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di caseybrown library [219 articles]

Articoli aggiunti di recente nella biblioteca di caseybrown .
  • Gene expression profiling by massively parallel sequencing
    Genome Res. (21 November 2007), gr.6984908.
    by Tatiana T Torres, Muralidhar Metta, Birgit Ottenwalder, Christian Schlotterer
  • Comparison of transcription regulatory interactions inferred from high-throughput methods: what do they reveal?
    Trends in Genetics, Vol. 24, No. 7. (July 2008), pp. 319-323.
    by S Balaji, Lakshminarayan M Iyer, Madan M Babu, L Aravind
    posted to transcription review network by caseybrown on 2008-07-08 16:17:56 as **
  • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    Genome Res. (11 June 2008), gr.079558.108.
    by John Marioni, Cristopher Mason, Shrikant Mane, Matthew Stephens, Yoav Gilad
  • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    Nature (18 May 2008)
    by Brian T Wilhelm, Samuel Marguerat, Stephen Watt, Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J Penkett, Jane Rogers, Jürg Bähler
  • Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
    Cell, Vol. 133, No. 3. (2 May 2008), pp. 523-536.
    by Ryan Lister, Ronan C O'Malley, Julian Tonti-Filippini, Brian D Gregory, Charles C Berry, Harvey A Millar, Joseph R Ecker
  • Mapping and quantifying mammalian transcriptomes by RNA-Seq.
    Nature methods (30 May 2008)
    by Ali Mortazavi, Brian A A Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold
  • Stem cell transcriptome profiling via massive-scale mRNA sequencing.
    Nature methods (30 May 2008)
    by Nicole Cloonan, Alistair R R R Forrest, Gabriel Kolle, Brooke B A B Gardiner, Geoffrey J J Faulkner, Mellissa K K Brown, Darrin F F Taylor, Anita L L Steptoe, Shivangi Wani, Graeme Bethel, Alan J J Robertson, Andrew C C Perkins, Stephen J J Bruce, Clarence C C Lee, Swati S S Ranade, Heather E E Peckham, Jonathan M M Manning, Kevin J J McKernan, Sean M M Grimmond
  • Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype
    Genome Biology, Vol. 9 (20 June 2008), R100.
    by Edward K Lobenhofer, Todd J Auman, Pamela E Blackshear, Gary A Boorman, Pierre R Bushel, Michael L Cunningham, Jennifer M Fostel, Kevin Gerrish, Alexandra N Heinloth, Richard D Irwin, David E Malarkey, Alex B Merrick, Stella O Sieber, Charles J Tucker, Sandra M Ward, Ralph E Wilson, Patrick Hurban, Raymond W Tennant, Richard S Paules
    posted to rat metabolism liver by caseybrown on 2008-07-08 03:46:12 as **
  • Combinatorial patterns of histone acetylations and methylations in the human genome
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 897-903.
    by Zhibin Wang, Chongzhi Zang, Jeffrey A Rosenfeld, Dustin E Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q Zhang, Keji Zhao
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
  • Estrogen receptor alpha (ESR1) gene amplification is frequent in breast cancer
    Nature Genetics, Vol. 39, No. 5. (08 April 2007), pp. 655-660.
    by Frederik Holst, Phillip R Stahl, Christian Ruiz, Olaf Hellwinkel, Zeenath Jehan, Marc Wendland, Annette Lebeau, Luigi Terracciano, Khawla Al-Kuraya, Fritz Jänicke, Guido Sauter, Ronald Simon
    posted to cnv cancer breast by caseybrown on 2008-07-08 03:37:29 as read along with 1 person jfr
  • Reply to “ESR1 gene amplification in breast cancer: a common phenomenon?”
