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di aprasad library [520 articles]

Articoli aggiunti di recente nella biblioteca di aprasad .
  • Genome Size Reduction in the Chicken has Involved Massive Loss of Ancestral Protein-Coding Genes.
    Molecular biology and evolution (26 September 2008)
    by Austin L L Hughes, Robert Friedman
    posted to genome_size evolution coding chicken by aprasad on 2008-10-06 19:09:18 as **
  • Motif Evaluation by Leave-one-out Scoring
    Computational Intelligence and Bioinformatics and Computational Biology, 2006. CIBCB '06. 2006 IEEE Symposium on (2006), pp. 1-7.
    by Audrey Girouard, Noah W Smith, Donna K Slonim
    posted to motif methods algorithm by aprasad on 2008-10-01 16:39:54 as **
  • Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced their earliest radiations.
    BMC Evolutionary Biology, Vol. 8 (27 May 2008), 162.
    by Bjorn M Hallstrom, Axel Janke
    posted to tree phylogenomics phylogenetics mammal coding by aprasad on 2008-09-30 01:09:32 as **
  • Intronic Alus Influence Alternative Splicing
    PLoS Genet, Vol. 4, No. 9. (2008), e1000204.
    by Galit Lev-Maor, Oren Ram, Eddo Kim, Noa Sela, Amir Goren, Erez Y Levanon, Gil Ast
    posted to splicing repeats exon alu by aprasad on 2008-09-26 22:52:33 as ** along with 1 person djkt
  • Optimal Data Partitioning and a Test Case for Ray-Finned Fishes (Actinopterygii) Based on Ten Nuclear Loci
    Systematic Biology, Vol. 57, No. 4. (August 2008), pp. 519-539.
    by Chenhong Li, Guoqing Lu, Guillermo Orti
    posted to protein phylogenetics partitioning congruence by aprasad on 2008-09-22 21:23:39 as **
  • On the Distributions of Bootstrap Support and Posterior Distributions for a Star Tree
    Systematic Biology, Vol. 57, No. 4. (2008), pp. 602-612.
    by Edward Susko
    posted to star_paradox phylogenetics bootstrap bayesian by aprasad on 2008-09-22 21:07:11 as **
  • Probabilistic Phylogenetic Inference with Insertions and Deletions
    PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172.
    by Elena Rivas, Sean R Eddy
    posted to phylogenetics methods indel by aprasad on 2008-09-22 20:39:31 as ** along with 4 people druvus djkt gjuggler emptyhb
  • Phylogenetic Signal, Evolutionary Process, and Rate
    Systematic Biology, Vol. 57, No. 4. (2008), pp. 591-601.
    by Liam J Revell, Luke J Harmon, David C Collar
    posted to substitution_rate signal phylogenetics phylogenetic_accuracy by aprasad on 2008-09-22 20:34:46 as ** along with 1 person and 1 group ljharmon Rosenblum-Harmon Lab Papers
  • Evolutionary dynamics of intron size, genome size, and physiological correlates in archosaurs.
    The American naturalist, Vol. 160, No. 5. (November 2002), pp. 539-552.
    by E Waltari, SV Edwards
    posted to genome_size flying_dna bird by aprasad on 2008-09-22 20:30:35 as **
  • F-Seq: A Feature Density Estimator for High-Throughput Sequence Tags.
    Bioinformatics (Oxford, England) (10 September 2008)
    by Alan P P Boyle, Justin Guinney, Gregory E E Crawford, Terrence S S Furey
    posted to tools tag sequence bed by aprasad on 2008-09-15 02:37:16 as **
  • Impact of increased character sampling on the phylogeny of Cetartiodactyla (Mammalia): combined analysis including fossils
    Cladistics, Vol. 24, No. 4. (2008), pp. 397-442.
    by Maureen A O'Leary, John Gatesy
    posted to tree morphology mammal cetartiodactyla by aprasad on 2008-09-12 22:52:28 as **
  • The opossum genome: insights and opportunities from an alternative mammal.
    Genome research, Vol. 18, No. 8. (August 2008), pp. 1199-1215.
    by PB Samollow
    posted to opossum genome by aprasad on 2008-09-12 22:46:00 as **
  • Genome size and wing parameters in passerine birds.
