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di cabbagesofdoom library [55 articles]

Articoli aggiunti di recente nella biblioteca di cabbagesofdoom .
  • Identification of putative functional motifs in viral proteins essential for human cytomegalovirus DNA replication.
    Virus genes (10 July 2008)
    by Heng-Giap G Woon, Gillian M Scott, King L Yiu, David H Miles, William D Rawlinson
    posted to virus prediction motif by cabbagesofdoom on 2008-07-17 10:39:28 as read
  • Systems biology: On the cell cycle and its switches
    Nature, Vol. 454, No. 7202. (16 July 2008), pp. 288-289.
    by Silvia DM Santos, James E Ferrell
    posted to systems-biology control cell-cycle by cabbagesofdoom on 2008-07-16 21:28:43 as ***
  • notes Developmental biology: Serpent clocks tick faster
    Nature, Vol. 454, No. 7202. (16 July 2008), pp. 282-283.
    by Freek J Vonk, Michael K Richardson
    posted to snake evolution development animal by cabbagesofdoom on 2008-07-16 21:25:21 as read
  • Local Function Conservation in Sequence and Structure Space
    PLoS Comput Biol, Vol. 4, No. 7. (4 July 2008), e1000105.
    by Nils Weinhold, Oliver Sander, Francisco S Domingues, Thomas Lengauer, Ingolf Sommer
    posted to structure protein prediction function conservation by cabbagesofdoom on 2008-07-07 09:39:04 as ** along with 1 person Ema
  • Alternative Promoters Influence Alternative Splicing at the Genomic Level
    PLoS ONE, Vol. 3, No. 6. (18 June 2008), e2377.
    by Dedong Xin, Landian Hu, Xiangyin Kong
    posted to splicing promoters genetics by cabbagesofdoom on 2008-06-19 09:12:51 as ** along with 1 person raistrick
  • The sequence of the acidic repeat protein (arp) gene differentiates venereal from nonvenereal Treponema pallidum subspecies, and the gene has evolved under strong positive selection in the subspecies that causes syphilis.
    FEMS immunology and medical microbiology (12 June 2008)
    by Kristin N N Harper, Hsi Liu, Paolo S S Ocampo, Bret M M Steiner, Amy Martin, Keith Levert, Dongxia Wang, Madeline Sutton, George J J Armelagos
    posted to virus treponema slim repeat parasite motif host disease by cabbagesofdoom on 2008-06-18 16:02:23 as **
  • Use and misuse of the gene ontology annotations.
    Nature reviews. Genetics (13 May 2008)
    by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici
    posted to review go database annotation by cabbagesofdoom on 2008-06-18 14:50:31 as **** along with 18 people and 1 group marck capitall realzhang gjuggler A_Olympia fpattyn cmzmasek djkt renatomilani giovenko tmmurali ptrobajo RamuAnandakrishnan roys carlk mariakmejia aheilbut jyuh logics of knowledge
  • Human disease: Joining the dots from SNPs to proteins
    Nat Rev Genet, Vol. 9, No. 7. (July 2008), pp. 496-496.
    by Louisa Flintoft
    posted to snp protein disease by cabbagesofdoom on 2008-06-18 14:45:08 as read along with 1 person marck
  • TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
    Bioinformatics (Oxford, England), Vol. 19, No. 5. (22 March 2003), pp. 651-652.
    by G Pertea, X Huang, F Liang, V Antonescu, R Sultana, S Karamycheva, Y Lee, J White, F Cheung, B Parvizi, J Tsai, J Quackenbush
    posted to software est assembly by cabbagesofdoom on 2008-06-13 14:02:18 as ***
  • InteroPorc: Automated Inference of Highly Conserved Protein Interaction Networks.
    Bioinformatics (Oxford, England) (28 May 2008)
    by Magali Michaut, Samuel Kerrien, Luisa Montecchi-Palazzi, Franck Chauvat, Corinne Cassier-Chauvat, Jean-Christophe C Aude, Pierre Legrain
    posted to prediction ppi networks interactome evolution by cabbagesofdoom on 2008-06-02 10:13:45 as **** along with 2 people renatomilani neils
  • The binary protein interactome of Treponema pallidum--the syphilis spirochete.
    PLoS ONE, Vol. 3, No. 5. (2008)
    by B Titz, SV Rajagopala, J Goll, R Häuser, MT McKevitt, T Palzkill, P Uetz
    posted to slim ppi networks interactome disease by cabbagesofdoom on 2008-06-02 10:12:37 as *****
  • notes The SH3 domain- a family of versatile peptide- and protein-recognition module.
    Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 4938-4952.
    by T Kaneko, L Li, SS Li
    posted to specificity slim sh3 peptide domain by cabbagesofdoom on 2008-06-02 10:10:46 as ****
  • notes Viral infection and human disease - insights from minimotifs.
    Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 6455-6471.
    by K Kadaveru, J Vyas, MR Schiller
    posted to virus slim peptide motif human function disease by cabbagesofdoom on 2008-06-02 10:09:33 as ****
  • notes Understanding eukaryotic linear motifs and their role in cell signaling and regulation.
    Frontiers in bioscience : a journal and virtual library, Vol. 13 (2008), pp. 6580-6603.
    by F Diella, N Haslam, C Chica, A Budd, S Michael, NP Brown, G Trave, TJ Gibson
    posted to slims signalling review motif elm by cabbagesofdoom on 2008-06-02 10:08:08 as ***** along with 1 person chad_davis
  • The current excitement about copy-number variation: how it relates to gene duplications and protein families.
    Current opinion in structural biology (27 May 2008)
    by Jan O O Korbel, Philip M M Kim, Xueying Chen, Alexander Eckehart E Urban, Sherman Weissman, Michael Snyder, Mark B B Gerstein
    posted to variation families evolution duplication copy-number by cabbagesofdoom on 2008-06-02 10:05:56 as *** along with 1 person Neeperando
  • The interaction network of the chaperonin CCT
    The EMBO Journal, Vol. aop, No. current. (29 May 2008)
    by Carien Dekker, Peter C Stirling, Elizabeth A Mccormack, Heather Filmore, Angela Paul, Renee L Brost, Michael Costanzo, Charles Boone, Michel R Leroux, Keith R Willison
    posted to ppi networks interactome by cabbagesofdoom on 2008-06-02 10:04:35 as **
  • Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking.
    Proceedings of the National Academy of Sciences of the United States of America (29 May 2008)
    by Hocine Madaoui, Raphaël Guerois
    posted to protein prediction ppi interface evolution by cabbagesofdoom on 2008-06-02 10:03:45 as ***** along with 3 people chad_davis bicko phoenixzxl
  • A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation
    PLoS Computational Biology
    by SR Eddy
    posted to sequence searching homology analysis alignment by cabbagesofdoom on 2008-06-02 09:23:10 as ** along with 3 people Ema lp2 reyez
  • Pharmacological interference with protein-protein interactions mediated by coiled-coil motifs.
    Handbook of experimental pharmacology, No. 186. (2008), pp. 461-482.
    by HM Strauss, S Keller
    posted to ppi coils coiled by cabbagesofdoom on 2008-05-29 09:24:59 as **
  • De Novo Origination of a New Protein-Coding Gene in Saccharomyces cerevisiae.
    Genetics, Vol. 179, No. 1. (May 2008), pp. 487-496.
    by J Cai, R Zhao, H Jiang, W Wang
    posted to yeast protein novel evolution by cabbagesofdoom on 2008-05-27 14:08:44 as ****
  • Molecular evolution of Cide family proteins: novel domain formation in early vertebrates and the subsequent divergence
    BMC Evolutionary Biology, Vol. 8 (23 May 2008), 159.
    by Congyang Wu, Yinxin Zhang, Zhirong Sun, Peng Li
    posted to protein families evolution domain by cabbagesofdoom on 2008-05-27 14:00:47 as ***
  • What can we learn from the disrupted in schizophrenia 1 interactome: lessons for target identification and disease biology?
    Novartis Foundation symposium, Vol. 289 (2008)
    by LM Camargo, Q Wang, NJ Brandon
    posted to schizophrenia ppi interactome human disease by cabbagesofdoom on 2008-05-27 09:59:49 as ****
  • Targeting the human cancer pathway protein interaction network by structural genomics.
    Molecular & cellular proteomics : MCP (18 May 2008)
    by Yuanpeng Janet J Huang, Dehua Hang, Long Jason J Lu, Liang Tong, Mark B B Gerstein, Gaetano T T Montelione
    posted to signalling ppi networks genomics cancer by cabbagesofdoom on 2008-05-22 12:29:01 as ** along with 1 person carlk
  • Characterizing positive and negative selection and their phylogenetic effects.
    Gene (8 April 2008)
    by Steven E E Massey, Alexander Churbanov, Shruti Rastogi, David A A Liberles
    posted to selection phylogenetics evolution by cabbagesofdoom on 2008-05-22 12:27:15 as ***
  • Defining a Modular Signalling Network from the Fly Interactome
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Anais Baudot, Jean B Angelelli, Alain Guenoche, Bernard Jacq, Christine Brun
    posted to signalling ppi networks interactome drosophila by cabbagesofdoom on 2008-05-22 11:52:24 as ** along with 1 person gurkanbebek
  • Pharmacogenomics of cardiovascular pharmacology: molecular network analysis in pleiotropic effects of statin - an experimental elucidation of the pharmacologic action from protein-protein interaction analysis.
