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di alokm library [48 articles]

Articoli aggiunti di recente nella biblioteca di alokm .
  • A genomic code for nucleosome positioning
    Nature, Vol. 442, No. 7104. (19 July 2006), pp. 772-778.
    by Eran Segal, Yvonne Fondufe-Mittendorf, Lingyi Chen, Annchristine Thåström, Yair Field, Irene K Moore, Ji-Ping Z Wang, Jonathan Widom
    posted to no-tag by alokm on 2007-01-14 18:17:41 as ***** along with 17 people and 10 groups natstreet dakelley kentsis aalibes marcius indigoviolet dchughes cconboy neveaire kengg johncumbers joshuashen joepickrell GustavoLacerda rschulz inesdesantiago sonjadaniela Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience G4ID BioinfoCIPF SGU-CIPF Plantandetc Genetics-of-Gambling
  • Transcriptional regulatory networks in Saccharomyces cerevisiae.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804.
    by TI Lee, NJ Rinaldi, F Robert, DT Odom, Z Bar-Joseph, GK Gerber, NM Hannett, CT Harbison, CM Thompson, I Simon, J Zeitlinger, EG Jennings, HL Murray, DB Gordon, B Ren, JJ Wyrick, JB Tagne, TL Volkert, E Fraenkel, DK Gifford, RA Young
    posted to no-tag by alokm on 2006-11-30 19:26:37 as read along with 26 people and 2 groups camster snuppepuppan icases forluvoft ggrot opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki dquest siebert dbk-lab TNT
  • Transcriptional regulatory code of a eukaryotic genome
    Nature, Vol. 431, No. 7004. (2004), pp. 99-104.
    by Christopher T Harbison, Benjamin D Gordon, Tong I Lee, Nicola J Rinaldi, Kenzie D Macisaac, Timothy W Danford, Nancy M Hannett, Jean-Bosco Tagne, David B Reynolds, Jane Yoo, Ezra G Jennings, Julia Zeitlinger, Dmitry K Pokholok, Manolis Kellis, Alex P Rolfe, Ken T Takusagawa, Eric S Lander, David K Gifford, Ernest Fraenkel, Richard A Young
    posted to no-tag by alokm on 2006-11-30 19:14:22 as read along with 24 people and 8 groups tuck chad_davis lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
  • Navigating gene expression using microarrays--a technology review.
    Nat Cell Biol, Vol. 3, No. 8. (August 2001)
    by A Schulze, J Downward
    posted to no-tag by alokm on 2006-11-30 15:55:54 as * along with 7 people and 2 groups ziquje numata balicea dchughes jo_davies ale mcox G4ID Genetics-of-Gambling
  • Computational approaches to analysis of DNA microarray data.
    Methods Inf Med, Vol. 45 Suppl 1 (2006), pp. 91-103.
    by J Quackenbush
    posted to no-tag by alokm on 2006-11-30 15:45:15 as * along with 2 people maldi heliopais
  • Microarray data normalization and transformation.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 496-501.
    by J Quackenbush
    posted to microarray review by alokm on 2006-11-30 15:32:44 as * along with 6 people textoris chad_davis schuylrp heliopais frohike bertelsen
  • Inferring transcriptional modules from ChIP-chip, motif and microarray data.
    Genome Biol, Vol. 7, No. 5. (2006)
    by K Lemmens, T Dhollander, T De Bie, P Monsieurs, K Engelen, B Smets, J Winderickx, B De Moor, K Marchal
    posted to no-tag by alokm on 2006-11-27 21:37:35 as **** along with 2 people jfr kristallreiner
  • Integrated Assessment and Prediction of Transcription Factor Binding
    PLoS Computational Biology, Vol. preprint, No. 2006. (1 May 2006)
    by Andreas Beyer, Christopher Workman, Jens Hollunder, Dörte Radke, Ulrich Möller, Thomas Wilhelm, Trey G Ideker
    posted to no-tag by alokm on 2006-11-27 21:31:54 as **** along with 2 people brixtonmc ranb
  • Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks
    Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2523-2531.
    by Werhli, V Adriano, Grzegorczyk, Marco, Husmeier, Dirk
    posted to bayesian comparison ggm network by alokm on 2006-11-27 21:26:49 as ** along with 3 people czeller Borelli roys
  • Incorporating gene functions as priors in model-based clustering of microarray gene expression data
    Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 795-801.
    by Wei Pan
    posted to bayesian knowledge net prior by alokm on 2006-11-27 21:23:47 as ** along with 2 people akastrin dps
  • Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction.
