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di cabbagesofdoom library [65 articles]

Articoli aggiunti di recente nella biblioteca di cabbagesofdoom ordinata per importanza .
  • The binary protein interactome of Treponema pallidum--the syphilis spirochete.
    PLoS ONE, Vol. 3, No. 5. (2008)
    by B Titz, SV Rajagopala, J Goll, R Häuser, MT McKevitt, T Palzkill, P Uetz
    posted to disease interactome networks ppi slim by cabbagesofdoom on 2008-06-02 10:12:37 as *****
  • notes Understanding eukaryotic linear motifs and their role in cell signaling and regulation.
    Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 6580-6603.
    by F Diella, N Haslam, C Chica, A Budd, S Michael, NP Brown, G Trave, TJ Gibson
    posted to elm motif review signalling slims by cabbagesofdoom on 2008-06-02 10:08:08 as ***** along with 1 person chad_davis
  • Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking.
    Proceedings of the National Academy of Sciences of the United States of America (29 May 2008)
    by Hocine Madaoui, Raphaël Guerois
    posted to evolution interface ppi prediction protein by cabbagesofdoom on 2008-06-02 10:03:45 as ***** along with 4 people phoenixzxl bicko chad_davis zwang
  • Evolution: A gene is born
    Nature Reviews Genetics, Vol. 9, No. 6., pp. 415-415.
    by Tanita Casci
    posted to evolution novel protein by cabbagesofdoom on 2008-05-20 10:31:16 as ***** along with 2 people zwang HugoMarcelo
  • A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
    BMC Bioinformatics, Vol. 9 (06 May 2008), 229.
    by Claudia Chica, Alberto Labarga, Cathryn M Gould, Rodrigo Lopez, Toby J Gibson
    posted to conservation elm evolution slim by cabbagesofdoom on 2008-05-12 10:59:30 as ***** along with 2 people biehl alanrw
  • An in Vivo Map of the Yeast Protein Interactome
    Science (8 May 2008), 1153878.
    by Kirill Tarassov, Vincent Messier, Christian R Landry, Stevo Radinovic, Mercedes M Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W Michnick
    posted to ppi yeast by cabbagesofdoom on 2008-05-12 10:33:40 as ***** along with 7 people phoenixzxl jyuh neils aubinhon brianb tmmurali grahamc
  • notes The dystrobrevin-binding protein 1 gene: features and networks
    Molecular Psychiatry, Vol. aop, No. current.
    by AY Guo, J Sun, BP Riley, DL Thiselton, KS Kendler, Z Zhao
    posted to interactome ppi protein by cabbagesofdoom on 2008-07-31 12:16:24 as ****
  • Protein Complex Evolution Does Not Involve Extensive Network Rewiring
    PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000132.
    by Teunis J van Dam, Berend Snel
    posted to complex conservation evolution human interactome ppi protein yeast by cabbagesofdoom on 2008-07-28 09:43:24 as **** along with 1 person chad_davis
  • Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology
    PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000029.
    by Karthik Devarajan
    posted to computational matrix by cabbagesofdoom on 2008-07-28 09:41:43 as **** along with 7 people aramesh2 roys bayesian bpcusack luispedro jyuh mikaelhuss
  • Use and misuse of the gene ontology annotations.
    Nature reviews. Genetics (13 May 2008)
    by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici
    posted to annotation database go review by cabbagesofdoom on 2008-06-18 14:50:31 as **** along with 20 people and 2 groups djkt jyuh aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko tmmurali renatomilani capitall marck rvosa bpcusack logics of knowledge FAB-lab
  • InteroPorc: Automated Inference of Highly Conserved Protein Interaction Networks.
    Bioinformatics (Oxford, England) (28 May 2008)
    by Magali Michaut, Samuel Kerrien, Luisa Montecchi-Palazzi, Franck Chauvat, Corinne Cassier-Chauvat, Jean-Christophe C Aude, Pierre Legrain
    posted to evolution interactome networks ppi prediction by cabbagesofdoom on 2008-06-02 10:13:45 as **** along with 3 people neils renatomilani cerca
  • notes The SH3 domain- a family of versatile peptide- and protein-recognition module.
    Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 4938-4952.
    by T Kaneko, L Li, SS Li
    posted to domain peptide sh3 slim specificity by cabbagesofdoom on 2008-06-02 10:10:46 as ****
  • notes Viral infection and human disease - insights from minimotifs.
    Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 6455-6471.
    by K Kadaveru, J Vyas, MR Schiller
    posted to disease function human motif peptide slim virus by cabbagesofdoom on 2008-06-02 10:09:33 as ****
  • De Novo Origination of a New Protein-Coding Gene in Saccharomyces cerevisiae.
