23:17 as ** along with 1 person calvin
  • p73alpha isoforms drive opposite transcriptional and post-transcriptional regulation of MYCN expression in neuroblastoma cells
    Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4222-4232.
    by Emilie Horvilleur, Matthieu Bauer, David Goldschneider, Xenia Mergui, de La, Jean Benard, Setha Douc-Rasy, David Cappellen
    posted to mycn neuroblastoma p73 post-transcriptional regulation tp73 transcriptional by fpattyn on 2008-07-23 16:15:40 as ** along with 1 group Neuroblastoma
  • Low nucleosome occupancy is encoded around functional human transcription factor binding sites
    BMC Genomics, Vol. 9 (15 July 2008), 332.
    by Floris Daenen, Frans van Roy, Pieter J De Bleser
    posted to binding factor nucleosome sites transcription by fpattyn on 2008-07-16 09:04:14 as **
  • Calling on a million minds for community annotation in WikiProteins
    Genome Biology, Vol. 9, No. 5. (2008)
    by Barend Mons, Michael Ashburner, Christine Chichester, Erik van Mulligen, Marc Weeber, Johan den Dunnen, Gert J van Ommen, Mark Musen, Matthew Cockerill, Henning Hermjakob, Albert Mons, Abel Packer, Roberto Pacheco, Suzanna Lewis, Alfred Berkeley, William Melton, Nickolas Barris, Jimmy Wales, Gerard Meijssen, Erik Moeller, Peter Roes, Katy Borner, Amos Bairoch
    posted to wiki wikiproteins by fpattyn on 2008-07-04 16:47:48 as ** along with 16 people and 1 group yas AlexanderPico thomaskelder dullhunk tharris renatomilani neils chad_davis sjc Katje jamselem ChrisEvelo carlk jyuh xingxu rholz microbiology_nijmegen
  • The HECT-domain ubiquitin ligase Huwe1 controls neural differentiation and proliferation by destabilizing the N-Myc oncoprotein
    Nature Cell Biology, Vol. 10, No. 6. (18 May 2008), pp. 643-653.
    by Xudong Zhao, Julian I Heng, Daniele Guardavaccaro, Richeng Jiang, Michele Pagano, Francois Guillemot, Antonio Iavarone, Anna Lasorella
    posted to differentiation mycn neural proliferation by fpattyn on 2008-07-02 13:36:38 as ** along with 1 person and 1 group tsaichen Neuroblastoma
  • The B Cell Antigen Receptor and Overexpression of MYC Can Cooperate in the Genesis of B Cell Lymphomas
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e152.
    by Yosef Refaeli, Ryan M Young, Brian C Turner, Jennifer Duda, Kenneth A Field, Michael J Bishop
    posted to b cell lymphoma myc by fpattyn on 2008-06-24 22:28:01 as **
  • LINE-1 methylation status of endogenous DNA double-strand breaks
    Nucl. Acids Res., Vol. 36, No. 11. (1 June 2008), pp. 3667-3675.
    by Wichai Pornthanakasem, Narisorn Kongruttanachok, Chutipa Phuangphairoj, Chotika Suyarnsestakorn, Taweap Sanghangthum, Sornjarod Oonsiri, Wanpen Ponyeam, Thatchawan Thanasupawat, Oranart Matangkasombut, Apiwat Mutirangura
    posted to no-tag by fpattyn on 2008-06-24 16:53:18 as ** along with 1 group Neuroblastoma
  • High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis
    Nucl. Acids Res., Vol. 36, No. 11. (1 June 2008), e63.
    by Somdeb Mitra, Inna V Shcherbakova, Russ B Altman, Michael Brenowitz, Alain Laederach
    posted to analysis footprinting by fpattyn on 2008-06-24 16:28:01 as **
  • DNA conformations and their sequence preferences
    Nucl. Acids Res. (13 May 2008), gkn260.
    by Daniel Svozil, Jan Kalina, Marek Omelka, Bohdan Schneider
    posted to conformation dna by fpattyn on 2008-06-24 16:22:06 as ** along with 4 people and 2 groups aalibes TOchi jmrivort reyez G-quadruplex Neuroblastoma
  • A simple algorithm for quantifying DNA methylation levels on multiple independent CpG sites in bisulfite genomic sequencing electropherograms
    Nucl. Acids Res., Vol. 36, No. 11. (1 June 2008), e64.