    Proc Natl Acad Sci U S A, Vol. 101, No. 16. (April 2004), pp. 5934-5939.
    by Yeger E Lotem, S Sattath, N Kashtan, S Itzkovitz, R Milo, RY Pinter, U Alon, H Margalit
    posted to interaction network protein-protein bibtex-import by alokm on 2006-11-27 15:02:40 as ***
  • Revealing modular organization in the yeast transcriptional network
    Nature Genet, Vol. 31 (2002), pp. 370-377.
    by James Ihmels, Gilgi Friedlander, Sven Bergmann, Ofer Sarig, Yaniv Ziv, Naama Barkai
    posted to bibtex-import by alokm on 2006-11-27 15:02:40 as read
  • Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks
    Bioinformatics, Vol. 19, No. 17. (2003), pp. 2271-2282.
    by Dirk Husmeier
    posted to bibtex-import by alokm on 2006-11-27 15:02:40 as read
  • Using Bayesian networks to analyze expression data
    Journal of Computational Biology, Vol. 7, No. 3. (August 2000), pp. 601-620.
    by Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er
    posted to bibtex-import by alokm on 2006-11-27 15:02:40 as read
  • Kernel k-means: spectral clustering and normalized cuts
    (2004), pp. 551-556.
    by Inderjit S Dhillon, Yuqiang Guan, Brian Kulis
    posted to bibtex-import by alokm on 2006-11-27 15:02:40 as read
  • A tutorial on spectral clustering
    No. 149. (August 2006)
    by U von Luxburg
    posted to bibtex-import by alokm on 2006-11-27 15:02:40 as read
  • Kernel Methods for Pattern Analysis
    (June 2004)
    by John S Taylor, Nello Cristianini
    posted to bibtex-import by alokm on 2006-11-27 15:02:40 as read
  • Clustering Under Prior Knowledge with Application to Image Segmentation
    (2007)
    by Mario Figueiredo, Dong S Cheng, Vittorio Murino
    edited by B Scholkopf, JC Platt, T Hofmann
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Validation and functional annotation of expression-based clusters based on gene ontology
    BMC Bioinformatics, Vol. 7 (2006)
    by Ralf Steuer, Peter Humburg, Joachim Selbig
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Unsupervised and Semi-supervised Clustering:a Brief Survey
    (2005)
    by Nizar Grira, Michel Crucianu, Nozha Boujemaa
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Semi-Supervised Learning Literature Survey
    (2005)
    by Xiaojin Zhu
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Molecular biology for computer scientists
    (1993)
    by L Hunter
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Kernel Methods in Computational Biology
    (2004)
    edited by B Schã¶lkopf, K Tsuda, JP Vert
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Semi-supervised graph clustering: a kernel approach
    (2005), pp. 457-464.
    by Brian Kulis, Sugato Basu, Inderjit Dhillon, Raymond Mooney
    posted to spectral bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Nutritional Homeostasis in Batch and Steady-State Culture of Yeast
    Mol. Biol. Cell, Vol. 15, No. 9. (2004), pp. 4089-4104.
    by Alok J Saldanha, Matthew J Brauer, David Botstein
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Genomic expression programs in the response of yeast cells to environmental changes.
    Mol Biol Cell, Vol. 11, No. 12. (December 2000), pp. 4241-4257.
    by AP Gasch, PT Spellman, CM Kao, Carmel O Harel, MB Eisen, G Storz, D Botstein, PO Brown
    posted to bio high_throughput_dataset bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Integrative analysis of genome-wide experiments in the context of a large high-throughput data compendium
    Molecular Systems Biology, Vol. 1, No. 1. (March 2005)
    by Amos Tanay, Israel Steinfeld, Martin Kupiec, Ron Shamir
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Modeling and simulation of genetic regulatory systems: a literature review.
    J Comput Biol, Vol. 9, No. 1. (2002), pp. 67-103.
    by H de Jong
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Functional Discovery via a Compendium of Expression Profiles
    Cell, Vol. 102 (July 2000), pp. 109-126.
    by Timothy R Hughes, Matthew J Marton, Allan R Jones, Christopher J Roberts, Roland Stoughton, Christopher D Armour, Holly A Bennett, Ernest Coffey, Hongyue Dai, Yudong D He, Matthew J Kidd, Amy M King, Michael R Meyer, David Slade, Pek Y Lum, Sergey B Stepaniants, Daniel D Shoemaker, Daniel Gachotte, Kalpana Chakraburtty, Julian Simon, Martin Bard, Stephen H Friend
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • A statistical framework for genomic data fusion.
    Bioinformatics, Vol. 20, No. 16. (November 2004), pp. 2626-2635.
    by GR Lanckriet, T De Bie, N Cristianini, MI Jordan, WS Noble
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Kernel-based data fusion and its application to protein function prediction in yeast
    Proceedings of the Pacific Symposium on Biocomputing (January 2004), pp. 300-311.
    by GR Lanckriet, M Deng, N Cristianini, MI Jordan, WS Noble
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • An examination of procedures for determining the number of clusters in a data set
    Psychometrika (1985)
    by GW Milligan, MC Cooper
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • Comparing Partitions
    Journal of Classification (1985)
    by L Hubert, P Arabie
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • A systematic comparison and evaluation of biclustering methods for gene expression data
    Bioinformatics, Vol. 22, No. 9. (2006), pp. 1122-1129.
    by Amela Prelic, Stefan Bleuler, Philip Zimmermann, Anja Wille, Peter Buhlmann, Wilhelm Gruissem, Lars Hennig, Lothar Thiele, Eckart Zitzler
    posted to bibtex-import by alokm on 2006-11-27 15:02:39 as read
  • A module map showing conditional activity of expression modules in cancer.
