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di dbikard watchlist [238 articles]

Gli articoli piu' recenti che soddisfano i criteri di watchlist di di dbikard
  • Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology
    (15 January 1997)
    by Dan Gusfield
    posted to genome_biology by timflutre to the group Centre de Recherches Interdisciplinaires on 2008-10-09 09:49:05 as ** along with 12 people and 1 group ujh creswick tijl grzegorz luispedro emranmohdtamil hoangmit thonnardo pool007 nedwards ep161302 reyez Pattern-Analysis
  • Genome Annotation in Plants and Fungi: EuGene as a Model Platform
    Current Bioinformatics, Vol. 3, No. 2. (May 2008), pp. 87-97.
    by Foissac, Sylvain, Gouzy, Jerome, Rombauts, Stephane, Mathe, Catherine, Amselem, Joelle, Sterck, Lieven, De Peer, V Yves, Rouze, Pierre, Schiex, Thomas
    posted to genome_biology by timflutre to the group Centre de Recherches Interdisciplinaires on 2008-10-09 09:31:13 as ** along with 3 people GustavoLacerda jamselem orzenil
  • A genetic timer through noise-induced stabilization of an unstable state
    Proceedings of the National Academy of Sciences (3 October 2008)
    by Marc Turcotte, Jordi Garcia-Ojalvo, Gürol M Süel
    posted to synthetic_biology stability noise mathematical_model gene_regulation feedback by jjray on 2008-10-05 21:38:11 as **
  • Frequency-modulated nuclear localization bursts coordinate gene regulation
    Nature, Vol. 455, No. 7212. (2008), pp. 485-490.
    by Long Cai, Chiraj K Dalal, Michael B Elowitz
    posted to gene_regulation frequency eukaryote by jjray on 2008-09-24 19:32:33 as ** along with 2 people Ema caseybrown
  • Conservation and evolutionary dynamics of the agr cell-to-cell communication system across firmicutes.
    Journal of bacteriology, Vol. 190, No. 2. (January 2008), pp. 743-746.
    by A Wuster, MM Babu
    posted to signaling quorum_sensing network gene_regulation evolutionary_dynamics evolution chromosome_organization bacteria by jjray on 2008-09-23 20:39:30 as **
  • Small RNAs Establish Delays and Temporal Thresholds in Gene Expression.
    Biophysical journal (3 July 2008)
    by Stefan Legewie, Dennis Dienst, Annegret Wilde, Hanspeter Herzel, Ilka Axmann
    posted to temporal_response sirna mathematical_model gene_regulation bacteria by jjray on 2008-09-23 16:25:36 as ** along with 1 person reyez
  • A crop population perspective on maize seed systems in Mexico
    Proceedings of the National Academy of Sciences, Vol. 105, No. 2. (15 January 2008), pp. 470-475.
    by George A Dyer, Edward J Taylor
    posted to technological metapopulations evolution diversity diffusion crop and by mateothom to the group Centre de Recherches Interdisciplinaires on 2008-09-15 20:19:42 as **
  • Ten Simple Rules for a Good Poster Presentation
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e102.
    by Thomas C Erren, Philip E Bourne
    posted to poster misc by timflutre to the group Centre de Recherches Interdisciplinaires on 2008-09-11 22:38:41 as ** along with 12 people and 3 groups monkare robertlischke abellogin misonneh kimbellanderson Zephyrus julius sebastien_vigneau grahamc zwang Torsten_Holmer emptyhb Roswell Cancer Crosstalk SysbioMPI-TCells ParkinsonLab_at_MaRS
  • Ten Simple Rules for Making Good Oral Presentations
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e77.
    by Philip E Bourne
    posted to talk misc by timflutre to the group Centre de Recherches Interdisciplinaires on 2008-09-11 22:37:06 as ** along with 20 people and 2 groups monkare robertlischke NIlz schlady pavanghatty abellogin dergrosse donstechan bpumphre silberbauer markusd kimbellanderson Zephyrus Yanno hmk rodney zwang Torsten_Holmer jfr bxk Roswell Cancer Crosstalk Kopelman_Group
  • A Brief History of the Hypothesis
    Cell, Vol. 134, No. 3. (8 August 2008), pp. 378-381.