    Nature Genetics, Vol. 40, No. 7., pp. 810-812.
    by Frederik Holst, Phillip Stahl, Olaf Hellwinkel, Ana-Maria Dancau, Antje Krohn, Laura Wuth, Christian Heupel, Annette Lebeau, Luigi Terracciano, Khawla Al-Kuraya, Fritz Jänicke, Guido Sauter, Ronald Simon
    posted to cnv cancer breast by caseybrown on 2008-07-08 03:36:53 as read
  • ESR1 gene amplification in breast cancer: a common phenomenon?
    Nature Genetics, Vol. 40, No. 7., pp. 809-810.
    by Jorge S Reis-Filho, Suzanne Drury, Maryou B Lambros, Caterina Marchio, Nichola Johnson, Rachael Natrajan, Janine Salter, Pauline Levey, Olivia Fletcher, Julian Peto, Alan Ashworth, Mitch Dowsett
    posted to cnv cancer breast by caseybrown on 2008-07-08 03:36:28 as read
  • ESR1 gene amplification in breast cancer: a common phenomenon?
    Nature Genetics, Vol. 40, No. 7., pp. 809-809.
    by Anne Vincent-Salomon, Virginie Raynal, Carlo Lucchesi, Nadège Gruel, Olivier Delattre
    posted to cnv cancer breast by caseybrown on 2008-07-08 03:36:01 as read
  • ESR1 gene amplification in breast cancer: a common phenomenon?
    Nature Genetics, Vol. 40, No. 7., pp. 807-808.
    by Hugo M Horlings, Anna Bergamaschi, Silje H Nordgard, Young H Kim, Wonshik Han, Dong-Young Noh, Keyan Salari, Simon A Joosse, Fabien Reyal, Ole C Lingjaerde, Vessela N Kristensen, Anne-Lise Børresen-Dale, Jonathan Pollack, Marc J van de Vijver
    posted to cnv cancer breast by caseybrown on 2008-07-08 03:35:35 as read
  • ESR1 gene amplification in breast cancer: a common phenomenon?
    Nature Genetics, Vol. 40, No. 7., pp. 806-807.
    by Lindsay A Brown, Jeremy Hoog, Suet-Feung Chin, Yu Tao, Abd A Zayed, Koei Chin, Andrew E Teschendorff, John F Quackenbush, John C Marioni, Samuel Leung, Charles M Perou, Torsten O Neilsen, Matthew Ellis, Joe W Gray, Philip S Bernard, David G Huntsman, Carlos Caldas
    posted to cnv cancer breast by caseybrown on 2008-07-08 03:34:57 as read
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
    posted to sequencing es_cell chip by caseybrown on 2008-07-03 23:21:06 as ** along with 1 person jjray
  • A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome
    Science (3 July 2008), 1160342.
    by Marc Sultan, Marcel H Schulz, Hugues Richard, Alon Magen, Andreas Klingenhoff, Matthias Scherf, Martin Seifert, Tatjana Borodina, Aleksey Soldatov, Dmitri Parkhomchuk, Dominic Schmidt, Sean O'Keeffe, Stefan Haas, Martin Vingron, Hans Lehrach, Marie-Laure Yaspo
  • Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 126-129.
    by Tony Y Tsai, Yoon S Choi, Wenzhe Ma, Joseph R Pomerening, Chao Tang, James E Ferrell
  • Phylogenetic Signal in the Eukaryotic Tree of Life
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123.
    by Michael J Sanderson
  • Calibrating the Performance of SNP Arrays for Whole-Genome Association Studies
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000109.
    by Ke Hao, Eric E Schadt, John D Storey
    posted to gwas genotyping eqtl by caseybrown on 2008-06-30 01:42:03 as ** along with 2 people Stew balicea
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
  • Estimating coverage and power for genetic association studies using near-complete variation data
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 841-843.
    by Tushar R Bhangale, Mark J Rieder, Deborah A Nickerson
    posted to gwas by caseybrown on 2008-06-27 00:46:03 as ** along with 2 people jyuh djkt
  • A Genome-Wide Gene Expression Signature of Environmental Geography in Leukocytes of Moroccan Amazighs
    PLoS Genet, Vol. 4, No. 4. (11 April 2008), e1000052.
    by Youssef Idaghdour, John D Storey, Sami J Jadallah, Greg Gibson
    posted to gxe eqtl by caseybrown on 2008-06-19 18:44:35 as **
  • Gene set enrichment in eQTL data identifies novel annotations and pathway regulators.