    Nat Genet, Vol. 36, No. 10. (Oct 2004), pp. 1090-8.
    by Eran Segal, Nir Friedman, Daphne Koller, Aviv Regev
    posted to 15448693 analysis array databases expression family female gene genetic govt humans male multigene neoplasms non-phs non-us oligonucleotide oncogenes organ profiling research sequence specificity support us bibtex-import by alokm on 2006-11-27 15:02:37 as read
  • Computational discovery of gene modules and regulatory networks
    Nature Biotechnology, Vol. 21, No. 11. (2003), pp. 1337-1342.
    by Ziv B Joseph, Georg K Gerber, Tong I Lee, Nicola J Rinaldi, Jane Y Yoo, Franã§ois Robert, Benjamin D Gordon, Ernest Fraenkel, Tommi S Jaakkola, Richard A Young, David K Gifford
    posted to bibtex-import by alokm on 2006-11-27 15:02:37 as read
  • Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
    PNAS, Vol. 101, No. 9. (2004), pp. 2981-2986.
    by Amos Tanay, Roded Sharan, Martin Kupiec, Ron Shamir
    posted to bibtex-import by alokm on 2006-11-27 15:02:37 as read
  • From co-expression to co-regulation: how many microarray experiments do we need?
    Genome Biology, Vol. 5, No. 7. (2004)
    by Ka Yeung, Mario Medvedovic, Roger Bumgarner
    posted to bibtex-import by alokm on 2006-11-27 15:02:37 as read
  • A Unified Theory of Gene Expression
    Cell, Vol. 108, No. 4. (February 2002), pp. 439-451.
    by George Orphanides, Danny Reinberg
    posted to bibtex-import by alokm on 2006-11-27 15:02:37 as read
  • Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
    Nature Genetics, Vol. 34, No. 2. (2003), pp. 166-176.
    by Eran Segal, Michael Shapira, Aviv Regev, Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman
    posted to bibtex-import by alokm on 2006-11-27 15:02:37 as read
  • From signatures to models: understanding cancer using microarrays.
    Nat Genet, Vol. 37 Suppl (Jun 2005), pp. S38-45.
    by Eran Segal, Nir Friedman, Naftali Kaminski, Aviv Regev, Daphne Koller
    posted to 15920529 algorithms analysis animals array biological biology computational expression extramural gene genetic govt humans models neoplasms nih non-phs non-us oligonucleotide phs profiling regulation research sequence support transcription us bibtex-import by alokm on 2006-11-27 15:02:35 as read
  • Learning Module Networks
    Journal of Machine Learing Research, Vol. 6, No. Apr. (2005), pp. 557-588.
    by Eran Segal, Dana Pe'er, Aviv Regev, Daphne Koller, Nir Friedman
    posted to bibtex-import by alokm on 2006-11-27 15:02:35 as read
  • Inferring Cellular Networks Using Probabilistic Graphical Models
    Science, Vol. 303, No. 5659. (2004), pp. 799-805.
    by Nir Friedman
    posted to bibtex-import by alokm on 2006-11-27 15:02:35 as read
  • Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.
    Mol Biol Cell, Vol. 9, No. 12. (Dec 1998), pp. 3273-97.
    by PT Spellman, G Sherlock, MQ Zhang, VR Iyer, K Anders, MB Eisen, PO Brown, D Botstein, B Futcher
    posted to 9843569 acid b base binding cell cerevisiae cycle cyclin cyclins dna expression family fungal gene genes genetic govt hybridization messenger multigene non-phs non-us nucleic phs primers proteins regulation repair replication research rna saccharomyces sequence sites support transcription us bibtex-import by alokm on 2006-11-27 15:02:31 as read
  • Estimating genomic coexpression networks using first-order conditional independence.
    Genome Biol, Vol. 5, No. 12. (2004)
    by Paul M Magwene, Junhyong Kim
    posted to 15575966 bibtex-import by alokm on 2006-11-27 15:02:30 as read
  • An empirical Bayes approach to inferring large-scale gene association networks.
    Bioinformatics, Vol. 21, No. 6. (Mar 2005), pp. 754-64.
    by Juliane Schäfer, Korbinian Strimmer
    posted to bibtex-import by alokm on 2006-11-27 15:02:30 as read
  • Discovery of meaningful associations in genomic data using partial correlation coefficients
    Bioinformatics, Vol. 20, No. 18. (2004), pp. 3565-3574.
    by Alberto, Nan Bing, Ina Hoeschele, Pedro Mendes
    posted to bibtex-import by alokm on 2006-11-27 15:02:30 as read
  • A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and Implications for Functional Genomics
    Statistical Applications in Genetics and Molecular Biology, Vol. 4, No. 1. (2005)
    by Juliane Schäfer, Korbinian Strimmer
    posted to bibtex-import by alokm on 2006-11-27 15:02:30 as read
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