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di dpollard evolution [64 articles]

Articoli aggiunti di recente alla biblioteca di dpollard classificati sotto il tag evolution. You can also see everyone's evolution.
  • Principles of Genome Evolution in the Drosophila melanogaster Species Group
    PLoS Biology, Vol. 5, No. 6. (1 June 2007), e152.
    by José M Ranz, Damien Maurin, Yuk S Chan, Marcin von Grotthuss, Ladeana W Hillier, John Roote, Michael Ashburner, Casey M Bergman
    posted to drosophila evolution genome_architecture inversion by dpollard on 2007-11-14 21:16:50 as ** along with 5 people and 1 group braneyboo operon zwang nosada17 maximilianh EisenLab
  • Colloquium Papers: Emerging principles of regulatory evolution.
    Proc Natl Acad Sci U S A, Vol. 104 Suppl 1 (15 May 2007), pp. 8605-8612.
    by B Prud'homme, N Gompel, SB Carroll
    posted to cis_regulatory_elements evolution regulatory_evolution review by dpollard on 2007-06-14 23:47:29 as *** along with 3 people and 2 groups blobbybirdman cisevol emptyhb EisenLab cis-regulatory-evolution
  • Evolution of the dorsal-ventral patterning network in the mosquito, Anopheles gambiae.
    Development, Vol. 134, No. 13. (July 2007), pp. 2415-2424.
    by Y Goltsev, N Fuse, M Frasch, RP Zinzen, G Lanzaro, M Levine
    posted to development embryonic_patterning evo_devo evolution insect by dpollard on 2007-06-13 21:06:18 as ** along with 2 groups EisenLab cis-regulatory-evolution
  • Permissive and instructive anterior patterning rely on mRNA localization in the wasp embryo.
    Science, Vol. 315, No. 5820. (30 March 2007), pp. 1841-1843.
    by AE Brent, G Yucel, S Small, C Desplan
    posted to eisen_journal_club evolution expression_divergence expression_pattern gene_expression round_robin venky_presented by dpollard on 2007-06-04 22:55:22 as ** along with 1 person and 1 group lusk EisenLab
  • On the possibility of constructive neutral evolution.
    J Mol Evol, Vol. 49, No. 2. (August 1999), pp. 169-181.
    by A Stoltzfus
    posted to devin_presented eisen_journal_club evolution neutral round_robin by dpollard on 2007-06-04 22:49:42 as ** along with 1 group EisenLab
  • Evolutionary conservation in myoblast fusion
    Nature Genetics, Vol. 39, No. 6., pp. 704-705.
    by Robert S Krauss
    posted to conservation development drosophila evolution neural vertibrates by dpollard on 2007-06-01 00:11:58 as ** along with 1 group EisenLab
  • Tissue-specific transcriptional regulation has diverged significantly between human and mouse
    Nature Genetics, Vol. 39, No. 6. (21 May 2007), pp. 730-732.
    by Duncan T Odom, Robin D Dowell, Elizabeth S Jacobsen, William Gordon, Timothy W Danford, Kenzie D Macisaac, Alexander P Rolfe, Caitlin M Conboy, David K Gifford, Ernest Fraenkel
    posted to colin_presented eisen_journal_club evolution gene-expression human in_depth_suggestion mouse round_robin tissue-specific by dpollard on 2007-06-01 00:07:40 as ** along with 10 people and 4 groups gpalidwor dchughes cwbrown djkt cjeans maximilianh fpattyn caseybrown yevishere gdb EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Odorant-Binding Proteins OBP57d and OBP57e Affect Taste Perception and Host-Plant Preference in Drosophila sechellia
    PLoS Biology, Vol. 5, No. 5. (1 May 2007), e118.
    by Takashi Matsuo, Shigeru Sugaya, Jyunichiro Yasukawa, Toshiro Aigaki, Yoshiaki Fuyama
    posted to drosophila evolution odorant sechellia specialization by dpollard on 2007-05-31 23:43:20 as ** along with 1 group EisenLab
  • In Search of the Biological Significance of Modular Structures in Protein Networks
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e107.
    by Zhi Wang, Jianzhi Zhang
    posted to dan_presented eisen_journal_club evolution modularity network protein round_robin by dpollard on 2007-05-31 23:28:36 as *** along with 1 person and 1 group lp2 EisenLab
  • Identification and characterization of insect-specific proteins by genome data analysis
    BMC Genomics, Vol. 8 (04 April 2007), 93.
