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di csgillespie library [52 articles]

Articoli aggiunti di recente nella biblioteca di csgillespie .
  • Sparse graphical models for exploring gene expression data
    Journal of Multivariate Analysis, Vol. 90, No. 1. (July 2004), pp. 196-212.
    by Adrian Dobra, Chris Hans, Beatrix Jones, Nevins, Guang Yao, Mike West
    posted to network by csgillespie on 2008-09-19 15:19:01 as ** along with 2 people jo_davies srp33
  • Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks.
    Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2271-2282.
    by D Husmeier
    posted to network by csgillespie on 2008-09-19 15:18:11 as ** along with 3 people wnpx frohike edwardmorrissey
  • Advances to Bayesian network inference for generating causal networks from observational biological data
    Bioinformatics, Vol. 20, No. 18., 3594.
    by Jing Yu, Anne A Smith, Paul P Wang, Alexander J Hartemink
    posted to network by csgillespie on 2008-09-19 15:18:06 as ** along with 2 people heliopais roys
  • A probabilistic functional network of yeast genes.
    Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558.
    by I Lee, SV Date, AT Adai, EM Marcotte
    posted to network by csgillespie on 2008-09-19 15:17:59 as ** along with 15 people and 3 groups irenas lfriedl ccots balajis nuke2005 eweaver opheliav nickluscombe reidy dbgrant kintoki balicea svdate ellakat roys dbk-lab kdl EBI-regulation
  • Impact of gene expression data pre-processing on expression quantitative trait locus mapping
    BMC Proceedings, Vol. 1, No. Suppl 1. (2007)
    by Aurelie Labbe, Marie P Roth, Pierre H Carmichael, Maria Martinez
    posted to rma microarray gcrma by csgillespie on 2008-09-18 17:26:25 as ** along with 1 person caseybrown
  • Comparison of algorithms for the analysis of Affymetrix microarray data as evaluated by co-expression of genes in known operons
    Nucleic Acids Research, Vol. 34, No. 2. (2006), pp. e8-e8.
    by Bettina Harr, Christian Schlotterer
    posted to rma microarray gcrma by csgillespie on 2008-09-18 17:09:34 as **
  • SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool
    BMC Bioinformatics, Vol. 9 (15 August 2008), 342.
    by Zhike Zi, Yanan Zheng, Ann E Rundell, Edda Klipp
    posted to sbml by csgillespie on 2008-08-20 11:38:05 as ** along with 2 people renatomilani jyuh
  • Assessing quality of hybridized RNA in Affymetrix GeneChip experiments using mixed-effects models
    Biostatistics, Vol. 7, No. 2. (April 2006), pp. 198-212.
    by Archer, J Kellie, Dumur, I Catherine, Joel, E Suresh, Ramakrishnan, Viswanathan
    posted to no-tag by csgillespie on 2008-08-14 10:20:04 as ** along with 1 person bertelsen
  • Understanding NF-[kappa]B signaling via mathematical modeling
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Raymond Cheong, Alexander Hoffmann, Andre Levchenko
    posted to mathematical-modelling sysbio by csgillespie on 2008-05-10 13:21:20 as ** along with 2 people Borelli renatomilani
  • Modelling the flow of congestive heart failure patients through a hospital system
    Journal of the Operational Research Society, Vol. 58, No. 2. (2007), pp. 212-218.
    by B Shaw, AH Marshall
    posted to data markov by csgillespie on 2008-05-08 10:07:58 as **
  • Gene regulation at the single-cell level.
    Science, Vol. 307, No. 5717. (25 March 2005), pp. 1962-1965.
    by N Rosenfeld, JW Young, U Alon, PS Swain, MB Elowitz
    posted to data by csgillespie on 2008-04-15 09:17:56 as ** along with 13 people rklancer snuppepuppan kentsis Toze bayesian balicea JKelly555 balabu comb mhucka timflutre margaritis vladimirov
  • Pathway Analysis of Microarray Data via Regression
    Journal of Computational Biology, Vol. 0, No. 0. (0), pp. 1-9.
