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di brianb library [184 articles]

Articoli aggiunti di recente nella biblioteca di brianb .
  • A Fast SEQUEST Cross Correlation Algorithm
    J. Proteome Res. (6 September 2008)
    by Jimmy K Eng, Bernd Fischer, Jonas Grossmann, Michael J Maccoss
    posted to proteomics fdr bioinformatics by brianb on 2008-09-06 14:57:36 as **
  • Stable Isotope Labeling Tandem Mass Spectrometry (SILT): Integration with Peptide Identification and Extension to Data-Dependent Scans
    J. Proteome Res. (6 September 2008)
    by Donald L Elbert, Kwasi G Mawuenyega, Evan A Scott, Kristin R Wildsmith, Randall J Bateman
    posted to quantitation proteomics bioinformatics by brianb on 2008-09-06 14:56:38 as **
  • Identification of Four Novel Types of in Vitro Protein Modifications
    J. Proteome Res. (4 September 2008)
    by Gang Xing, Junmei Zhang, Yue Chen, Yingming Zhao
    posted to ptm proteomics by brianb on 2008-09-05 23:08:02 as ** along with 1 person neils
  • High-Efficiency Microarray Printer Using Fused-Silica Capillary Tube Printing Pins
    Anal. Chem. (3 September 2008)
    by Steve M Clark, Gregory E Hamilton, Robert A Nordmeyer, Donald Uber, Earl W Cornell, Nils Brown, Richard Segraves, Randy Davis, Donna G Albertson, Daniel Pinkel
    posted to proteomics arrays by brianb on 2008-09-04 01:08:22 as ** along with 1 person jyuh
  • Assessment of serum proteomics to detect large colon adenomas.
    Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, Vol. 17, No. 8. (August 2008), pp. 2188-2193.
    by DF Ransohoff, C Martin, WS Wiggins, BA Hitt, TO Keku, JA Galanko, RS Sandler
    posted to bias plasma proteomics by brianb on 2008-08-30 23:26:13 as **
  • Cancer screening: a mathematical model relating secreted blood biomarker levels to tumor sizes.
    PLoS medicine, Vol. 5, No. 8. (19 August 2008)
    by AM Lutz, JK Willmann, FV Cochran, P Ray, SS Gambhir
    posted to cancer diganostic plasma by brianb on 2008-08-30 04:00:44 as **
  • Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses
    PROTEOMICS, Vol. 8, No. 14. (2008), pp. 2791-2797.
    by Alexander Scherl, Yihsuan S Tsai, Scott A Shaffer, David R Goodlett
    posted to bioinformatics fdr proteomics by brianb on 2008-08-29 01:13:48 as ** along with 1 person nedwards
  • Ten Commandments: Lessons from the Enzymology of DNA Replication
    J. Bacteriol., Vol. 182, No. 13. (1 July 2000), pp. 3613-3618.
    by Arthur Kornberg
    posted to no-tag by brianb on 2008-08-28 02:21:18 as **
  • A Quantitative Proteomic Approach for Identification of Potential Biomarkers in Hepatocellular Carcinoma
    J. Proteome Res. (21 August 2008)
    by Raghothama Chaerkady, HC Harsha, Anuradha Nalli, Marjan Gucek, Perumal Vivekanandan, Javed Akhtar, Robert N Cole, Jessica Simmers, Richard D Schulick, Sujay Singh, Michael Torbenson, Akhilesh Pandey, Paul J Thuluvath
    posted to cancer proteomics by brianb on 2008-08-28 02:05:39 as **
  • Cell surface proteomics identifies molecules functionally linked to tumor cell intravasation
    J. Biol. Chem. (24 July 2008), M803337200.
    by Erin M Conn, Mark A Madsen, Benjamin F Cravatt, Wolfram Ruf, Elena I Deryugina, James P Quigley
    posted to cancer proteomics quantitation by brianb on 2008-08-28 01:58:18 as **
  • TandTRAQ: an open-source tool for integrated protein identification and quantitation.