    by Guojie Zhang, Hongsheng Wang, Junjie Shi, Xiaoling Wang, Hongkun Zheng, Gane K Wong, Terry Clark, Wen Wang, Jun Wang, Le Kang
    posted to evolution gene_family insect by dpollard on 2007-04-09 16:52:08 as * along with 2 people and 2 groups tharris stajich C. elegans / WormBase EisenLab
  • Live Hot, Die Young: Transmission Distortion in Recombination Hotspots
    PLoS Genetics, Vol. 3, No. 3. (1 March 2007), e35.
    by Graham Coop, Simon R Myers
    posted to evolution recombination by dpollard on 2007-03-23 00:14:37 as ** along with 1 person and 1 group smbe2008 EisenLab
  • Identification of the Imprinted KLF14 Transcription Factor Undergoing Human-Specific Accelerated Evolution
    PLoS Genetics, Vol. preprint, No. 2007. (1 March 2007), e65.eor.
    by Layla Parker-Katiraee, Andrew R Carson, Takahiro Yamada, Philippe Arnaud, Robert Feil, Sayeda N Abu-Amero, Gudrun Moore, Masahiro Kaneda, George Perry, Anne C Stone, Charles Lee, Makiko Meguro-Horike, Hiroyuki Sasaki, Keiko Kobayashi, Kazuhiko Nakabayashi, Stephen W Scherer
    posted to adaptive evolution human imprinting by dpollard on 2007-03-23 00:11:33 as ** along with 2 people and 1 group cwbrown epigenetics EisenLab
  • Multiple Hypothesis Testing to Detect Lineages Under Positive Selection that Affects Only a Few Sites.
    Mol Biol Evol (5 March 2007)
    by Maria Anisimova, Ziheng Yang
    posted to adaptive evolution method multiple_testing by dpollard on 2007-03-22 23:51:26 as ** along with 3 people and 2 groups stevanspringer operon gjuggler EisenLab FAB-lab
  • Assessing the Determinants of Evolutionary Rates in the Presence of Noise.
    Mol Biol Evol (7 March 2007)
    by Joshua B B Plotkin, Hunter B B Fraser
    posted to evolution protein rate by dpollard on 2007-03-22 23:50:17 as ** along with 2 people and 1 group Garamonfok bpcusack EisenLab
  • Rapid evolution of smell and taste receptor genes during host specialization in Drosophila sechellia.
    Proc Natl Acad Sci U S A (9 March 2007)
    by Carolyn S S McBride
    posted to brant_presented drosophila eisen_journal_club evolution gene_family round_robin sechellia by dpollard on 2007-03-16 20:25:51 as ** along with 4 people and 1 group jbsaltz stajich zwang Stew EisenLab
  • Conserved sequences and the evolution of gene regulatory signals.
    Curr Opin Genet Dev, Vol. 15, No. 6. (December 2005), pp. 628-633.
    by MD Adams
    posted to binding_site evolution regulatory_sequence transcription_factor turnover variation by dpollard on 2007-03-15 00:22:24 as *** along with 2 people and 1 group cconboy lusk EisenLab
  • Evolution of cis-regulatory sequence and function in Diptera
    Heredity, Vol. aop, No. current.
    by PJ Wittkopp,
    posted to evolution prediction regulatory_sequence structure variation by dpollard on 2007-03-15 00:20:50 as read along with 5 people and 2 groups indigoviolet adepace emmahe cisevol emptyhb EisenLab cis-regulatory-evolution
  • Functional variation and evolution of non-coding DNA
    Current Opinion in Genetics & Development, Vol. 16, No. 6. (December 2006), pp. 559-564.
    by Christine P Bird, Barbara E Stranger, Emmanouil T Dermitzakis
    posted to evolution noncoding_dna regulatory_sequence variation by dpollard on 2007-03-15 00:18:50 as read along with 7 people and 4 groups dchughes adepace lusk sujaikumar candypmcg Stew cisevol EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Adaptations to fluctuating selection in Drosophila.