    by David J Glass, Ned Hall
    posted to philosophy by Enro to the group Centre de Recherches Interdisciplinaires on 2008-08-28 14:23:24 as ** along with 14 people and 2 groups leonor HugoMarcelo druvus A_Olympia reyez barry paulschlesinger jjray robertlischke chad_davis Zephyrus bpcusack phoenixzxl Tominator logics of knowledge Roswell Cancer Crosstalk
  • Bacillus subtilis PhoP binds to the phoB tandem promoter exclusively within the phosphate starvation-inducible promoter
    J. Bacteriol., Vol. 179, No. 20. (1 October 1997), pp. 6302-6310.
    by W Liu, FM Hulett
    posted to atp bacillus_subtilis gene_regulation phosphorylation two-component_system by jjray on 2008-08-22 19:34:32 as read
  • Dimerization and DNA binding of the Salmonella enterica PhoP response regulator are phosphorylation independent
    Microbiology, Vol. 151, No. 12. (1 December 2005), pp. 3979-3987.
    by Philippe Perron-Savard, Gregory De Crescenzo, Herve L Moual
    posted to bacteria dimerization gene_regulation phopq phosphorylation salmonella signaling two-component_system by jjray on 2008-08-20 20:08:31 as **
  • Regulatory Control and the Costs and Benefits of Biochemical Noise
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000125.
    by Sorin Tănase-Nicola, Pieter Rein ten Wolde
    posted to cost-benefit gene_expression gene_regulation growth_rate mathematical_model noise stochastic trade-off by jjray on 2008-08-17 16:59:18 as ** along with 2 people Ema klo
  • Targeted development of registries of biological parts.
    PLoS ONE, Vol. 3, No. 7. (2008)
    by J Peccoud, MF Blauvelt, Y Cai, KL Cooper, O Crasta, EC DeLalla, C Evans, O Folkerts, BM Lyons, SP Mane, R Shelton, MA Sweede, SA Waldon
    posted to synthetic_biology by grahamc on 2008-08-12 20:11:41 as ** along with 2 people gulsacan austin
  • Protein fabrication automation.
    Protein Sci, Vol. 16, No. 3. (March 2007), pp. 379-390.
    by JC Cox, J Lape, MA Sayed, HW Hellinga
    posted to synthetic_biology by grahamc on 2008-08-12 20:08:48 as ** along with 2 people jyuh austin
  • Engineering BioBrick vectors from BioBrick parts.
    Journal of biological engineering, Vol. 2, No. 1. (2008)
    by RP Shetty, D Endy, TF Knight
    posted to synthetic_biology igem by grahamc on 2008-08-12 20:08:02 as ** along with 3 people jyuh j4murali austin
  • Synthetic Biology: Drawing a Line in Darwin's Sand
    Environmental Values, Vol. 17, No. 1. (February 2008), pp. 23-39.
    by Preston, J Christopher
    posted to ethics synthetic_biology by grahamc on 2008-08-12 20:05:03 as **
  • DNA polymerization on the inner surface of a giant liposome for synthesizing an artificial cell model
    Soft Matter, Vol. 2, No. 5. (2006), pp. 402-408.
    by Koh-Ichiroh Shohda, Tadashi Sugawara
    posted to evolution synthetic_biology by grahamc on 2008-08-12 20:03:21 as ** along with 1 person kevinchannon
  • Miniaturising the laboratory in emulsion droplets
    Trends in Biotechnology, Vol. 24, No. 9. (September 2006), pp. 395-402.
    by Andrew D Griffiths, Dan S Tawfik
    posted to synthetic_biology by grahamc on 2008-08-12 19:55:07 as ** along with 2 people and 2 groups dchughes kevinchannon G4ID Genetics-of-Gambling
  • Engineering modular protein interaction switches by sequence overlap.