    Journal of pharmacological sciences, Vol. 107, No. 1. (May 2008), pp. 15-19.
    by M Shiota, H Kusakabe, Y Hikita, T Nakao, Y Izumi, H Iwao
    posted to proteomics ppi pharmacology networks methods by cabbagesofdoom on 2008-05-22 11:49:03 as ***
  • notes Domains mediate protein-protein interactions and nucleate protein assemblies.
    Handbook of experimental pharmacology, No. 186. (2008), pp. 383-405.
    by S Costa, G Cesareni
    posted to ppi networks interactome domain by cabbagesofdoom on 2008-05-22 11:43:31 as ****
  • Characterization of microRNA-regulated protein-protein interaction network.
    Proteomics, Vol. 8, No. 10. (19 May 2008), pp. 1975-1979.
    by Chun-Wei W Hsu, Hsueh-Fen F Juan, Hsuan-Cheng C Huang
    posted to regulation ppi networks mirna by cabbagesofdoom on 2008-05-22 10:52:38 as ****
  • Improvisation in evolution of genes and genomes: whose structure is it anyway?
    Current opinion in structural biology (17 May 2008)
    by Boris E E Shakhnovich, Eugene I I Shakhnovich
    posted to review novel genome genes evolution by cabbagesofdoom on 2008-05-22 10:47:12 as **** along with 2 people marck zwang
  • PLoS ONE: Construction and Analysis of High-Complexity Ribosome Display Random Peptide Libraries
    PLoS One, Vol. 3, No. 5. (21 May 2008), e2092.
    by Li-Min Yang, Jing-Lin Wang, Lin Kang, Shan Gao, Yan-Hua Liu, Ting-Mao Hu
    posted to ribosome ppi peptide methods libraries display by cabbagesofdoom on 2008-05-22 09:27:07 as ***
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to ppi networks interactome human by cabbagesofdoom on 2008-05-20 10:37:33 as **** along with 18 people chad_davis Evangelia balicea marck paolomarcatili sanchezbuelna xingxu mjoach jyuh chrissp100 zwang roys brianb friendpine Ema neils tmmurali phoenixzxl
  • Analyzing networks with VisANT.
    Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 8 (December 2004)
    by Z Hu, J Mellor, C DeLisi
    posted to visualisation software ppi online networks by cabbagesofdoom on 2008-05-20 10:35:52 as **
  • Using the KEGG database resource.
    Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 1 (October 2005)
    by KF Aoki, M Kanehisa
    posted to pathways database by cabbagesofdoom on 2008-05-20 10:34:51 as **
  • Searching, viewing, and visualizing data in the Biomolecular Interaction Network Database (BIND).
    Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 8 (January 2006)
    by RC Willis, CW Hogue
    posted to ppi database by cabbagesofdoom on 2008-05-20 10:34:05 as **
  • Phylogenomic inference of protein molecular function.
    Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 6 (October 2005)
    by N Krishnamurthy, K Sjölander
    posted to protein prediction phylogenomics phylogenetics function by cabbagesofdoom on 2008-05-20 10:33:14 as ****
  • Evolution: A gene is born
    Nature Reviews Genetics, Vol. 9, No. 6., pp. 415-415.
    by Tanita Casci
    posted to protein novel evolution by cabbagesofdoom on 2008-05-20 10:31:16 as ***** along with 1 person zwang
  • The McDonald-Kreitman Test and Slightly Deleterious Mutations
    Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1007-1015.
    by Jane Charlesworth, Adam Eyre-Walker
    posted to selection evolution by cabbagesofdoom on 2008-05-12 11:03:16 as ** along with 4 people and 1 group gjuggler Stew stajich stevanspringer Berkeley Mycology
  • A tree-based conservation scoring method for short linear motifs in multiple alignments of protein sequences
    BMC Bioinformatics, Vol. 9 (06 May 2008), 229.
    by Claudia Chica, Alberto Labarga, Cathryn M Gould, Rodrigo Lopez, Toby J Gibson
    posted to slim evolution elm conservation by cabbagesofdoom on 2008-05-12 10:59:30 as ***** along with 2 people alanrw biehl
  • Computational methods for protein identification from mass spectrometry data.