    Proc Natl Acad Sci U S A (7 February 2007)
    by Ville Mustonen, Michael Lässig
    posted to noncoding evolution drosophila adaptation by dpollard on 2007-02-10 01:21:39 as *** along with 1 person and 1 group lusk EisenLab
  • Comparative Genomics Reveals a Constant Rate of Origination and Convergent Acquisition of Functional Retrogenes in Drosophila
    Genome Biology, Vol. 8 (18 January 2007), R11.
    by Yongsheng Bai, Claudio Casola, Cedric Feschotte, Esther Betran
    posted to transposable_elements evolution drosophila by dpollard on 2007-02-01 19:38:38 as ** along with 2 people and 1 group indigoviolet shoshin EisenLab
  • Rapid Evolution of Outer Egg Membrane Proteins in the Drosophila melanogaster Subgroup: A Case of Ecologically Driven Evolution of Female Reproductive Traits.
    Mol Biol Evol (22 January 2007)
    by Santosh Jagadeeshan, Rama S S Singh
    posted to speciation protein evolution drosophila adaptive by dpollard on 2007-02-01 19:03:13 as ** along with 1 group EisenLab
  • Two or Four Bristles: Functional Evolution of an Enhancer of scute in Drosophilidae
    PLoS Biology, Vol. 4, No. 12. (1 November 2006), e386.
    by Sylvain Marcellini, Pat Simpson
    posted to dan_presented drosophila eisen_journal_club enhancer evolution in_depth phenotype round_robin stew_presented by dpollard on 2007-01-19 17:04:32 as read along with 3 people and 1 group adepace emmahe emptyhb EisenLab
  • Convergent adaptation of human lactase persistence in Africa and Europe - Nature Genetics
    Nature Genetics (10 December 2006)
    by Sarah A Tishkoff, Panos Deloukas
    posted to adaptation convergent eisen_journal_club evolution human round_robin stuart_presented by dpollard on 2006-12-13 22:28:22 as ** along with 1 group EisenLab
  • Estimating the Neutral Rate of Nucleotide Substitution Using Introns.
    Mol Biol Evol (22 November 2006)
    by Michael M M Hoffman, Ewan Birney
    posted to evolution neutral rate by dpollard on 2006-12-01 23:24:04 as **** along with 1 group EisenLab
  • Position specific variation in the rate of evolution in transcription factor binding sites.
    BMC Evol Biol, Vol. 3, No. 1. (28 August 2003)
    by AM Moses, DY Chiang, M Kellis, ES Lander, MB Eisen
    posted to binding conserved constraint evolution noncoding pattern phylogeny prediction pwm rate selection specific transcription by dpollard on 2006-11-07 00:22:07 as read along with 6 people and 2 groups briann adepace lusk nklee cisevol emptyhb EisenLab cis-regulatory-evolution
  • Evolutionary distances for protein-coding sequences: modeling site-specific residue frequencies.
    Mol Biol Evol, Vol. 15, No. 7. (July 1998), pp. 910-917.
    by AL Halpern, WJ Bruno
    posted to constraint evolution model motif mutation phylogeny selection by dpollard on 2006-11-07 00:11:19 as read along with 1 person and 1 group lusk EisenLab
  • Gene regulatory networks in the evolution and development of the heart.
    Science, Vol. 313, No. 5795. (29 September 2006), pp. 1922-1927.
    by EN Olson
    posted to development evolution heart network by dpollard on 2006-10-18 20:06:15 as ** along with 3 people and 1 group brant heliopais klo EisenLab
  • Heat-Shock Promoters: Targets for Evolution by P Transposable Elements in Drosophila.
    PLoS Genet, Vol. 2, No. 10. (6 October 2006)
    by Jean-Claude C Walser, Bing Chen, Martin E E Feder
    posted to chromatin evolution promoter te by dpollard on 2006-10-18 19:59:12 as * along with 1 person and 3 groups cisevol EisenLab cis-regulatory-evolution BergmanLab
  • Expression profile of a degenerating neo-y chromosome in Drosophila.
    Curr Biol, Vol. 16, No. 17. (5 September 2006), pp. 1694-1699.
    by D Bachtrog
    posted to drosophila evolution expression gene loss mechanism neo-y selection by dpollard on 2006-09-08 19:17:54 as ** along with 1 group EisenLab
  • Scale-invariant structure of strongly conserved sequence in genomic intersections and alignments.