    Proceedings. Biological sciences / The Royal Society (2 September 2008)
    by Chandler B B Andrews, Stuart A A Mackenzie, T Ryan R Gregory
    posted to genome_size flying_dna bird by aprasad on 2008-09-09 15:21:25 as **
  • Phylogenetic Inference Using Whole Genomes
    Annual Review of Genomics and Human Genetics, Vol. 9, No. 1. (2008), pp. 217-231.
    by Bruce Rannala, Ziheng Yang
    posted to review phylogenomics phylogenetics methods incongruence genomics by aprasad on 2008-09-04 17:04:51 as ** along with 3 people druvus gjuggler zwang
  • CpG dinucleotides and the mutation rate of non-CpG DNA.
    Genome research (7 August 2008)
    by Jean-Claude C Walser, Loïc Ponger, Anthony V V Furano
    posted to substitution_rate mutation_rate human genomics cpg chimp by aprasad on 2008-09-03 21:07:01 as ** along with 1 person bpcusack
  • Evolution of the SEC1 gene in New World monkey lineages (Primates, Platyrrhini).
    Genetics and molecular research : GMR, Vol. 7, No. 3. (2008), pp. 663-678.
    by BN Borges, TS Paiva, ML Harada
    posted to single_gene platyrrhini phylogenetics indel by aprasad on 2008-09-02 16:48:19 as **
  • Phylogenetic insights into the pace and pattern of plant genome size evolution.
    Genome dynamics, Vol. 4 (2008), pp. 57-68.
    by CE Grover, JS Hawkins, JF Wendel
    posted to review plant genome_size by aprasad on 2008-09-02 16:42:40 as **
  • Direct Estimation of the Mitochondrial DNA Mutation Rate in Drosophila melanogaster
    PLoS Biology, Vol. 6, No. 8. (1 August 2008), e204.
    by Cathy Haag-Liautard, Nicole Coffey, David Houle, Michael Lynch, Brian Charlesworth, Peter D Keightley
    posted to drosophila mitochondria mutation_rate by aprasad on 2008-08-26 22:27:24 as ** along with 1 person djkt
  • Overdispersion of the molecular clock varies between yeast, Drosophila and mammals
    Genetics (27 May 2008), genetics.108.089185.
    by Trevor Bedford, Ilan Wapinski, Daniel L Hartl
    posted to molecular_clock overdispersion population_genetics by aprasad on 2008-08-26 22:24:43 as ** along with 2 people and 1 group stajich djkt Berkeley Mycology
  • Reduced purifying selection prevails over positive selection in human copy number variant evolution.
    Genome research (7 August 2008)
    by Duc-Quang Q Nguyen, Caleb P P Webber, Jayne Hehir-Kwa, Rolph Pfundt, Joris Veltman, Chris P P Ponting
    posted to cnv evolution genome genome_evolution genomics human selection by aprasad on 2008-08-19 22:52:06 as ** along with 1 person bpcusack
  • Selective Constraints in Experimentally Defined Primate Regulatory Regions
    PLoS Genet, Vol. 4, No. 8. (2008), e1000157.
    by Daniel J Gaffney, Ran Blekhman, Jacek Majewski
    posted to cns regulatory selection by aprasad on 2008-08-15 20:10:22 as ** along with 7 people and 2 groups alhufton djkt bpcusack pradiptaray caseybrown maximilianh cisevol BergmanLab cis-regulatory-evolution
  • Mitogenomic relationships of placental mammals and molecular estimates of their divergences.
    Gene, Vol. 421, No. 1-2. (15 September 2008), pp. 37-51.
    by U Arnason, JA Adegoke, A Gullberg, EH Harley, A Janke, M Kullberg
    posted to mammal mitochondria time_tree tree by aprasad on 2008-08-13 20:43:43 as **
  • Segment-based multiple sequence alignment
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i187-192.
    by Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Doring, Cedric Notredame, Knut Reinert
    posted to alignment methods msa tools by aprasad on 2008-08-13 18:59:33 as ** along with 6 people zwang Ema APRegier djkt groepl chad_davis
  • Subdivision in an ancestral species creates asymmetry in gene trees.
    Molecular biology and evolution (9 August 2008)
    by Montgomery Slatkin, Joshua L L Pollack
    posted to phylogenetics model lineage_sorting incongruence horizontal_gene_transfer by aprasad on 2008-08-13 16:56:30 as **
  • Comparative analysis of testis protein evolution in rodents
    Genetics (9 August 2008), genetics.107.085902.
    by Leslie M Turner, Edward B Chuong, Hopi E Hoekstra
    posted to evolution protein rodents selection by aprasad on 2008-08-11 16:22:58 as ** along with 2 people djkt dchughes
  • Genomic medicine in Mexico: Initial steps and the road ahead.