    PLoS genetics, Vol. 4, No. 5. (May 2008)
    by C Wu, DL Delano, N Mitro, SV Su, J Janes, P McClurg, S Batalov, GL Welch, J Zhang, AP Orth, JR Walker, RJ Glynne, MP Cooke, JS Takahashi, K Shimomura, A Kohsaka, J Bass, E Saez, T Wiltshire, AI Su
    posted to network eqtl by caseybrown on 2008-06-17 21:30:12 as ** along with 1 person thomaskelder
  • Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs).
    Genome Res, Vol. 17, No. 6. (June 2007), pp. 828-838.
    by Y Ruan, HS Ooi, SW Choo, KP Chiu, XD Zhao, KG Srinivasan, F Yao, CY Choo, J Liu, P Ariyaratne, WG Bin, VA Kuznetsov, A Shahab, WK Sung, G Bourque, N Palanisamy, CL Wei
  • Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing
    Nature Genetics, Vol. 40, No. 6. (27 April 2008), pp. 722-729.
    by Peter J Campbell, Philip J Stephens, Erin D Pleasance, Sarah O'Meara, Heng Li, Thomas Santarius, Lucy A Stebbings, Catherine Leroy, Sarah Edkins, Claire Hardy, Jon W Teague, Andrew Menzies, Ian Goodhead, Daniel J Turner, Christopher M Clee, Michael A Quail, Antony Cox, Clive Brown, Richard Durbin, Matthew E Hurles, Paul AW Edwards, Graham R Bignell, Michael R Stratton, Andrew P Futreal
    posted to sequencing cancer by caseybrown on 2008-06-12 21:59:16 as read along with 1 person chrisamiller
  • Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome.
    Science (27 September 2007)
    by Jan O O Korbel, Alexander Eckehart E Urban, Jason P P Affourtit, Brian Godwin, Fabian Grubert, Jan Fredrik F Simons, Philip M M Kim, Dean Palejev, Nicholas J J Carriero, Lei Du, Bruce E E Taillon, Zhoutao Chen, Andrea Tanzer, A C Eugenia C Saunders, Jianxiang Chi, Fengtang Yang, Nigel P P Carter, Matthew E E Hurles, Sherman M M Weissman, Timothy T T Harkins, Mark B B Gerstein, Michael Egholm, Michael Snyder
  • DNA sequencing: bench to bedside and beyond.
    Nucleic Acids Res (12 September 2007)
    by Clyde A A Hutchison
  • The influence of genetic variation on gene expression
    Genome Res., Vol. 17, No. 12. (1 December 2007), pp. 1707-1716.
    by Rohan B Williams, Eva K Chan, Mark J Cowley, Peter F Little
    posted to eqtl by caseybrown on 2008-06-12 21:30:04 as ** along with 6 people balicea giovanni ggorjan lp2 xingxu dmachugh
  • Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
    Genome Res. (19 February 2008), gr.7179508.
    by Ryan D Morin, Michael D O'Connor, Malachi Griffith, Florian Kuchenbauer, Allen Delaney, Anna-Liisa Prabhu, Yongjun Zhao, Helen Mcdonald, Thomas Zeng, Martin Hirst, Connie J Eaves, Marco A Marra
  • The new paradigm of flow cell sequencing
    Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 839-846.
    by Robert A Holt, Steven J Jones
  • A diversity profile of the human skin microbiota.