    Proc Natl Acad Sci U S A (21 August 2006)
    by William Salerno, Paul Havlak, Jonathan Miller
    posted to conserved constraint evolution length noncoding by dpollard on 2006-08-25 17:47:37 as ** along with 1 person and 1 group jmeppley EisenLab
  • Intron Length Evolution in Drosophila.
    Mol Biol Evol (21 August 2006)
    by Daven C C Presgraves
    posted to drosophila evolution indel intron length polymorphism by dpollard on 2006-08-25 17:36:39 as *** along with 4 people and 1 group aprasad JAShapiro indigoviolet lilou EisenLab
  • Estimating Selection Pressures from Limited Comparative Data.
    Mol Biol Evol (5 June 2006)
    by Joshua B B Plotkin, Jonathan Dushoff, Michael M M Desai, Hunter B B Fraser
    posted to evolution gene method selection variation by dpollard on 2006-07-13 19:10:38 as *** along with 4 people and 1 group bnchakraborty djkt BioNica friendpine EisenLab
  • Close sequence comparisons are sufficient to identify human cis-regulatory elements.
    Genome Res (12 June 2006)
    by Shyam Prabhakar, Francis Poulin, Malak Shoukry, Veena Afzal, Edward M M Rubin, Olivier Couronne, Len A A Pennacchio
    posted to alignment annotation conserved constraint evolution human mammal prediction rate selection transcription turnover by dpollard on 2006-06-16 20:47:54 as ** along with 8 people and 2 groups indigoviolet samal nickluscombe olympos emptyhb bpcusack mariakmejia kcrawlik EisenLab EBI-regulation
  • MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution
    BMC Bioinformatics, Vol. 7 (08 June 2006), 292.
    by Jun Wang, Peter D Keightley, Toby Johnson
    posted to alignment evolution indel model by dpollard on 2006-06-16 20:34:32 as *** along with 3 people and 1 group Ayest papamicd bozdagd EisenLab
  • Observations of Amino Acid Gain and Loss During Protein Evolution are Explained by Statistical Bias.
    Mol Biol Evol (11 May 2006)
    by Richard A A Goldstein, David D D Pollock
    posted to acid amino evolution rate by dpollard on 2006-06-13 18:55:46 as ** along with 1 person and 1 group RMGraze EisenLab
  • Evolutionary population genetics of promoters: Predicting binding sites and functional phylogenies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15936-15941.
    by V Mustonen, M Lässig
    posted to binding evolution polymorphism promoter selection transcription turnover by dpollard on 2006-06-10 00:48:36 as **** along with 4 people and 2 groups kaarsinogen lusk cisevol emptyhb EisenLab cis-regulatory-evolution
  • Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison.
    Genome Res (2 June 2006)
    by Daniel L L Halligan, Peter D D Keightley
    posted to constraint drosophila evolution purifying selection by dpollard on 2006-06-09 22:48:45 as **** along with 5 people and 3 groups RMGraze penka jri cisevol emptyhb EisenLab Nie cis-regulatory-evolution
  • Genomic Inferences of the cis-Regulatory Nucleotide Polymorphisms Underlying Gene Expression Differences between Drosophila melanogaster Mating Races.
    Mol Biol Evol (5 June 2006)
    by Naoki Osada, Michael H H Kohn, Chung-I I Wu
    posted to drosophila evolution expression polymorphism promoter speciation variation by dpollard on 2006-06-09 22:43:58 as *** along with 4 people and 1 group emilyhare adepace natstreet emptyhb EisenLab
  • Evolutionary turnover of mammalian transcription start sites.
    Genome Res (10 May 2006)
    by Martin C C Frith, Jasmina Ponjavic, David Fredman, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayshizaki, Albin Sandelin
    posted to alignment conserved evolution gene mammal promoter transcription turnover vertebrate by dpollard on 2006-05-12 17:41:10 as ** along with 4 people and 3 groups cmm jsnoddy cisevol gjuggler EisenLab FAB-lab cis-regulatory-evolution
  • Evaluating phylogenetic footprinting for human-rodent comparisons.