    by AJ Adewale, I Dinu, JD Potter, Q Liu, Y Yasui
    posted to biology sysbio by csgillespie on 2008-03-13 09:21:54 as ** along with 6 people tmmurali huali heliopais jyuh jfr AlexanderPico
  • Modeling Clonal Expansion from M-FISH Experiments
    Journal of Computational Biology, Vol. 15, No. 2. (2008), pp. 221-230.
    by Thomas Stolte, Volker Hosel, Johannes Muller, Michael Speicher
    posted to biology sysbio by csgillespie on 2008-03-13 09:21:45 as **
  • Classical versus Stochastic Kinetics Modeling of Biochemical Reaction Systems
    Biophys. J., Vol. 92, No. 7. (1 April 2007), pp. 2350-2365.
    by John Goutsias
    posted to moment-closure stochastic by csgillespie on 2008-02-25 13:22:32 as ** along with 1 person ibschwartz
  • Conditioned averages in chemical kinetics
    The Journal of Chemical Physics, Vol. 75, No. 2. (1981), pp. 704-709.
    by Daniel T Gillespie, Marc Mangel
    posted to moment-closure stochastic by csgillespie on 2008-02-25 10:37:11 as **
  • Inflammatory Aetiology of Human Myometrial Activation Tested Using Directed Graphs
    PLoS Computational Biology, Vol. 1, No. 2. (1 July 2005), e19.
    by Andrew M Bisits, Roger Smith, Sam Mesiano, George Yeo, Kenneth Kwek, David Macintyre, Eng C Chan
    posted to dag by csgillespie on 2008-02-19 18:43:53 as **
  • Bayesian inference for a discretely observed stochastic kinetic model
    Statistics and Computing
    by R Boys, D Wilkinson, T Kirkwood
    posted to no-tag by csgillespie on 2008-02-18 19:03:45 as **
  • Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation
    Bioinformatics, Vol. 14, No. 10. (1 November 1998), pp. 869-883.
    by P Mendes, D Kell
    posted to data estimation hiv by csgillespie on 2008-01-22 15:26:21 as ** along with 3 people and 1 group dullhunk dagmar pmendes compneur
  • Towards Reusing Model Components in Systems Biology
    Computational Methods in Systems Biology (2005), pp. 192-206.
    by Adelinde M Uhrmacher, Daniela Degenring, Jens Lemcke, Mario Krahmer
    posted to sysbio by csgillespie on 2008-01-18 23:15:16 as ** along with 2 people and 3 groups carmaus dagmar dIEMoSIRIS MoSi-Rostock compneur
  • The SBML Discrete Stochastic Models Test Suite
    Bioinformatics, Vol. 24, No. 2. (19 January 2008), pp. 285-286.
    by Thomas W Evans, Colin S Gillespie, Darren J Wilkinson
    posted to no-tag by csgillespie on 2008-01-15 09:33:32 as ** along with 2 people mailund Ema
  • Bayesian inference for stochastic epidemic models with time-inhomogeneous removal rates
    Journal of Mathematical Biology, Vol. 55, No. 2. (August 2007), pp. 223-247.
    by Boys, Richard, Giles, Philip
    posted to model-fit predictive-distributions by csgillespie on 2007-12-07 13:53:47 as ** along with 1 person cottrell
  • A Derivative Matching Approach to Moment Closure for the Stochastic Logistic Model
    Bulletin of Mathematical Biology, Vol. 69, No. 6. (2007), pp. 1909-1925.
    by Abhyudai Singh, João Hespanha
    posted to moment-closure by csgillespie on 2007-12-06 12:14:45 as **
  • Computational Analysis of Biochemical Systems : A Practical Guide for Biochemists and Molecular Biologists
    (04 September 2000)
    by Eberhard O Voit
    posted to s-system by csgillespie on 2007-12-06 11:57:15 as read along with 2 people jjray cangiani
  • Stochastic Noise and Synchronisation during Dictyostelium Aggregation Make cAMP Oscillations Robust
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e218.
    by Jongrae Kim, Pat Heslop-Harrison, Ian Postlethwaite, Declan G Bates
    posted to no-tag by csgillespie on 2007-12-03 11:59:44 as **
  • Steady-state expression of self-regulated genes
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3185-3192.
    by T Fournier, JP Gabriel, C Mazza, J Pasquier, JL Galbete, N Mermod
    posted to stochastic sysbio by csgillespie on 2007-11-27 20:24:56 as ** along with 1 person austin
  • SBML-PET: a Systems Biology Markup Language-based parameter estimation tool
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2704-2705.