    by Tatiana I Leakey, Jerzy Zielinski, Rachel N Siegfried, Eric R Siegel, Chun-Yang Fan, Craig A Cooney
    posted to dna epigenetics methylation sequencing by fpattyn on 2008-06-24 16:16:23 as **
  • Ras oncogenes: split personalities
    Nat Rev Mol Cell Biol, Vol. 9, No. 7. (July 2008), pp. 517-531.
    by Antoine E Karnoub, Robert A Weinberg
    posted to oncogenes ras review by fpattyn on 2008-06-23 18:04:00 as ** along with 1 person barry
  • A gene regulatory network orchestrates neural crest formation
    Nat Rev Mol Cell Biol, Vol. 9, No. 7. (July 2008), pp. 557-568.
    by Tatjana Sauka-Spengler, Marianne Bronner-Fraser
    posted to crest gene network neural by fpattyn on 2008-06-23 18:02:16 as ** along with 1 person alhufton
  • Cathepsin D Protects Human Neuroblastoma Cells from Doxorubicin-Induced Cell Death.
    Carcinogenesis (19 June 2008)
    by Vitalia Sagulenko, Daniel Muth, Evgeny Sagulenko, Tobias Paffhausen, Manfred Schwab, Frank Westermann
    posted to chip ctsd doxorubicin mycn neuroblastoma by fpattyn on 2008-06-22 21:30:32 as ** along with 1 group Neuroblastoma
  • Synergistic response to oncogenic mutations defines gene class critical to cancer phenotype
    Nature (25 May 2008)
    by Helene R Mcmurray, Erik R Sampson, George Compitello, Conan Kinsey, Laurel Newman, Bradley Smith, Shaw-Ree Chen, Lev Klebanov, Peter Salzman, Andrei Yakovlev, Hartmut Land
    posted to cancer mutations oncogenes p53 ras by fpattyn on 2008-06-19 07:57:05 as **
  • Retinoic acid in development: towards an integrated view
    Nat Rev Genet, Vol. 9, No. 7. (July 2008), pp. 541-553.
    by Karen Niederreither, Pascal Dolle
    posted to acid retinoic by fpattyn on 2008-06-19 07:37:34 as ** along with 3 people cmzmasek ajaymalik dchughes
  • Use and misuse of the gene ontology annotations.
    Nature reviews. Genetics (13 May 2008)
    by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici
    posted to gene misuse ontology by fpattyn on 2008-06-19 07:17:54 as ** along with 20 people and 2 groups djkt jyuh aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck rvosa bpcusack logics of knowledge FAB-lab
  • Genome-wide assessment of coding and non-coding conserved sequence tags in human and mouse genomes
    BMC Genomics, Vol. 9 (11 June 2008), 277.
    by Flavio Mignone, Anna Anselmo, Giacinto Donvito, Giorgio P Maggi, Giorgio Grillo, Graziano Pesole
    posted to coding conservation conserved genome human mouse non-coding sequence tags by fpattyn on 2008-06-19 07:02:07 as **
  • Anni 2.0: a multipurpose text-mining tool for the life sciences
    Genome Biology, Vol. 9, No. 6. (2008)
    by Rob Jelier, Martijn Schuemie, Antoine Veldhoven, Lambert Dorssers, Guido Jenster, Jan Kors
    posted to mining software text by fpattyn on 2008-06-19 06:49:58 as ** along with 5 people barriot reyez dullhunk Gaetan jyuh
  • EagleView: a genome assembly viewer for next-generation sequencing technologies.
    Genome research (11 June 2008)
    by Weichun Huang, Gabor T T Marth
    posted to nextgen sequencing software viewer by fpattyn on 2008-06-19 06:16:13 as ** along with 6 people balicea bcondon APRegier Neeperando GustavoLacerda jyuh
  • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    Genome Res. (11 June 2008), gr.079558.108.
    by John Marioni, Cristopher Mason, Shrikant Mane, Matthew Stephens, Yoav Gilad
    posted to expression gene nextgen sequencing by fpattyn on 2008-06-19 06:15:13 as ** along with 15 people and 1 group caseybrown Ema balicea vega lusk semrich vmarshal stajich giovanni ela503 Stew jyuh kengg shurjo GustavoLacerda Berkeley Mycology
  • Two strategies for gene regulation by promoter nucleosomes
    Genome Res. (30 April 2008), gr.076059.108.
    by Itay Tirosh, Naama Barkai
    posted to gene nucleosome promoter regulation transcription by fpattyn on 2008-06-19 06:13:26 as ** along with 9 people emptyhb vega nklee roys djkt dchughes aalibes siebert inesdesantiago
  • Inferring causal relationships among different histone modifications and gene expression
    Genome Res. (18 June 2008), gr.073080.107.