    Genome research, Vol. 18, No. 8. (August 2008), pp. 1191-1198.
    by G Jimenez-Sanchez, I Silva-Zolezzi, A Hidalgo, S March
    posted to genomics mexico by aprasad on 2008-08-07 22:08:30 as **
  • Genome size evolution: Within-species variation in genome size
    Heredity, Vol. aop, No. current.
    by C Biémont
    posted to comment genome_size intraspecifc_variation by aprasad on 2008-08-03 20:54:47 as ** along with 1 person aramata
  • NcDNAlign: Plausible multiple alignments of non-protein-coding genomic sequences.
    Genomics (27 May 2008)
    by Dominic Rose, Jana Hertel, Kristin Reiche, Peter F F Stadler, Jörg Hackermüller
    posted to alignment methods msa tools by aprasad on 2008-07-30 16:16:50 as ** along with 1 person maximilianh
  • Reduced Number of Ribosomal Sites in Bats: Evidence for a Mechanism to Contain Genome Size
    Journal of Mammalogy, Vol. 73, No. 4. (1992), pp. 847-858.
    by Robert J Baker, Mary Maltbie, James G Owen, Meredith J Hamilton, Robert D Bradley
    posted to bat flying_dna genome_evolution genome_size by aprasad on 2008-07-28 18:57:09 as **
  • The Chromosomal Polymorphism Linked to Variation in Social Behavior in the White-Throated Sparrow (Zonotrichia albicollis) Is a Complex Rearrangement and Suppressor of Recombination
    Genetics, Vol. 179, No. 3. (1 July 2008), pp. 1455-1468.
    by James W Thomas, Mario Caceres, Joshua J Lowman, Caroline B Morehouse, Meghan E Short, Erin L Baldwin, Donna L Maney, Christa L Martin
    posted to chromosome evolution rearrangement thomas by aprasad on 2008-07-23 19:11:43 as **
  • Comparative physical mapping: Universal overgo hybridization probe design and BAC library hybridization.
    Methods in molecular biology (Clifton, N.J.), Vol. 422 (2008), pp. 119-132.
    by JW Thomas
    posted to bac_mapping methods overgo by aprasad on 2008-07-20 21:28:28 as **
  • Coexpression of Linked Genes in Mammalian Genomes Is Generally Disadvantageous
    Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1555-1565.
    by Ben-Yang Liao, Jianzhi Zhang
    posted to evolution expression linkage selection by aprasad on 2008-07-17 00:31:56 as ** along with 3 people djkt zwang bpcusack
  • Automated mapping of large-scale chromatin structure in ENCODE.
    Bioinformatics (Oxford, England) (30 June 2008)
    by Heng Lian, William A A Thompson, Robert Thurman, John A A Stamatoyannopoulos, William Stafford S Noble, Charles E E Lawrence
    posted to chromatin dnasei regulatory by aprasad on 2008-07-17 00:24:20 as ** along with 3 people dakelley djkt timflutre
  • Characterization of pairwise and multiple sequence alignment errors.
    Gene (3 June 2008)
    by Giddy Landan, Dan Graur
    posted to alignment alignment_error phylogenetic_accuracy simulation by aprasad on 2008-07-14 15:48:01 as **
  • Cell size does not always correspond to genome size: Phylogenetic analysis in geckos questions optimal DNA theories of genome size evolution.
    Zoology (Jena, Germany) (30 June 2008)
    by Zuzana Starostová, Lukáš Kratochvíl, Martin Flajšhans
    posted to genome_size nucleotypic_effect by aprasad on 2008-07-08 16:33:08 as **
  • Phylogenetic Signal in the Eukaryotic Tree of Life
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123.
    by Michael J Sanderson
    posted to phylogenetics phylogenetic_signal phylogenomics by aprasad on 2008-07-07 20:05:55 as ** along with 7 people and 3 groups dchughes stajich gulsacan jlgreen caseybrown djkt marck Berkeley Mycology Green Lab iSEEM
  • Assessing the Evolutionary Impact of Amino Acid Mutations in the Human Genome
    PLoS Genet, Vol. 4, No. 5. (30 May 2008), e1000083.
    by Adam R Boyko, Scott H Williamson, Amit R Indap, Jeremiah D Degenhardt, Ryan D Hernandez, Kirk E Lohmueller, Mark D Adams, Steffen Schmidt, John J Sninsky, Shamil R Sunyaev, Thomas J White, Rasmus Nielsen, Andrew G Clark, Carlos D Bustamante
    posted to aa fitness mutation_rate population_genetics selection by aprasad on 2008-06-30 19:27:26 as ** along with 1 person bpcusack
  • EVOLUTION: Building the Tree of Life, Genome by Genome
    Science, Vol. 320, No. 5884. (27 June 2008), pp. 1716-1717.
    by Elizabeth Pennisi
    posted to phylogenomics review by aprasad on 2008-06-27 23:43:07 as ** along with 3 people and 2 groups renatomilani gulsacan jlgreen Green Lab iSEEM
  • Phylogenetic incongruence in the Drosophila melanogaster species group.