    J Am Chem Soc, Vol. 129, No. 15. (18 April 2007), pp. 4606-4611.
    by NA Sallee, BJ Yeh, WA Lim
    posted to interactions protein-protein synthetic_biology by grahamc on 2008-08-12 19:53:48 as ** along with 1 person melting
  • Refinement and standardization of synthetic biological parts and devices
    Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 787-793.
    by Barry Canton, Anna Labno, Drew Endy
    posted to synthetic_biology igem by grahamc on 2008-08-12 19:45:10 as ** along with 2 people marck austin
  • Life cycle of a minimal protocell--a dissipative particle dynamics study.
    Artif Life, Vol. 13, No. 4. (2007), pp. 319-345.
    by H Fellermann, S Rasmussen, HJ Ziock, RV Solé
    posted to evolution synthetic_biology by grahamc on 2008-08-12 19:43:40 as ** along with 1 person kevinchannon
  • Synthetic biology projects in vitro
    Genome Res., Vol. 17, No. 1. (1 January 2007), pp. 1-6.
    by Anthony C Forster, George M Church
    posted to synthetic_biology by grahamc on 2008-08-12 19:36:57 as ** along with 3 people Olaf_Ilzins kjedler austin
  • RNA and RNP as new molecular parts in synthetic biology
    Journal of Biotechnology, Vol. 132, No. 1. (15 October 2007), pp. 1-7.
    by Hirohide Saito, Tan Inoue
    posted to synthetic_biology by grahamc on 2008-08-12 19:31:44 as ** along with 2 people austin marck
  • Rapid and sensitive pollutant detection by induction of heat shock gene-bioluminescence gene fusions.
    Appl Environ Microbiol, Vol. 60, No. 5. (May 1994), pp. 1414-1420.
    by TK Van Dyk, WR Majarian, KB Konstantinov, RM Young, PS Dhurjati, RA LaRossa
    posted to synthetic_biology by grahamc on 2008-08-12 19:13:56 as ** along with 1 person and 1 group BUiGEM BUiGEM
  • Network dynamics and cell physiology.
    Nat Rev Mol Cell Biol, Vol. 2, No. 12. (December 2001), pp. 908-916.
    by JJ Tyson, K Chen, B Novak
    posted to synthetic_biology by grahamc on 2008-08-12 19:12:34 as ** along with 7 people and 3 groups rklancer dbk macowell bayesian sinister jbchang Evangelia streptomyces dbk-lab BUiGEM
  • Estimation of the Source-by-Source Effect of Autorepression on Genetic Noise
    Biophys. J., Vol. 95, No. 3. (1 August 2008), pp. 1063-1074.
    by Hiroyuki Okano, Tetsuya J Kobayashi, Hirokazu Tozaki, Hidenori Kimura
    posted to extrinsic_noise feedback gene_regulation noise by jjray on 2008-07-21 22:57:14 as **
  • An Introduction to Systems Biology: Design Principles of Biological Circuits (Chapman & Hall/Crc Mathematical and Computational Biology Series)
    (07 July 2006)
    by Uri Alon
    posted to biochemistry design_principles feedback mathematical_model response_time robustness synthetic_biology systems_approach by jjray on 2008-07-16 16:31:47 as ** along with 8 people and 2 groups joseph_x_zhou aalibes balajis balicea mattjb fishtank akastrin azazello ComplexAdaptiveSystems DSTO-CAS
  • Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells
    Genome Res. (15 May 2008), gr.072769.107.
    by Dan Xie, Jun Cai, Na-Yu Chia, Huck Ng, Sheng Zhong
    posted to synthetic_biology by phoenixzxl on 2008-07-16 07:29:32 as ** along with 5 people maximilianh idonaldson isimpson GustavoLacerda yoonk
  • Autoamplification of a two-component regulatory system results in "learning" behavior.