    Bioinformatics (Oxford, England), Vol. 23, No. 24. (15 December 2007), pp. 3394-3396.
    by T Laderas, C Bystrom, D McMillen, G Fan, S McWeeney
    posted to bioinformatics itraq proteomics quantitation by brianb on 2008-08-27 23:32:54 as ** along with 1 person jyuh
  • Calibrating E-values for MS2 database search methods
    Biology Direct, Vol. 2 (05 November 2007), 26.
    by Gelio Alves, Aleksey Y Ogurtsov, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to bioinformatics fdr proteomics by brianb on 2008-08-27 23:31:08 as ** along with 1 person nedwards
  • Comparison of Mascot and X!Tandem Performance for Low and High Accuracy Mass Spectrometry and the Development of an Adjusted Mascot Threshold
    Mol Cell Proteomics, Vol. 7, No. 5. (1 May 2008), pp. 962-970.
    by Markus Brosch, Sajani Swamy, Tim Hubbard, Jyoti Choudhary
    posted to bioinformatics fdr proteomics by brianb on 2008-08-27 23:30:05 as ** along with 1 person olberd
  • Detection of co-eluted peptides using database search methods
    Biology Direct, Vol. 3 (02 July 2008), 27.
    by Gelio Alves, Aleksey Y Ogurtsov, Siwei Kwok, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to bioinformatics chromatography fdr proteomics by brianb on 2008-08-27 23:23:58 as **
  • A robust linear regression based algorithm for automated evaluation of peptide identifications from shotgun proteomics by use of reversed-phase liquid chromatography retention time
    BMC Bioinformatics, Vol. 9 (19 August 2008), 347.
    by Hua Xu, Lanhao Yang, Michael A Freitas
    posted to bioinformatics chromatography fdr proteomics by brianb on 2008-08-27 23:19:45 as **
  • X!!Tandem, an Improved Method for Running X!Tandem in Parallel on Collections of Commodity Computers
    J. Proteome Res., Vol. 7, No. 1. (4 January 2008), pp. 293-299.
    by Robert D Bjornson, Nicholas J Carriero, Christopher Colangelo, Mark Shifman, Kei-Hoi Cheung, Perry L Miller, Kenneth Williams
    posted to bioinformatics proteomics by brianb on 2008-08-27 22:39:08 as **
  • Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra
    Mol Cell Proteomics (14 August 2008), M800103-MCP200.
    by Sangtae Kim, Nitin Gupta, Nuno Bandeira, Pavel A Pevzner
    posted to bioinformatics proteomics by brianb on 2008-08-27 19:42:50 as **
  • Precursor-Ion Mass Re-Estimation Improves Peptide Identification on Hybrid Instruments
    J. Proteome Res. (16 August 2008)
    by Roland Luethy, Darren E Kessner, Jonathan E Katz, Brendan Maclean, Robert Grothe, Kian Kani, Vitor Faça, Sharon Pitteri, Samir Hanash, David B Agus, Parag Mallick
    posted to bioinformatics proteomics by brianb on 2008-08-17 22:57:36 as **
  • Immobilized Metal Affinity Chromatography Revisited: pH/Acid Control toward High Selectivity in Phosphoproteomics
    J. Proteome Res. (16 August 2008)
    by Chia-Feng Tsai, Yi-Ting Wang, Yet-Ran Chen, Chen-Yu Lai, Pei-Yi Lin, Kuan-Ting Pan, Jeou-Yuan Chen, Kay-Hooi Khoo, Yu-Ju Chen
    posted to phosphorylation proteomics by brianb on 2008-08-17 22:57:24 as ** along with 1 person neils
  • Quantitative analysis of HER2-mediated effects on HER2 and epidermal growth factor receptor endocytosis: distribution of homo- and heterodimers depends on relative HER2 levels.
    The Journal of biological chemistry, Vol. 278, No. 26. (27 June 2003), pp. 23343-23351.
    by BS Hendriks, LK Opresko, HS Wiley, D Lauffenburger
    posted to cancer interaction modeling by brianb on 2008-08-17 22:53:55 as **
  • Modeling the effects of HER/ErbB1-3 coexpression on receptor dimerization and biological response.