    by Zi, Zhike, Klipp, Edda
    posted to data estimation parameter by csgillespie on 2007-11-02 16:34:06 as ** along with 3 people dullhunk jrbanga Ronalddonald
  • A practical guide to stochastic simulations of reaction-diffusion processes
    (15 Apr 2007)
    by Radek Erban, Jonathan Chapman, Philip Maini
    posted to no-tag by csgillespie on 2007-10-31 21:33:08 as ** along with 3 people and 3 groups cottrell roland_ewald dagmar dIEMoSIRIS MoSi-Rostock compneur
  • Chaos in a Three-Species Food Chain
    Ecology, Vol. 72, No. 3. (1991), pp. 896-903.
    by Alan Hastings, Thomas Powell
    posted to chaos by csgillespie on 2007-10-31 13:52:27 as **
  • A microarray analysis for differential gene expression in the soybean genome using Bioconductor and R.
    Brief Bioinform (17 October 2007)
    by W Gregory G Alvord, Jean A A Roayaei, Octavio A A Quiñones, Katherine T Schneider
    posted to microarray tutorial by csgillespie on 2007-10-30 09:44:18 as ** along with 1 person bertelsen
  • Conservation laws and unidentifiability of rate expressions in biochemical models
    Systems Biology, IET, Vol. 1, No. 4. (2007), pp. 230-237.
    by M Anguelova, G Cedersund, M Johansson, CJ Franzen, B Wennberg
    posted to computer-simulation mathematical-modelling model sensitivity by csgillespie on 2007-10-23 10:58:17 as ** along with 1 person fishtank
  • The statistical mechanics of complex signaling networks: nerve growth factor signaling
    Physical Biology, Vol. 1, No. 3. (2004), pp. 184-195.
    by KS Brown, CC Hill, GA Calero, CR Myers, KH Lee, JP Sethna, RA Cerione
    posted to data model by csgillespie on 2007-10-11 13:30:22 as **
  • Universally Sloppy Parameter Sensitivities in Systems Biology Models
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e189.
    by Ryan N Gutenkunst, Joshua J Waterfall, Fergal P Casey, Kevin S Brown, Christopher R Myers, James P Sethna
    posted to sensitivity by csgillespie on 2007-10-11 13:27:32 as ** along with 4 people aheilbut jjray chad_davis jooce
  • Worm epidemics in wireless ad hoc networks
    New Journal of Physics, Vol. 9 (2007)
    by Maziar Nekovee
    posted to no-tag by csgillespie on 2007-10-04 20:12:28 as **
  • Estimation of the number of extreme pathways for metabolic networks
    BMC Bioinformatics, Vol. 8 (27 September 2007), 363.
    by Matthew Yeung, Ines Thiele, Bernard O Palsson
    posted to no-tag by csgillespie on 2007-09-29 17:11:29 as **
  • Robust parameter estimation techniques for stochastic within-host macroparasite models
    pp. 419-430.
    by S Riley
    posted to moment-closure by csgillespie on 2007-09-27 20:11:40 as **
  • Novel bivariate moment-closure approximations
    Mathematical Biosciences, Vol. 208, No. 2. (August 2007), pp. 621-643.
    by Isthrinayagy Krishnarajah, Glenn Marion, Gavin Gibson
    posted to moment-closure by csgillespie on 2007-08-26 10:00:13 as **
  • Novel moment closure approximations in stochastic epidemics.
    Bull Math Biol, Vol. 67, No. 4. (July 2005), pp. 855-873.
    by I Krishnarajah, A Cook, G Marion, G Gibson
    posted to moment-closure by csgillespie on 2007-08-26 09:59:15 as ** along with 1 person and 1 group e2holmes Stoc_Proc_Ecology_WG
  • Simple stochastic birth and death models of genome evolution: was there enough time for us to evolve?
    Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1889-1900.
    by GP Karev, YI Wolf, EV Koonin
    posted to birth-death by csgillespie on 2007-08-16 20:59:20 as ** along with 1 person knaseanka
  • A method for estimating stochastic noise in large genetic regulatory networks
    Bioinformatics, Vol. 21, No. 2., 208.
    by David Orrell, Stephen Ramsey, Pedro d de Atauri, Hamid Bolouri
    posted to simulations stochastic by csgillespie on 2007-08-16 15:22:58 as ** along with 1 person cottrell
  • Modelling Biological Populations in Space and Time (Cambridge Studies in Mathematical Biology)
    (24 September 1993)
    by Eric Renshaw
    posted to immigration-death-process mathematical-modelling by csgillespie on 2007-08-15 21:33:42 as read
  • Discrete Event Modeling and Simulation in Systems Biology
    Journal of Simulation, Vol. 1, No. 2. (2007), pp. 81-96.
    by Roland Ewald, Carsten Maus, Arndt Rolfs, Adelinde M Uhrmacher
    posted to computer-simulation by csgillespie on 2007-08-15 21:31:52 as ** along with 1 person and 2 groups roland_ewald dIEMoSIRIS MoSi-Rostock
  • Stochastic Modelling for Systems Biology (Mathematical and Computational Biology)
    (18 April 2006)
    by Darren J Wilkinson
    posted to mathematical-modelling sbml stochastic by csgillespie on 2007-08-15 21:29:33 as read along with 2 people and 2 groups roland_ewald dherkova dIEMoSIRIS MoSi-Rostock
  • BASIS: an internet resource for network modelling
    Journal of Integrative Bioinformatics, Vol. 3, No. 2. (2006)
    by CS Gillespie, DJ Wilkinson, Shanley, CJ Proctor, RJ Boys, TBL Kirkwood
    posted to ageing basis python sbml web-services by csgillespie on 2007-08-15 21:03:44 as read
  • Towards an e-biology of ageing: integrating theory and data
    Nat Rev Mol Cell Biol, Vol. 4, No. 3. (March 2003), pp. 243-249.
    by Thomas B Kirkwood, Richard J Boys, Colin S Gillespie, Carole J Proctor, Daryl P Shanley, Darren J Wilkinson
    posted to ageing basis mathematical-modelling web-services by csgillespie on 2007-08-15 21:01:23 as read
  • A mathematical model of ageing in yeast
    Journal of Theoretical Biology, Vol. 229, No. 2. (21 July 2004), pp. 189-196.
    by Colin S Gillespie, Carole J Proctor, Richard J Boys, Daryl P Shanley, Darren J Wilkinson, Thomas B Kirkwood
    posted to ageing mathematical-modelling yeast by csgillespie on 2007-08-15 21:00:59 as read along with 1 person kristen
  • Modelling the actions of chaperones and their role in ageing
    Mechanisms of Ageing and Development, Vol. 126, No. 1. (January 2005), pp. 119-131.
    by Carole J Proctor, Csaba Soti, Richard J Boys, Colin S Gillespie, Daryl P Shanley, Darren J Wilkinson, Thomas B Kirkwood
    posted to ageing mathematical-modelling by csgillespie on 2007-08-15 21:00:31 as read
  • Handbook of the Biology of Aging, Sixth Edition (Handbook of the Biology of Aging)
    (20 December 2005)
    by Edward J Masoro, Austed N Steven
    posted to ageing basis mathematical-modelling by csgillespie on 2007-08-15 21:00:00 as read
  • The evolution of a batch-immigration death process subject to counts
    Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 461, No. 2057. (May 2005), pp. 1563-1581.
    by Colin S Gillespie, Eric Renshaw
    posted to immigration-death-process by csgillespie on 2007-08-15 20:59:10 as read
  • Tools for the SBML Community
    Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 628-629.
    by Colin S Gillespie, Darren J Wilkinson, Carole J Proctor, Daryl P Shanley, Richard J Boys, Thomas B Kirkwood
    posted to basis python sbml web-services by csgillespie on 2007-08-15 20:58:42 as read
  • Modelling the checkpoint response to telomere uncapping in budding yeast
    Journal of The Royal Society Interface, Vol. 4, No. 12. (22 February 2007), pp. 73-90.
    by CJ Proctor, DA Lydall, RJ Boys, CS Gillespie, DP Shanley, DJ Wilkinson, TBL Kirkwood
    posted to mathematical-modelling yeast by csgillespie on 2007-08-15 20:57:46 as read
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