    Journal of bacteriology, Vol. 183, No. 16. (August 2001), pp. 4914-4917.
    by SM Hoffer, HV Westerhoff, KJ Hellingwerf, PW Postma, J Tommassen
    posted to bacteria feedback gene_regulation two-component_system by jjray on 2008-07-13 19:31:16 as read
  • Making informed decisions: regulatory interactions between two-component systems.
    Trends in microbiology, Vol. 11, No. 8. (August 2003), pp. 359-366.
    by JJ Bijlsma, EA Groisman
    posted to bacteria gene_regulation two-component_system by jjray on 2008-07-13 19:30:06 as read
  • Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation.
    Nature reviews. Genetics (1 July 2008)
    by Luis López-Maury, Samuel Marguerat, Jürg Bähler
    posted to gene_expression gene_regulation response_time review stress_response by jjray on 2008-07-11 17:18:30 as ** along with 9 people and 1 group lp2 vertikalist Ema jmjimenez bootsy klo cambray bpcusack jyuh BTS-PT-AS-CS
  • Intrinsic and extrinsic contributions to stochasticity in gene expression.
    Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 12795-12800.
    by PS Swain, MB Elowitz, ED Siggia
    posted to gene_expression gene_regulation mathematical_model noise stochastic by jjray on 2008-07-01 18:08:59 as ** along with 5 people JKelly555 madhadron balabu timflutre margaritis
  • Stochastic gene expression in a single cell.
    Science, Vol. 297, No. 5584. (16 August 2002), pp. 1183-1186.
    by MB Elowitz, AJ Levine, ED Siggia, PS Swain
    posted to gene_expression gene_regulation noise stochastic by jjray on 2008-07-01 18:08:23 as ** along with 16 people and 3 groups wilvc madhadron cottrell mmt litam mhucka timflutre margaritis roland_ewald ptupper mjoach tvdbulck jiny balicea dylanwalker austin UWNICU dIEMoSIRIS MoSi-Rostock
  • Intrinsic noise in gene regulatory networks.
    Proc Natl Acad Sci U S A, Vol. 98, No. 15. (17 July 2001), pp. 8614-8619.
    by M Thattai, A van Oudenaarden
    posted to gene_regulation mathematical_model network noise by jjray on 2008-07-01 18:07:54 as ** along with 3 people bayesian timflutre margaritis
  • Comparative analyses of bidirectional promoters in vertebrates.
    BMC bioinformatics, Vol. 9 Suppl 6 (2008)
    by MQ Yang, J Taylor, L Elnitski
    posted to chromosome_organization evolution gene_regulation phylogeny promoter by jjray on 2008-06-30 23:20:37 as ** along with 1 person bootsy
  • Engineering stochasticity in gene expression.
    Molecular bioSystems, Vol. 4, No. 7. (July 2008), pp. 754-761.
    by JJ Tabor, TS Bayer, ZB Simpson, M Levy, AD Ellington
    posted to gene_expression review stochastic synthetic_biology by jjray on 2008-06-25 15:24:51 as ** along with 1 person austin
  • Protein Design by Directed Evolution
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 153-173.
    by Christian Jackel, Peter Kast, Donald Hilvert
    posted to protein_design review synthetic_biology by phoenixzxl on 2008-06-25 08:26:36 as ** along with 1 person zwang
  • Rate constants rather than biochemical mechanism determine behaviour of genetic clocks
    Journal of The Royal Society Interface
    by Emery Conrad, Avraham E Mayo, Alexander J Ninfa, Daniel B Forger
    posted to feedback gene_network gene_regulation kinetics mathematical_model oscillation parameter by jjray on 2008-06-23 20:00:00 as **
  • Design of Multi-Specificity in Protein Interfaces
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e164.