    Biophys J, Vol. 90, No. 11. (1 June 2006), pp. 3993-4009.
    by H Shankaran, HS Wiley, H Resat
    posted to cancer interaction by brianb on 2008-08-17 22:51:54 as ** along with 1 person pjasper
  • Expression of p95HER2, a Truncated Form of the HER2 Receptor, and Response to Anti-HER2 Therapies in Breast Cancer
    Journal of the National Cancer Institute, Vol. 99, No. 8. (18 April 2007), pp. 628-638.
    by Scaltriti, Maurizio, Rojo, Federico, Ocana, Alberto, Anido, Judit, Guzman, Marta, Cortes, Javier, Di Cosimo, Serena, Matias-Guiu, Xavier, Ramon, Santiago, Arribas, Joaquin, Baselga, Jose
    posted to cancer interaction by brianb on 2008-08-17 22:50:16 as **
  • Rationale for a phase II trial of pertuzumab, a HER-2 dimerization inhibitor, in patients with non-small cell lung cancer.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 12, No. 14 Pt 2. (15 July 2006)
    by BE Johnson, PA Jänne
    posted to cancer interaction by brianb on 2008-08-17 22:49:40 as **
  • Transphosphorylation of kinase-dead HER3 and breast cancer progression: a new standpoint or an old concept revisited?
    Breast Cancer Research, Vol. 9 (19 October 2007), 111.
    by Javier A Menendez, Ruth Lupu
    posted to cancer interaction phosphorylation by brianb on 2008-08-17 22:46:14 as **
  • Mechanism of action of anti-HER2 monoclonal antibodies: scientific update on trastuzumab and 2C4.
    Advances in experimental medicine and biology, Vol. 532 (2003), pp. 253-268.
    by J Albanell, J Codony, A Rovira, B Mellado, P Gascón
    posted to cancer interaction by brianb on 2008-08-17 22:45:25 as **
  • ZD1839, a specific epidermal growth factor receptor (EGFR) tyrosine kinase inhibitor, induces the formation of inactive EGFR/HER2 and EGFR/HER3 heterodimers and prevents heregulin signaling in HER2-overexpressing breast cancer cells.
    Clin Cancer Res, Vol. 9, No. 4. (April 2003), pp. 1274-1283.
    by J Anido, P Matar, J Albanell, M Guzmán, F Rojo, J Arribas, S Averbuch, J Baselga
    posted to cancer interaction by brianb on 2008-08-17 22:38:10 as ** along with 1 person pjasper
  • 2C4, a monoclonal antibody against HER2, disrupts the HER kinase signaling pathway and inhibits ovarian carcinoma cell growth.
    Cancer, Vol. 104, No. 12. (15 December 2005), pp. 2701-2708.
    by N Takai, A Jain, N Kawamata, LM Popoviciu, JW Said, S Whittaker, I Miyakawa, DB Agus, HP Koeffler
    posted to cancer interaction by brianb on 2008-08-17 22:35:47 as ** along with 1 person pjasper
  • Trastuzumab (herceptin), a humanized anti-Her2 receptor monoclonal antibody, inhibits basal and activated Her2 ectodomain cleavage in breast cancer cells.
    Cancer research, Vol. 61, No. 12. (15 June 2001), pp. 4744-4749.
    by MA Molina, J Codony-Servat, J Albanell, F Rojo, J Arribas, J Baselga
    posted to cancer interaction by brianb on 2008-08-17 22:33:50 as **
  • Peptide vaccines of the HER-2/neu dimerization loop are effective in inhibiting mammary tumor growth in vivo.
    Journal of immunology (Baltimore, Md. : 1950), Vol. 179, No. 1. (1 July 2007), pp. 472-482.
    by SD Allen, JT Garrett, SV Rawale, AL Jones, G Phillips, G Forni, JC Morris, RG Oshima, PT Kaumaya
    posted to cancer interaction by brianb on 2008-08-17 22:09:05 as **
  • Differential regulation of tumor angiogenesis by distinct ErbB homo- and heterodimers.