    PLoS computational biology, Vol. 4, No. 2. (February 2008)
    by L McHugh, JW Arthur
    posted to review proteomics ms by cabbagesofdoom on 2008-05-12 10:56:21 as *** along with 1 person jyuh
  • An in Vivo Map of the Yeast Protein Interactome
    Science (8 May 2008), 1153878.
    by Kirill Tarassov, Vincent Messier, Christian R Landry, Stevo Radinovic, Mercedes M Molina, Igor Shames, Yelena Malitskaya, Jackie Vogel, Howard Bussey, Stephen W Michnick
    posted to yeast ppi by cabbagesofdoom on 2008-05-12 10:33:40 as ***** along with 7 people tmmurali aubinhon grahamc jyuh brianb neils phoenixzxl
  • Drosophila unleashed: The 12-genome update of the genetic power horse has been released
    Heredity, Vol. aop, No. current.
    by C Schlötterer
    posted to review genome drosophila by cabbagesofdoom on 2008-05-08 16:40:26 as read
  • The role of multiple hydrogen-bonding groups in specific alcohol binding sites in proteins: insights from structural studies of LUSH.
    Journal of molecular biology, Vol. 376, No. 5. (7 March 2008), pp. 1360-1376.
    by AB Thode, SW Kruse, JC Nix, DN Jones
    posted to lush alcohol-binding alcohol by cabbagesofdoom on 2008-05-08 16:37:14 as **
  • Cell biology: SUMO
    Nature, Vol. 452, No. 7188. (10 April 2008), pp. 709-711.
    by Erik Meulmeester, Frauke Melchior
    posted to sumo slim review motif elm by cabbagesofdoom on 2008-05-08 16:35:03 as **** along with 2 people cmzmasek nickpitman
  • Broad phylogenomic sampling improves resolution of the animal tree of life
    Nature (05 March 2008)
    by Casey W Dunn, Andreas Hejnol, David Q Matus, Kevin Pang, William E Browne, Stephen A Smith, Elaine Seaver, Greg W Rouse, Matthias Obst, Gregory D Edgecombe, Martin V Sørensen, Steven HD Haddock, Andreas Schmidt-Rhaesa, Akiko Okusu, Reinhardt M Kristensen, Ward C Wheeler, Mark Q Martindale, Gonzalo Giribet
    posted to tree phylogenetics of life evolution est by cabbagesofdoom on 2008-05-08 16:32:42 as ** along with 3 people bayesian biomcgary cmzmasek
  • Genome structure and emerging evidence of an incipient sex chromosome in Populus
    Genome Res. (6 February 2008), gr.7076308.
    by Tongming Yin, Stephen P Difazio, Lee E Gunter, Xinye Zhang, Michell M Sewell, Scott A Woolbright, Gery J Allan, Collin T Kelleher, Carl J Douglas, Mingxiu Wang, Gerald A Tuskan
    posted to sex populus evolution by cabbagesofdoom on 2008-05-08 16:10:13 as ** along with 3 people and 1 group stajich natstreet yoonk Berkeley Mycology
  • Genome analysis of the platypus reveals unique signatures of evolution
    Nature, Vol. 453, No. 7192. (May 2008), pp. 175-183.
    posted to platypus genome by cabbagesofdoom on 2008-05-08 16:05:11 as *** along with 9 people pbull Tominator ealloza hpaces lp2 natstreet gjuggler fhsantanna neils
  • Minimotif miner: a computational tool to investigate protein function, disease, and genetic diversity.
    Current protocols in protein science / editorial board, John E. Coligan ... [et al.], Vol. Chapter 2 (May 2007)
    by MR Schiller
    posted to slim motif database by cabbagesofdoom on 2008-05-08 16:03:43 as ***
  • TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.
    Bioinformatics (Oxford, England) (23 April 2008)
    by Gábor E E Tusnády, Lajos Kalmár, Hédi Hegyi, Péter Tompa, István Simon
    posted to tm motif domain database by cabbagesofdoom on 2008-05-08 16:01:29 as ** along with 1 person niallhaslam
  • Steps towards a repertoire of comprehensive maps of human protein interaction networks: the Human Proteotheque Initiative (HuPI).
    Biochemistry and cell biology = Biochimie et biologie cellulaire, Vol. 86, No. 2. (April 2008), pp. 149-156.
    by B Coulombe, M Blanchette, C Jeronimo
    posted to ppi human database by cabbagesofdoom on 2008-05-08 15:59:03 as *** along with 1 person jyuh
  • Evolution and dynamics of protein interactions and networks
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Emmanuel D Levy, Jose B Pereira-Leal
    posted to review ppi networks by cabbagesofdoom on 2008-05-08 15:44:31 as **** along with 4 people marck paolomarcatili neils jyuh
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