    by Elisabeth L Humphris, Tanja Kortemme
    posted to prediction_interface specificity synthetic_biology by phoenixzxl on 2008-06-23 11:03:15 as ** along with 7 people and 3 groups msuarezdiez jwm bicko Einat dpollard Scis0000002 marck structural_bioinformatics Bioinformatics EisenLab
  • Signal-dependent Binding of the Response Regulators PhoP and PmrA to Their Target Promoters in Vivo
    J. Biol. Chem., Vol. 280, No. 6. (11 February 2005), pp. 4089-4094.
    by Dongwoo Shin, Eduardo A Groisman
    posted to bacteria gene_regulation phosphorylation signaling two-component_system by jjray on 2008-06-20 20:19:28 as read
  • Gene network shaping of inherent noise spectra
    Nature, Vol. 439, No. 7076., pp. 608-611.
    by DW Austin, MS Allen, JM Mccollum, RD Dar, JR Wilgus, GS Sayler, NF Samatova, CD Cox, ML Simpson
    posted to biochemicalnoise ecoli genecircuits genenetworks noise powerspectra ppi by dylanwalker on 2008-06-20 04:19:12 as read along with 4 people and 1 group okarsligil madhadron balabu margaritis Bioinformatics
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
    posted to es_cell gene_regulation network transcriptional_regulation by jjray on 2008-06-13 19:29:49 as ** along with 4 people inesdesantiago caseybrown kengg gdb
  • The pleiotropic two-component regulatory system PhoP-PhoQ.
    Journal of bacteriology, Vol. 183, No. 6. (March 2001), pp. 1835-1842.
    by EA Groisman
    posted to gene_regulation review two-component_system by jjray on 2008-06-11 18:17:51 as read
  • A Positive Feedback Loop Promotes Transcription Surge That Jump-Starts Salmonella Virulence Circuit
    Science, Vol. 314, No. 5805. (8 December 2006), pp. 1607-1609.
    by Dongwoo Shin, Eun-Jin Lee, Henry Huang, Eduardo A Groisman
    posted to bacteria feedback gene_expression gene_regulation phopq salmonella two-component_system by jjray on 2008-05-26 16:27:20 as read
  • Adaptive Phenotypic Plasticity in Response to Climate Change in a Wild Bird Population
    Science, Vol. 320, No. 5877. (9 May 2008), pp. 800-803.
    by Anne Charmantier, Robin H Mccleery, Lionel R Cole, Chris Perrins, Loeske E Kruuk, Ben C Sheldon
    posted to phenotypic_plasticity by timflutre to the group Centre de Recherches Interdisciplinaires on 2008-05-15 17:26:01 as ** along with 2 people iBartomeus Stockman
  • Recommandation de la Commission Européenne concernant la charte européenne du chercheur et un code de conduite pour le recrutement des chercheurs
    Journal officiel de l’Union européenne (11 March 2005)
    by Commission Européenne
    posted to education by timflutre to the group Centre de Recherches Interdisciplinaires on 2008-05-14 10:51:19 as **
  • La crise du système d'évaluation scientifique
    Commentaire, Vol. 109 (2005), pp. 111-116.
    by Laurent Nottale
    posted to creativity by timflutre to the group Centre de Recherches Interdisciplinaires on 2008-05-14 10:15:06 as **
  • On the Process of Becoming a Great Scientist
    PLoS Computational Biology, Vol. 4, No. 2. (1 February 2008), e33.
    by Morgan C Giddings
    posted to education phd_guide by timflutre to the group Centre de Recherches Interdisciplinaires on 2008-05-14 10:14:35 as ** along with 6 people and 1 group Zephyrus jfr dullhunk RamuAnandakrishnan sci91078 jyuh Roswell Cancer Crosstalk
  • A student's guide to research
    Control Systems Magazine, IEEE, Vol. 19, No. 1. (1999), pp. 102-108.
    by DS Bernstein
    posted to phd_guide by timflutre to the group Centre de Recherches Interdisciplinaires on 2008-05-14 09:36:17 as ** along with 2 people pratap nalf
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