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 430-437.
    by T Sauer, E Shelest, E Wingender
    posted to alignment binding conserved evolution mammal motif rate transcription vertebrate by dpollard on 2006-05-01 22:45:46 as ** along with 1 group EisenLab
  • Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
    Nature, Vol. 440, No. 7082., pp. 341-345.
    by Devin R Scannell, Kevin P Byrne, Jonathan L Gordon, Simon Wong, Kenneth H Wolfe
    posted to duplication evolution gene loss rapid speciation yeast by dpollard on 2006-04-26 04:40:40 as ** along with 5 people and 2 groups RMGraze cmm echinotrix souravc cisevol EisenLab FAB-lab
  • Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.
    Genome Biol, Vol. 3, No. 12. (2002)
    by CM Bergman, BD Pfeiffer, DE Rincón-Limas, RA Hoskins, A Gnirke, CJ Mungall, AM Wang, B Kronmiller, J Pacleb, S Park, M Stapleton, K Wan, RA George, PJ de Jong, J Botas, GM Rubin, SE Celniker
    posted to annotation drosophila evolution by dpollard on 2006-04-08 23:10:33 as read along with 4 people and 2 groups indigoviolet nklee cisevol brant EisenLab cis-regulatory-evolution
  • Estimating the genome-wide rate of adaptive protein evolution in Drosophila.
    Genetics (2 April 2006)
    by John J J Welch
    posted to adaptive drosophila evolution gene variation by dpollard on 2006-04-07 18:58:03 as *** along with 2 people and 1 group indigoviolet jri EisenLab
  • Functional Partitioning of Yeast Co-Expression Networks after Genome Duplication.
    PLoS Biol, Vol. 4, No. 4. (4 April 2006)
    by Gavin C C Conant, Kenneth H H Wolfe
    posted to duplication evolution gene network yeast by dpollard on 2006-04-05 01:43:35 as *** along with 2 people and 1 group nirfriedman bpcusack EisenLab
  • Natural Selection Drives Extremely Rapid Evolution in Antiviral RNAi Genes.
    Curr Biol, Vol. 16, No. 6. (21 March 2006), pp. 580-585.
    by DJ Obbard, FM Jiggins, DL Halligan, TJ Little
    posted to adaptive antiviral evolution rnai by dpollard on 2006-04-02 23:05:05 as ** along with 3 people and 1 group shuzhens ejeffery tabu EisenLab
  • Rates and patterns of chromosomal evolution in Drosophila pseudoobscura and D. miranda.
    Genetics (17 March 2006)
    by Carolina Bartolome, Brian Charlesworth
    posted to drosophila evolution genomic inversion rate by dpollard on 2006-04-02 23:03:09 as ** along with 2 people and 1 group operon jri EisenLab
  • Strong region-specific heterogeneity in base composition evolution on the Drosophila X chromosome.
    Genetics (17 March 2006)
    by Wen-Ya Y Ko, Shengfu Piao, Hiroshi Akashi
    posted to base composition drosophila evolution gene nonstationary rate reconstruction tree variation by dpollard on 2006-03-31 23:50:30 as ***** along with 1 group EisenLab
  • The Widespread Impact of Mammalian MicroRNAs on mRNA Repression and Evolution.
    Science (24 November 2005)
    by Kyle Kai-How K Farh, Andrew Grimson, Calvin Jan, Benjamin P P Lewis, Wendy K K Johnston, Lee P P Lim, Christopher B B Burge, David P P Bartel
    posted to 3utr adaptive binding development evolution expression gene microrna regulation by dpollard on 2006-03-21 20:29:40 as ** along with 14 people and 4 groups jerlich mfenner aprasad dayjm marcius eckart_bindewald mortenlindow mtagaya noano lp2 heliopais Alexander_Kanitz jfr caseybrown EisenLab microRNA BioinfoCIPF SGU-CIPF
  • Loss of dispensable genes is not adaptive in yeast.
    Proc Natl Acad Sci U S A, Vol. 102, No. 49. (6 December 2005), pp. 17670-17674.
    by P Sliwa, R Korona
    posted to adaptive environment evolution gene non-essential yeast by dpollard on 2006-03-21 20:19:55 as *** along with 2 people and 1 group aprasad i41m EisenLab
  • Pair rule gene orthologs in spider segmentation
    Evolution & Development, Vol. 7, No. 6. (November 2005), pp. 618-628.
    by Wim G Damen, Ralf Janssen, Nikola-Michael Prpic
    posted to development drosophila evolution expression gene insect by dpollard on 2006-03-21 20:14:07 as ** along with 1 person and 1 group balicea EisenLab
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