    Genetics, Vol. 179, No. 1. (May 2008), pp. 487-496.
    by J Cai, R Zhao, H Jiang, W Wang
    posted to evolution novel protein yeast by cabbagesofdoom on 2008-05-27 14:08:44 as **** along with 2 people bpcusack msierk
  • What can we learn from the disrupted in schizophrenia 1 interactome: lessons for target identification and disease biology?
    Novartis Foundation symposium, Vol. 289 (2008)
    by LM Camargo, Q Wang, NJ Brandon
    posted to disease human interactome ppi schizophrenia by cabbagesofdoom on 2008-05-27 09:59:49 as ****
  • notes Domains mediate protein-protein interactions and nucleate protein assemblies.
    Handbook of experimental pharmacology, No. 186. (2008), pp. 383-405.
    by S Costa, G Cesareni
    posted to domain interactome networks ppi by cabbagesofdoom on 2008-05-22 11:43:31 as ****
  • Characterization of microRNA-regulated protein-protein interaction network.
    Proteomics, Vol. 8, No. 10. (19 May 2008), pp. 1975-1979.
    by Chun-Wei W Hsu, Hsueh-Fen F Juan, Hsuan-Cheng C Huang
    posted to mirna networks ppi regulation by cabbagesofdoom on 2008-05-22 10:52:38 as **** along with 2 people daforerog maralena
  • Improvisation in evolution of genes and genomes: whose structure is it anyway?
    Current opinion in structural biology (17 May 2008)
    by Boris E E Shakhnovich, Eugene I I Shakhnovich
    posted to evolution genes genome novel review by cabbagesofdoom on 2008-05-22 10:47:12 as **** along with 3 people zwang marck bpcusack
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to human interactome networks ppi by cabbagesofdoom on 2008-05-20 10:37:33 as **** along with 20 people zwang chrissp100 sanchezbuelna jyuh phoenixzxl tmmurali neils paolomarcatili mjoach xingxu Ema balicea marck friendpine brianb roys Evangelia dragonrez chad_davis bpcusack
  • Phylogenomic inference of protein molecular function.
    Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 6 (October 2005)
    by N Krishnamurthy, K Sjölander
    posted to function phylogenetics phylogenomics prediction protein by cabbagesofdoom on 2008-05-20 10:33:14 as ****
  • Cell biology: SUMO
    Nature, Vol. 452, No. 7188. (10 April 2008), pp. 709-711.
    by Erik Meulmeester, Frauke Melchior
    posted to elm motif review slim sumo by cabbagesofdoom on 2008-05-08 16:35:03 as **** along with 2 people cmzmasek nickpitman
  • Evolution and dynamics of protein interactions and networks
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Emmanuel D Levy, Jose B Pereira-Leal
    posted to networks ppi review by cabbagesofdoom on 2008-05-08 15:44:31 as **** along with 5 people paolomarcatili jyuh neils marck zdai
  • Moraxella catarrhalis binding to host cellular receptors is mediated by sequence-specific determinants not conserved among all UspA1 protein variants.
    Infection and immunity (4 August 2008)
    by Michael J J Brooks, Jennifer L L Sedillo, Nikki Wagner, Wei Wang, Ahmed S S Attia, Henry Wong, Cassie A A Laurence, Eric J J Hansen, Scott D D Gray-Owen
    posted to host interaction motif pathogen by cabbagesofdoom on 2008-08-08 08:35:31 as ***
  • Systems biology: On the cell cycle and its switches
    Nature, Vol. 454, No. 7202. (16 July 2008), pp. 288-289.
    by Silvia DM Santos, James E Ferrell
    posted to cell-cycle control systems-biology by cabbagesofdoom on 2008-07-16 21:28:43 as *** along with 2 people brianb reyez
  • TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
    Bioinformatics (Oxford, England), Vol. 19, No. 5. (22 March 2003), pp. 651-652.
    by G Pertea, X Huang, F Liang, V Antonescu, R Sultana, S Karamycheva, Y Lee, J White, F Cheung, B Parvizi, J Tsai, J Quackenbush
    posted to assembly est software by cabbagesofdoom on 2008-06-13 14:02:18 as ***
  • The current excitement about copy-number variation: how it relates to gene duplications and protein families.
    Current opinion in structural biology (27 May 2008)
    by Jan O O Korbel, Philip M M Kim, Xueying Chen, Alexander Eckehart E Urban, Sherman Weissman, Michael Snyder, Mark B B Gerstein
    posted to copy-number duplication evolution families variation by cabbagesofdoom on 2008-06-02 10:05:56 as *** along with 2 people Neeperando bpcusack
  • Molecular evolution of Cide family proteins: novel domain formation in early vertebrates and the subsequent divergence
    BMC Evolutionary Biology, Vol. 8 (23 May 2008), 159.
    by Congyang Wu, Yinxin Zhang, Zhirong Sun, Peng Li
    posted to domain evolution families protein by cabbagesofdoom on 2008-05-27 14:00:47 as ***
  • Characterizing positive and negative selection and their phylogenetic effects.