    Molecular phylogenetics and evolution, Vol. 43, No. 3. (June 2007), pp. 1138-1150.
    by A Wong, JD Jensen, JE Pool, CF Aquadro
    posted to incongruence phylogenetics by aprasad on 2008-06-27 19:23:40 as **
  • A Mixed Branch Length Model of Heterotachy Improves Phylogenetic Accuracy
    Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1054-1066.
    by Bryan Kolaczkowski, Joseph W Thornton
    posted to evolution model phylogenetics simulation by aprasad on 2008-06-26 21:39:09 as **
  • Fast Evolution of Core Promoters in Primate Genomes
    Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1239-1244.
    by Han Liang, Yeong-Shin Lin, Wen-Hsiung Li
    posted to evolution primate promoter substitution_rate by aprasad on 2008-06-26 21:31:30 as ** along with 2 people and 1 group cisevol Stew cis-regulatory-evolution
  • jModelTest: Phylogenetic Model Averaging
    Mol Biol Evol, Vol. 25, No. 7. (1 July 2008), pp. 1253-1256.
    by David Posada
    posted to methods model_choice tools by aprasad on 2008-06-26 21:29:49 as **
  • Morphology and Placental Mammal Phylogeny
    Systematic Biology, Vol. 57, No. 3. (2008), pp. 499-503.
    by Mark S Springer, Robert W Meredith, Eduardo Eizirik, Emma Teeling, William J Murphy
    posted to mammal morphology phylogenetics tree by aprasad on 2008-06-24 21:17:43 as **
  • Hemiplasy: A New Term in the Lexicon of Phylogenetics
    Systematic Biology, Vol. 57, No. 3. (2008), pp. 503-507.
    by John C Avise, Terence J Robinson
    posted to lineage_sorting by aprasad on 2008-06-24 21:13:18 as **
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
    posted to alignment indel methods by aprasad on 2008-06-23 19:05:48 as ** along with 22 people and 3 groups marti bpcusack chad_davis hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
  • primetv: A viewer for reconciled trees
    BMC Bioinformatics, Vol. 8 (07 May 2007), 148.
    by Bengt Sennblad, Eva Schreil, Ann-Charlotte B Sonnhammer, Jens Lagergren, Lars Arvestad
    posted to methods tools tree_visualization by aprasad on 2008-06-19 22:45:22 as ** along with 1 person gendlerk
  • A mobile element based phylogeny of Old World monkeys
    Molecular Phylogenetics and Evolution, Vol. 37, No. 3. (December 2005), pp. 872-880.
    by Jinchuan Xing, Hui Wang, Kyudong Han, David A Ray, Cheney H Huang, Leona G Chemnick, Caro-Beth Stewart, Todd R Disotell, Oliver A Ryder, Mark A Batzer
    posted to catarrhini phylogenetics rare_genomic_characters tree by aprasad on 2008-06-19 22:19:37 as **
  • Moving primate genomics beyond the chimpanzee genome
    Trends in Genetics, Vol. 21, No. 9. (September 2005), pp. 511-517.
    by Morris Goodman, Lawrence I Grossman, Derek E Wildman
    posted to primate review tree by aprasad on 2008-06-19 22:16:40 as ****
  • More genes or more taxa? The relative contribution of gene number and taxon number to phylogenetic accuracy.
    Molecular biology and evolution, Vol. 22, No. 5. (May 2005), pp. 1337-1344.
    by A Rokas, SB Carroll
    posted to phylogenetic_accuracy phylogenetics phylogenomics taxon_sampling by aprasad on 2008-06-19 21:49:06 as **
  • Molecular phylogeny and divergence times of Malagasy tenrecs: influence of data partitioning and taxon sampling on dating analyses.
    BMC Evolutionary Biology, Vol. 8 (31 March 2008), 102.
    by Celine Poux, Ole Madsen, Julian Glos, Wilfried W de Jong, Miguel Vences
    posted to afrotheria methods time time_tree by aprasad on 2008-06-19 20:24:39 as **
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