    by Hong Yu, Shanshan Zhu, Bing Zhou, Huiling Xue, Jing-Dong J Han
    posted to chip expression gene histone nextgen sequencing by fpattyn on 2008-06-19 05:54:20 as ** along with 6 people rschulz ptrobajo bootsy bcondon sharmapank klo
  • Oesophageal adenocarcinoma is associated with a deregulation in the MYC/MAX/MAD network
    British Journal of Cancer, Vol. aop, No. current. (20 May 2008)
    by JKR Boult, P Taniere, MT Hallissey, MJ Campbell, C Tselepis
    posted to adenocarcinoma mad max myc oesophageal by fpattyn on 2008-06-14 08:51:43 as **
  • Complex molecular mechanisms cooperate to mediate histone deacetylase inhibitors anti-tumour activity in neuroblastoma cells
    Molecular Cancer, Vol. 7 (12 June 2008), 55.
    by Annick Muhlethaler-Mottet, Roland Meier, Marjorie Flahaut, Katia B Bourloud, Katya Nardou, Jean-Marc Joseph, Nicole Gross
    posted to deacytelase histone inhibitors neuroblastoma by fpattyn on 2008-06-14 06:47:28 as ** along with 1 group Neuroblastoma
  • The prevalence of folate-remedial MTHFR enzyme variants in humans
    Proceedings of the National Academy of Sciences, Vol. 105, No. 23. (10 June 2008), pp. 8055-8060.
    by Nicholas J Marini, Jennifer Gin, Janet Ziegle, Kathryn H Keho, David Ginzinger, Dennis A Gilbert, Jasper Rine
    posted to folate human mthfr population variant by fpattyn on 2008-06-12 04:38:29 as **
  • Functional classification analysis of somatically mutated genes in human breast and colorectal cancers.
    Genomics (21 April 2008)
    by Thomas W W Chittenden, Eleanor A A Howe, Aedin C C Culhane, Razvan Sultana, Jennifer M M Taylor, Chris Holmes, John Quackenbush
    posted to classificiation gene ontology by fpattyn on 2008-06-06 15:37:17 as ** along with 1 person capitall
  • Zbtb4 represses transcription of P21CIP1 and controls the cellular response to p53 activation
    The EMBO Journal, Vol. aop, No. current. (01 May 2008)
    by Axel Weber, Judith Marquardt, David Elzi, Nicole Forster, Sven Starke, Andre Glaum, Daisuke Yamada, Pierre-Antoine Defossez, Jeffrey Delrow, Robert N Eisenman, Holger Christiansen, Martin Eilers
    posted to miz1 p53 zbtb4 by fpattyn on 2008-06-05 14:12:19 as ** along with 1 group Neuroblastoma
  • A novel universal real-time PCR system using the attached universal duplex probes for quantitative analysis of nucleic acids
    BMC Molecular Biology, Vol. 9 (04 June 2008), 54.
    by Litao Yang, Wanqi Liang, Lingxi Jiang, Wenquan Li, Wei Cao, Zoe A Wilson, Dabing Zhang
    posted to pcr primer quantitative real-time by fpattyn on 2008-06-05 07:05:33 as ** along with 1 person jyuh
  • Molecular basis of antifolate resistance
    Cancer and Metastasis Reviews, Vol. 26, No. 1. (March 2007), pp. 153-181.
    by Assaraf, Yehuda
    posted to compound dfhr folate by fpattyn on 2008-06-04 10:14:24 as ** along with 1 group Neuroblastoma
  • Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets.
    Genome research (14 April 2008)
    by Chaim Linhart, Yonit Halperin, Ron Shamir
    posted to analysis factor mirna motif transcription by fpattyn on 2008-06-03 23:24:25 as ** along with 6 people and 1 group ealloza idonaldson maralena isimpson tmmurali maximilianh BergmanLab
  • Myc-Mediated Transcriptional Repression by Recruitment of Histone Deacetylase
    Cancer Res, Vol. 68, No. 10. (15 May 2008), pp. 3624-3629.
    by John F Kurland, William P Tansey
    posted to deacetylase genes histone myc repression target transcription transcriptional by fpattyn on 2008-05-15 22:10:19 as **
  • In neuroblastic tumours, Schwann cells do not harbour the genetic alterations of neuroblasts but may nevertheless share the same clonal origin
    Oncogene, Vol. aop, No. current.