    Genome research (23 May 2008)
    by Elizabeth A A Grice, Heidi H H Kong, Gabriel Renaud, Alice C C Young, , Gerard G G Bouffard, Robert W W Blakesley, Tyra G G Wolfsberg, Maria L L Turner, Julia A A Segre
    posted to sequencing derm by caseybrown on 2008-06-06 19:02:04 as ** along with 3 people sconlan djkt aprasad
  • Microarray standard data set and figures of merit for comparing data processing methods and experiment designs
    Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 956-965.
    by Yudong D He, Hongyue Dai, Eric E Schadt, Guy Cavet, Stephen W Edwards, Sergey B Stepaniants, Sven Duenwald, Robert Kleinhanz, Allan R Jones, Daniel D Shoemaker, Roland B Stoughton
    posted to method expression_array by caseybrown on 2008-06-05 22:28:02 as **
  • The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    Nat Biotech, Vol. 24, No. 9. (2006), pp. 1151-1161.
  • PLoS Computational Biology: Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model
    posted to molevol indel by caseybrown on 2008-06-01 13:54:14 as read
  • Mind the Gaps: Evidence of Bias in Estimates of Multiple Sequence Alignments.
    Mol Biol Evol (20 August 2007)
    by Tanya Golubchik, Michael J J Wise, Simon Easteal, Lars S S Jermiin
    posted to molevol indel alignment by caseybrown on 2008-06-01 13:49:11 as ** along with 3 people zwang lilou dandaman
  • Human-specific insertions and deletions inferred from mammalian genome sequences
    Genome Res., Vol. 17, No. 1. (1 January 2007), pp. 16-22.
    by Feng-Chi Chen, Chueng-Jong Chen, Wen-Hsiung Li, Trees-Juen Chuang
  • Functional constraint and small insertions and deletions in the ENCODE regions of the human genome
    Genome Biology, Vol. 8 (04 September 2007), R180.
    by Taane G Clark, Toby Andrew, Gregory M Cooper, Elliot H Marguiles, James C Mullikin, David J Balding
    posted to molevol indel encode by caseybrown on 2008-06-01 13:45:57 as read along with 2 people aprasad ryanraaum
  • Mapping the Genetic Architecture of Gene Expression in Human Liver.
    PLoS biology, Vol. 6, No. 5. (6 May 2008)
    by Eric E E Schadt, Cliona Molony, Eugene Chudin, Ke Hao, Xia Yang, Pek Y Y Lum, Andrew Kasarskis, Bin Zhang, Susanna Wang, Christine Suver, Jun Zhu, Joshua Millstein, Solveig Sieberts, John Lamb, Debraj Guhathakurta, Jonathan Derry, John D D Storey, Iliana Avila-Campillo, Mark J J Kruger, Jason M M Johnson, Carol A A Rohl, Atila van Nas, Margarete Mehrabian, Thomas A A Drake, Aldons J J Lusis, Ryan C C Smith, F Peter P Guengerich, Stephen C C Strom, Erin Schuetz, Thomas H H Rushmore, Roger Ulrich
  • Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis
    BMC Bioinformatics, Vol. 9 (20 May 2008), 244.
    by Shameek Biswas, John D Storey, Joshua M Akey
    posted to method eqtl by caseybrown on 2008-05-27 15:02:38 as **
  • Genetic determinants of phenotypic diversity in humans
    Genome Biology, Vol. 9 (24 April 2008), 215.
    by Nazli G Rahim, Olivier Harismendy, Eric J Topol, Kelly A Frazer
    posted to genetics by caseybrown on 2008-05-27 00:11:45 as ** along with 1 person djkt
  • Mapping translocation breakpoints by next-generation sequencing.