    Molecular biology of the cell, Vol. 13, No. 11. (November 2002), pp. 4029-4044.
    by L Yen, N Benlimame, ZR Nie, D Xiao, T Wang, AE Al Moustafa, H Esumi, J Milanini, NE Hynes, G Pages, MA Alaoui-Jamali
    posted to cancer interaction by brianb on 2008-08-17 22:06:05 as **
  • DIABLA: A New Screening Method for the Discovery of Protein Targets
    J. Proteome Res. (16 August 2008)
    by Robbie Montgomery, Hanna Shay, Matthew Mccarroll, Luke Tolley
    posted to diganostic electrophoresis proteomics by brianb on 2008-08-17 21:56:53 as **
  • A General Definition and Nomenclature for Alternative Splicing Events
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000147.
    by Michael Sammeth, Sylvain Foissac, Roderic Guigó
    posted to genomics splicing by brianb on 2008-08-14 20:52:18 as ** along with 4 people Ema bootsy jm12 wutongbin
  • Nonlinear Fitting Method for Determining Local False Discovery Rates from Decoy Database Searches
    J. Proteome Res. (14 August 2008)
    by Wilfred H Tang, Ignat V Shilov, Sean L Seymour
    posted to fdr proteomics by brianb on 2008-08-14 15:44:00 as **
  • Novel polyamine coating providing non-covalent deactivation and reversed electroosmotic flow of fused-silica capillaries for capillary electrophoresis
    Journal of Chromatography A, Vol. 1003, No. 1-2. (27 June 2003), pp. 217-221.
    by Emilia Hardenborg, Aida Zuberovic, Sara Ullsten, Lennart Söderberg, Eva Heldin, Karin E Markides
    posted to electrophoresis by brianb on 2008-08-13 23:10:23 as **
  • A polyamine coating for enhanced capillary electrophoresis-electrospray ionization-mass spectrometry of proteins and peptides
    ELECTROPHORESIS, Vol. 25, No. 13. (2004), pp. 2090-2099.
    by Sara Ullsten, Aida Zuberovic, Magnus Wetterhall, Emilia Hardenborg, Karin E Markides, Jonas Bergquist
    posted to electrophoresis by brianb on 2008-08-13 23:09:24 as **
  • A simplified multidimensional approach for analysis of complex biological samples: on-line LC-CE-MS
    Analyst, Vol. 131, No. 7. (2006), pp. 791-798.
    by Sara K Bergstrom, Andreas P Dahlin, Margareta Ramstrom, Marit Andersson, Karin E Markides, Jonas Bergquist
    posted to chromatography electrophoresis proteomics by brianb on 2008-08-13 22:58:19 as **
  • Assessing the Dynamic Range and Peak Capacity of Nanoflow LC−FAIMS−MS on an Ion Trap Mass Spectrometer for Proteomics
    Anal. Chem. (12 August 2008)
    by Jesse D Canterbury, Xianhua Yi, Michael R Hoopmann, Michael J Maccoss
    posted to chromatography faims proteomics by brianb on 2008-08-13 22:51:23 as **
  • Fully Integrated Glass Microfluidic Device for Performing High-Efficiency Capillary Electrophoresis and Electrospray Ionization Mass Spectrometry
    Anal. Chem. (13 August 2008)
    by JS Mellors, V Gorbounov, RS Ramsey, JM Ramsey
    posted to electrophoresis proteomics by brianb on 2008-08-13 22:34:27 as **
  • Identification of c-Src Tyrosine Kinase Substrates Using Mass Spectrometry and Peptide Microarrays
    J. Proteome Res. (13 August 2008)
    by Ramars Amanchy, Jun Zhong, Henrik Molina, Raghothama Chaerkady, Akiko Iwahori, Dario E Kalume, Mads Grønborg, Jos Joore, Leslie Cope, Akhilesh Pandey
    posted to arrays phosphorylation proteomics silac by brianb on 2008-08-13 22:18:58 as **
  • Interlaboratory Performance of a Microarray-Based Gene Expression Test to Determine Tissue of Origin in Poorly Differentiated and Undifferentiated Cancers
    J Mol Diagn, Vol. 10, No. 1. (1 January 2008), pp. 67-77.
    by Catherine I Dumur, Maureen Lyons-Weiler, Christin Sciulli, Carleton T Garrett, Iris Schrijver, Tara K Holley, Juan Rodriguez-Paris, Jonathan R Pollack, James L Zehnder, Melissa Price, Jill M Hagenkord, Ted C Rigl, Ljubomir J Buturovic, Glenda G Anderson, Federico A Monzon
    posted to cancer diganostic genomics by brianb on 2008-08-13 05:18:01 as **
  • PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i14-20.