    Gene (8 April 2008)
    by Steven E E Massey, Alexander Churbanov, Shruti Rastogi, David A A Liberles
    posted to evolution phylogenetics selection by cabbagesofdoom on 2008-05-22 12:27:15 as ***
  • Pharmacogenomics of cardiovascular pharmacology: molecular network analysis in pleiotropic effects of statin - an experimental elucidation of the pharmacologic action from protein-protein interaction analysis.
    Journal of pharmacological sciences, Vol. 107, No. 1. (May 2008), pp. 15-19.
    by M Shiota, H Kusakabe, Y Hikita, T Nakao, Y Izumi, H Iwao
    posted to methods networks pharmacology ppi proteomics by cabbagesofdoom on 2008-05-22 11:49:03 as ***
  • PLoS ONE: Construction and Analysis of High-Complexity Ribosome Display Random Peptide Libraries
    PLoS One, Vol. 3, No. 5. (21 May 2008), e2092.
    by Li-Min Yang, Jing-Lin Wang, Lin Kang, Shan Gao, Yan-Hua Liu, Ting-Mao Hu
    posted to display libraries methods peptide ppi ribosome by cabbagesofdoom on 2008-05-22 09:27:07 as ***
  • Computational methods for protein identification from mass spectrometry data.
    PLoS computational biology, Vol. 4, No. 2. (February 2008)
    by L McHugh, JW Arthur
    posted to ms proteomics review by cabbagesofdoom on 2008-05-12 10:56:21 as *** along with 2 people jyuh gdb
  • Genome analysis of the platypus reveals unique signatures of evolution
    Nature, Vol. 453, No. 7192. (May 2008), pp. 175-183.
    posted to genome platypus by cabbagesofdoom on 2008-05-08 16:05:11 as *** along with 9 people pbull hpaces Tominator neils fhsantanna gjuggler ealloza natstreet lp2
  • Minimotif miner: a computational tool to investigate protein function, disease, and genetic diversity.
    Current protocols in protein science / editorial board, John E. Coligan ... [et al.], Vol. Chapter 2 (May 2007)
    by MR Schiller
    posted to database motif slim by cabbagesofdoom on 2008-05-08 16:03:43 as ***
  • Steps towards a repertoire of comprehensive maps of human protein interaction networks: the Human Proteotheque Initiative (HuPI).
    Biochemistry and cell biology = Biochimie et biologie cellulaire, Vol. 86, No. 2. (April 2008), pp. 149-156.
    by B Coulombe, M Blanchette, C Jeronimo
    posted to database human ppi by cabbagesofdoom on 2008-05-08 15:59:03 as *** along with 1 person jyuh
  • notes Discovering sequence motifs with arbitrary insertions and deletions.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by MC Frith, NF Saunders, B Kobe, TL Bailey
    posted to discovery elm motif prediction prosite slim software by cabbagesofdoom on 2008-05-08 15:34:40 as *** along with 6 people gjuggler Stew dquest neils Ema Evangelia
  • TMpro webserver and webservice: Transmembrane helix prediction through amino acid property analysis.
    Bioinformatics (30 August 2007)
    by Madhavi Ganapathiraju, Christopher Jon J Jursa, Hassan A A Karimi, Judith Klein-Seetharaman
    posted to prediction tm webserver by cabbagesofdoom on 2007-10-30 16:17:36 as *** along with 1 person and 1 group grahamc ParkinsonLab_at_MaRS
  • Reconstruction of ancestral FGLamide-type insect allatostatins: A novel approach to the study of allatostatin function and evolution.
    Journal of insect physiology, Vol. 54, No. 6. (June 2008), pp. 959-968.
    by EF Hult, CJ Weadick, BS Chang, SS Tobe
    posted to ancestral-sequence-reconstruction evolution by cabbagesofdoom on 2008-08-05 09:36:05 as **
  • Patterns of Positive Selection in Six Mammalian Genomes
    PLoS Genet, Vol. 4, No. 8. (2008), e1000144.
    by Carolin Kosiol, Tomáš Vinař, Rute R da Fonseca, Melissa J Hubisz, Carlos D Bustamante, Rasmus Nielsen, Adam Siepel
    posted to evolution genomics mammals selection by cabbagesofdoom on 2008-08-05 09:34:32 as ** along with 4 people bpcusack gjuggler djkt hdopazo
  • notes Identification and Rational Redesign of Peptide Ligands to CRIP1, A Novel Biomarker for Cancers
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000138.
    by Jihua Hao, Adrian W Serohijos, Gail Newton, Gina Tassone, Zuncai Wang, Dennis C Sgroi, Nikolay V Dokholyan, James P Basilion
    posted to cancer peptide phage-display by cabbagesofdoom on 2008-08-05 09:18:20 as **
  • Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality.