    by F Bourdeaut, A Ribeiro, R Paris, G Pierron, J Couturier, M Peuchmaur, O Delattre
    posted to neuroblast neuroblastoma by fpattyn on 2008-05-08 15:52:31 as ** along with 1 group Neuroblastoma
  • The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site
    Nucl. Acids Res. (26 March 2008), gkn137.
    by Kannan Tharakaraman, Olivier Bodenreider, David Landsman, John L Spouge, Leonardo Marino-Ramirez
    posted to binding factor motif site transcription by fpattyn on 2008-05-06 14:22:26 as ** along with 3 people maximilianh idonaldson inesdesantiago
  • DNA-dependent protein kinase catalytic subunit modulates the stability of c-Myc oncoprotein
    Molecular Cancer, Vol. 7 (22 April 2008), 32.
    by Jing An, Dong-Yan Yang, Qin-Zhi Xu, Shi-Meng Zhang, Yan-Ying Huo, Zeng-Fu Shang, Yu Wang, De-Chang Wu, Ping-Kun Zhou
    posted to myc mycn protein stability by fpattyn on 2008-05-04 21:58:46 as ** along with 1 person and 1 group tibbitts Neuroblastoma
  • Posttranscriptional Gene Regulation by Spatial Rearrangement of the 3′ Untranslated Region
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e92.
    by Andrea B Eberle, Lukas Stalder, Hansruedi Mathys, Rodolfo Z Orozco, Oliver Mühlemann
    posted to gene regulation by fpattyn on 2008-04-29 22:25:45 as **
  • Global identification of Myc target genes reveals its direct role in mitochondrial biogenesis and its E-box usage in vivo.
    PLoS ONE, Vol. 3, No. 3. (2008)
    by J Kim, JH Lee, VR Iyer
    posted to analysis chip ebox myc promoter by fpattyn on 2008-04-28 15:41:57 as ** along with 1 group Neuroblastoma
  • New miRNAs cloned from neuroblastoma
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Elena Afanasyeva, Agnes H Wagenblatt, Karl H Glatting, Frank Westermann
    posted to expression gene mirna neuroblastoma by fpattyn on 2008-04-06 19:27:03 as ** along with 1 person and 2 groups heliopais microRNA Neuroblastoma
  • DATFAP: A Database of Primers and Homology Alignments for Transcription Factors from 13 Plant Species
    BMC Genomics, Vol. 9 (25 March 2008), 140.
    by Jakob Fredslund
    posted to database pcr primer real-time rtprimerdb by fpattyn on 2008-03-26 06:29:06 as **
  • Two different classes of co-occurring motif-pairs found by a novel visualization method in human promoter regions
    BMC Genomics, Vol. 9 (01 March 2008), 112.
    by Katsuhiko Murakami, Tadashi Imanishi, Takashi Gojobori, Kenta Nakai
    posted to analysis finding motif mycn promoter by fpattyn on 2008-03-12 09:42:43 as **
  • Ranking analysis of F-atatistics for microarray data
    BMC Bioinformatics, Vol. 9 (06 March 2008), 142.
    by Yuan-De Tan, Myriam Fornage, Hongyan Xu
    posted to expression gene microarrays statistics by fpattyn on 2008-03-12 09:39:58 as ** along with 2 people jyuh jfr
  • Discovering gene annotations in biomedical text databases
    BMC Bioinformatics, Vol. 9 (06 March 2008), 143.
    by Ali Cakmak, Gultekin Ozsoyoglu
    posted to annotation gene mining text by fpattyn on 2008-03-12 09:39:19 as ** along with 3 people bootsy akastrin jyuh
  • Effects of folic acid deficiency and MTHFR C677T polymorphism on spontaneous and radiation-induced micronuclei in human lymphocytes
    Mutagenesis, Vol. 21, No. 5. (September 2006), pp. 327-333.
    by Leopardi, Paola, Marcon, Francesca, Caiola, Stefania, Cafolla, Arturo, Siniscalchi, Ester, Zijno, Andrea, Crebelli, Riccardo
    posted to folate mthfr pathway by fpattyn on 2008-03-11 14:51:29 as **
  • Homocysteine metabolism and various consequences of folate deficiency.
    J Alzheimers Dis, Vol. 9, No. 4. (August 2006), pp. 421-427.
    by F Tchantchou
    posted to folate pathway by fpattyn on 2008-03-11 14:43:36 as **
  • Simultaneous identification of long similar substrings in large sets of sequences.
    BMC Bioinformatics, Vol. 8 Suppl 5 (2007)
    by J Kleffe, F Möller, B Wittig
    posted to alignment sequence by fpattyn on 2008-02-28 17:48:38 as **
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