    by Chia-Ying Yang, Chao-Hui Chang, Ya-Ling Yu, Tsu-Chun E Lin, Sheng-An Lee, Chueh-Chuan Yen, Jinn-Moon Yang, Jin-Mei Lai, Yi-Ren Hong, Tzu-Ling Tseng, Kun-Mao Chao, Chi-Ying F Huang
    posted to interaction phosphorylation proteomics by brianb on 2008-08-11 05:31:20 as ** along with 3 people Yanno renatomilani neils
  • Gain and loss of phosphorylation sites in human cancer
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i241-247.
    by Predrag Radivojac, Peter H Baenziger, Maricel G Kann, Matthew E Mort, Matthew W Hahn, Sean D Mooney
    posted to cancer phosphorylation proteomics by brianb on 2008-08-11 05:30:46 as ** along with 1 person neils
  • A quantitative atlas of mitotic phosphorylation.
    Proceedings of the National Academy of Sciences of the United States of America (31 July 2008)
    by Noah Dephoure, Chunshui Zhou, Judit Villén, Sean A A Beausoleil, Corey E E Bakalarski, Stephen J J Elledge, Steven P P Gygi
    posted to phosphorylation proteomics by brianb on 2008-08-08 15:16:06 as ** along with 2 people jyuh renatomilani
  • A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 112-123.
    by David J Pagliarini, Sarah E Calvo, Betty Chang, Sunil A Sheth, Scott B Vafai, Shao-En Ong, Geoffrey A Walford, Canny Sugiana, Avihu Boneh, William K Chen, David E Hill, Marc Vidal, James G Evans, David R Thorburn, Steven A Carr, Vamsi K Mootha
    posted to proteomics sysbio by brianb on 2008-08-08 15:07:01 as ** along with 4 people neils ptrobajo raiyar mdstobbe
  • Metabolic profiling of the human response to a glucose challenge reveals distinct axes of insulin sensitivity.
    Molecular systems biology, Vol. 4 (2008)
    by O Shaham, R Wei, TJ Wang, C Ricciardi, GD Lewis, RS Vasan, SA Carr, R Thadhani, RE Gerszten, VK Mootha
    posted to metabolomics sysbio by brianb on 2008-08-08 15:01:18 as ** along with 1 person sg45653
  • Systems biology: On the cell cycle and its switches
    Nature, Vol. 454, No. 7202. (16 July 2008), pp. 288-289.
    by Silvia DM Santos, James E Ferrell
    posted to modeling network sysbio by brianb on 2008-08-08 14:58:53 as ** along with 2 people reyez cabbagesofdoom
  • A portrait of tissue phosphoprotein stability in the clinical tissue procurement process.
    Molecular & cellular proteomics : MCP (30 July 2008)
    by Virginia A A Espina, Kirsten H H Edmiston, Michael Heiby, Mariaelena Pierobon, Manuela Sciro, Barbara Merritt, Stacey Banks, Jianghong Deng, Amy J J Vanmeter, David H H Geho, Lucia Pastore, Joel Sennesh, Emanuel F F Petricoin, Lance A A Liotta
    posted to phosphorylation proteomics tissue by brianb on 2008-08-08 14:57:06 as **
  • The impact of microRNAs on protein output
    Nature (30 July 2008)
    by Daehyun Baek, Judit Villã©n, Chanseok Shin, Fernando D Camargo, Steven P Gygi, David P Bartel
    posted to mirna proteomics by brianb on 2008-08-08 14:56:11 as ** along with 10 people giovenko mtagaya megraw djkt emptyhb erel10 maralena ajaymalik caizhiqiang gdb
  • The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins.
    Proteomics (31 July 2008)
    by Boumediene Soufi, Florian Gnad, Peter Ruhdal R Jensen, Dina Petranovic, Matthias Mann, Ivan Mijakovic, Boris Macek
    posted to phosphorylation prokaryote proteomics by brianb on 2008-08-08 14:51:22 as **
  • Practical Implementation of 2D HPLC Scheme with Accurate Peptide Retention Prediction in Both Dimensions for High-Throughput Bottom-Up Proteomics
    Anal. Chem. (8 August 2008)
    by Ravi C Dwivedi, Vic Spicer, Michael Harder, Mihaela Antonovici, Werner Ens, Kenneth G Standing, John A Wilkins, Oleg V Krokhin
    posted to chromatography proteomics by brianb on 2008-08-08 14:48:15 as **
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