    Genome Res (7 March 2008)
    by Wei Chen, Vera Kalscheu, Andreas Tzschach, Corinna Menzel, Reinhard Ullmann, Marcel Schulz, Fikret Erdogan, Na Li, Zofia Kijas, Ger Arkesteijn, Isidora Lopez L Pajares, Margret Goetz-Sothmann, Uwe Heinrich, Imma Rost, Andreas Dufke, Ute Grasshoff, Birgitta Glaeser G Glaeser, Martin Vingron, Hans Hilger H Ropers
    posted to sequencing by caseybrown on 2008-05-27 00:04:18 as read along with 1 person APRegier
  • A Polymorphism Within the G6PC2 Gene Is Associated with Fasting Plasma Glucose Levels
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1085-1088.
    by Nabila Bouatia-Naji, Ghislain Rocheleau, Leentje Van Lommel, Katleen Lemaire, Frans Schuit, Christine Cavalcanti-Proenca, Marion Marchand, Anna-Liisa Hartikainen, Ulla Sovio, Franck De Graeve, Johan Rung, Martine Vaxillaire, Jean Tichet, Michel Marre, Beverley Balkau, Jacques Weill, Paul Elliott, Marjo-Riitta Jarvelin, David Meyre, Constantin Polychronakos, Christian Dina, Robert Sladek, Philippe Froguel
    posted to metabolism by caseybrown on 2008-05-27 00:00:08 as ** along with 1 person booker
  • Cell Shape and Negative Links in Regulatory Motifs Together Control Spatial Information Flow in Signaling Networks
    Cell, Vol. 133, No. 4. (16 May 2008), pp. 666-680.
    by Susana R Neves, Panayiotis Tsokas, Anamika Sarkar, Elizabeth A Grace, Padmini Rangamani, Stephen M Taubenfeld, Cristina M Alberini, James C Schaff, Robert D Blitzer, Ion I Moraru, Ravi Iyengar
    posted to network by caseybrown on 2008-05-17 01:37:42 as **
  • A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
    Genome Res. (13 May 2008), gr.076463.108.
    by Anton Valouev, Jeffrey Ichikawa, Thaisan Tonthat, Jeremy Stuart, Swati Ranade, Heather Peckham, Kathy Zeng, Joel A Malek, Gina Costa, Kevin Mckernan, Arend Sidow, Andrew Fire, Steven M Johnson
  • Genome-Scale Proteomics Reveals Arabidopsis thaliana Gene Models and Proteome Dynamics
    Science (24 April 2008), 1157956.
    by Katja Baerenfaller, Jonas Grossmann, Monica A Grobei, Roger Hull, Matthias Hirsch-Hoffmann, Shaul Yalovsky, Philip Zimmermann, Ueli Grossniklaus, Wilhelm Gruissem, Sacha Baginsky
  • Design Logic of a Cannabinoid Receptor Signaling Network That Triggers Neurite Outgrowth
    Science, Vol. 320, No. 5878. (16 May 2008), pp. 903-909.
    by Kenneth D Bromberg, Avi Ma'ayan, Susana R Neves, Ravi Iyengar
    posted to network cisreg by caseybrown on 2008-05-15 23:42:10 as ** along with 2 people AlexanderPico waszak
  • Exposing the fitness contribution of duplicated genes
    Nat Genet, Vol. 40, No. 5. (May 2008), pp. 676-681.
    by Alexander Deluna, Kalin Vetsigian, Noam Shoresh, Matthew Hegreness, Maritrini Colon-Gonzalez, Sharon Chao, Roy Kishony
    posted to yeast molevol gene_duplication by caseybrown on 2008-05-07 00:00:09 as ** along with 1 person djkt
  • An embryonic stem cell–like gene expression signature in poorly differentiated aggressive human tumors
    Nature Genetics, Vol. 40, No. 5. (28 April 2008), pp. 499-507.
    by Ittai Ben-Porath, Matthew W Thomson, Vincent J Carey, Ruping Ge, George W Bell, Aviv Regev, Robert A Weinberg
    posted to transcription es_cell cancer by caseybrown on 2008-05-06 23:56:07 as read along with 1 person xingxu
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