    PLoS computational biology, Vol. 4, No. 8. (August 2008)
    by E Zotenko, J Mestre, DP O'Leary, TM Przytycka
    posted to interactome networks ppi yeast by cabbagesofdoom on 2008-08-05 09:14:08 as ** along with 5 people and 1 group srp33 maralena shikin cerca tmmurali GeneGo
  • Distinct motifs in the chemokine receptor CCR7 regulate signal transduction, receptor trafficking and chemotaxis.
    Journal of cell science (29 July 2008)
    by Carolina Otero, Petra S S Eisele, Karin Schaeuble, Marcus Groettrup, Daniel F F Legler
    posted to motif receptor signalling slim by cabbagesofdoom on 2008-07-31 12:15:02 as **
  • How Well Does the HoT Score Reflect Sequence Alignment Accuracy?
    Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1576-1580.
    by Barry G Hall
    posted to alignment bioinformatics sequence by cabbagesofdoom on 2008-07-31 09:35:53 as ** along with 2 people and 1 group bpcusack stajich Berkeley Mycology
  • Local Function Conservation in Sequence and Structure Space
    PLoS Comput Biol, Vol. 4, No. 7. (4 July 2008), e1000105.
    by Nils Weinhold, Oliver Sander, Francisco S Domingues, Thomas Lengauer, Ingolf Sommer
    posted to conservation function prediction protein structure by cabbagesofdoom on 2008-07-07 09:39:04 as ** along with 1 person Ema
  • Alternative Promoters Influence Alternative Splicing at the Genomic Level
    PLoS ONE, Vol. 3, No. 6. (18 June 2008), e2377.
    by Dedong Xin, Landian Hu, Xiangyin Kong
    posted to genetics promoters splicing by cabbagesofdoom on 2008-06-19 09:12:51 as ** along with 2 people raistrick antonkratz
  • The sequence of the acidic repeat protein (arp) gene differentiates venereal from nonvenereal Treponema pallidum subspecies, and the gene has evolved under strong positive selection in the subspecies that causes syphilis.
    FEMS immunology and medical microbiology (12 June 2008)
    by Kristin N N Harper, Hsi Liu, Paolo S S Ocampo, Bret M M Steiner, Amy Martin, Keith Levert, Dongxia Wang, Madeline Sutton, George J J Armelagos
    posted to disease host motif parasite repeat slim treponema virus by cabbagesofdoom on 2008-06-18 16:02:23 as **
  • The interaction network of the chaperonin CCT
    The EMBO Journal, Vol. aop, No. current. (29 May 2008)
    by Carien Dekker, Peter C Stirling, Elizabeth A Mccormack, Heather Filmore, Angela Paul, Renee L Brost, Michael Costanzo, Charles Boone, Michel R Leroux, Keith R Willison
    posted to interactome networks ppi by cabbagesofdoom on 2008-06-02 10:04:35 as **
  • A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
    PLoS Computational Biology
    by SR Eddy
    posted to alignment analysis homology searching sequence by cabbagesofdoom on 2008-06-02 09:23:10 as ** along with 4 people reyez lp2 Ema bpcusack
  • Pharmacological interference with protein-protein interactions mediated by coiled-coil motifs.
    Handbook of experimental pharmacology, No. 186. (2008), pp. 461-482.
    by HM Strauss, S Keller
    posted to coiled coils ppi by cabbagesofdoom on 2008-05-29 09:24:59 as **
  • Targeting the human cancer pathway protein interaction network by structural genomics.
    Molecular & cellular proteomics : MCP (18 May 2008)
    by Yuanpeng Janet J Huang, Dehua Hang, Long Jason J Lu, Liang Tong, Mark B B Gerstein, Gaetano T T Montelione
    posted to cancer genomics networks ppi signalling by cabbagesofdoom on 2008-05-22 12:29:01 as ** along with 1 person carlk
  • Defining a Modular Signalling Network from the Fly Interactome
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Anais Baudot, Jean B Angelelli, Alain Guenoche, Bernard Jacq, Christine Brun
    posted to drosophila interactome networks ppi signalling by cabbagesofdoom on 2008-05-22 11:52:24 as ** along with 1 person gurkanbebek
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