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di Cortel watchlist [36 articles]

Gli articoli piu' recenti che soddisfano i criteri di watchlist di di Cortel
  • A parallel graph decomposition algorithm for DNA sequencing with nanopores.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 889-896.
    by SH Bokhari, JR Sauer
    posted to algorithm nanopores sequencing by greg on 2005-03-25 08:49:51 as ** along with 1 group spliceml
  • RAP: a new computer program for de novo identification of repeated sequences in whole genomes.
    Bioinformatics, Vol. 21, No. 5. (1 March 2005), pp. 582-588.
    by D Campagna, C Romualdi, N Vitulo, M Del Favero, M Lexa, N Cannata, G Valle
    posted to algorithm eunice microsatellites repeats str tandem by greg on 2005-03-02 04:00:33 as ** along with 1 group spliceml
  • Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments.
    Trends Genet, Vol. 21, No. 2. (February 2005), pp. 93-102.
    by JM Johnson, S Edwards, D Shoemaker, EE Schadt
    posted to microarrays transcription by greg on 2005-02-15 15:40:57 as ** along with 7 people and 3 groups briann cassj eoghanharr imouthesmp xico adepace talponer spliceml EisenLab WetBiology
  • Network biology: understanding the cell's functional organization.
    Nat Rev Genet, Vol. 5, No. 2. (February 2004), pp. 101-113.
    by AL Barabási, ZN Oltvai
    posted to networks pathways tim by greg on 2005-01-31 09:16:37 as read along with 34 people and 11 groups camster snuppepuppan dbk jyuh LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele Evangelia heliopais shikin hryk streptomyces spliceml dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper GeneGo
  • Reconstructing pathways in large genetic networks from genetic perturbations.
    J Comput Biol, Vol. 11, No. 1. (2004), pp. 53-60.
    by A Wagner
    posted to algorithms graph pathway pathways by greg on 2005-01-14 12:58:36 as ** along with 2 people and 1 group cantupaz srp33 spliceml
  • Kademlia: A peer-to-peer information system based on the XOR metric
    (2002)
    by P Maymounkov, D Mazieres
    posted to p2p by greg on 2005-01-10 13:59:18 as ** along with 6 people and 3 groups jrw tautologico dpennaqueiroz aquaric dmeister gvdh spliceml P2P MuSAMA
  • Exploring the diversity of complex metabolic networks.
    Bioinformatics (4 January 2005)
    by Vassily Hatzimanikatis, Chunhui Li, Justin A A Ionita, Christopher S S Henry, Matthew D D Jankowski, Linda J J Broadbelt
    posted to metabolic pathways by greg on 2005-01-10 04:01:58 as *** along with 5 people and 1 group betainverse kuhn alexg jdiggans shung spliceml
  • Biological networks.
    Curr Opin Struct Biol, Vol. 13, No. 2. (April 2003), pp. 193-202.
    by E Alm, AP Arkin
    posted to pathways review by greg on 2005-01-10 02:55:24 as read along with 2 people and 1 group griota heliopais spliceml
  • Pathway databases.
    Ann N Y Acad Sci, Vol. 1020 (May 2004), pp. 77-91.
    by CF Schaefer
    posted to pathway_databases_review pathways by greg on 2005-01-10 02:54:46 as read along with 3 people and 1 group cantupaz AlexanderPico thomaskelder spliceml
  • TRbase: a database relating tandem repeats to disease genes for the human genome.
    Bioinformatics (12 October 2004)
    by T Boby, A-M M Patch, S J J Aves
    posted to databases repeats str by greg on 2005-01-06 06:51:39 along with 1 group spliceml
  • Tracking repeats using significance and transitivity.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by R Szklarczyk, J Heringa
    posted to identification repeats str by greg on 2005-01-06 06:34:21 along with 2 people and 1 group radek feenstra spliceml
  • Comparative genetics of functional trinucleotide tandem repeats in humans and apes.
    J Mol Evol, Vol. 59, No. 3. (September 2004), pp. 329-339.
    by AM Andrés, M Soldevila, O Lao, V Volpini, N Saitou, HT Jacobs, I Hayasaka, F Calafell, J Bertranpetit
    posted to apes human repeats str tandem trinucleotide by greg on 2005-01-06 06:33:30 along with 1 group spliceml
  • Dissecting the human spliceosome through bioinformatics and proteomics approaches.
    J Bioinform Comput Biol, Vol. 1, No. 4. (January 2004), pp. 743-750.
    by GM Peres Lopes, SJ de Souza
    posted to bioinformatics spliceosome by greg on 2005-01-06 06:11:48 along with 1 person and 1 group cassj spliceml
  • A graph based algorithm for generating EST consensus sequences.
    Bioinformatics (30 November 2004)
    by Ketil Malde, Eivind Coward, Inge Jonassen
    posted to algorithms consensus est graph by greg on 2005-01-06 06:10:28 along with 1 person and 1 group cantupaz spliceml
  • PIML: the Pathogen Information Markup Language.
    Bioinformatics, Vol. 21, No. 1. (1 January 2005), pp. 116-121.
    by Y He, RR Vines, AR Wattam, GV Abramochkin, AW Dickerman, JD Eckart, BW Sobral
    posted to markup pathogen xml by greg on 2005-01-06 05:07:11 along with 1 person and 3 groups A_Olympia spliceml Philosophy_of_Information Blog_and_Wiki_Research
  • Origins of introns based on the definition of exon modules and their conserved interfaces.
    Bioinformatics, Vol. 21, No. 1. (1 January 2005), pp. 2-9.
    by AD de Roos
    posted to alternative_splicing genome_evolution genome_structure by greg on 2005-01-05 04:25:54 along with 1 group spliceml
  • New strategy for the representation and the integration of biomolecular knowledge at a cellular scale.
    Nucleic Acids Res, Vol. 32, No. 12. (2004), pp. 3581-3589.
    by R Barriot, J Poix, A Groppi, A Barré, N Goffard, D Sherman, I Dutour, A de Daruvar
    posted to bioinformatics datamodels xml by greg on 2005-01-01 09:57:33 along with 1 group spliceml
  • notes A unified representation of multiprotein complex data for modeling interaction networks.
    Proteins, Vol. 57, No. 1. (1 October 2004), pp. 99-108.
    by C Ding, X He, RF Meraz, SR Holbrook
    posted to pathway_data_models pathways by greg on 2004-12-30 11:04:49 along with 1 group spliceml
  • An overview of data models for the analysis of biochemical pathways.
    Brief Bioinform, Vol. 4, No. 3. (September 2003), pp. 246-259.
    by Y Deville, D Gilbert, J van Helden, SJ Wodak
    posted to biological_data_models pathways by greg on 2004-12-30 03:04:57 along with 1 person and 2 groups alexr spliceml Autoregulation
  • Integrating biopathway databases for large-scale modeling and simulation
    (2004), pp. 43-52.
    by Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Satoru Miyano
    posted to pathway_visualization pathways tim by greg on 2004-12-29 06:07:30 along with 1 group spliceml
  • VitaPad: visualization tools for the analysis of pathway data.
    Bioinformatics (25 November 2004)
    by Matthew Holford, Naixin Li, Prakash Nadkarni, Hongyu Zhao
    posted to pathway_visualization pathways tim by greg on 2004-12-29 03:01:01 along with 1 group spliceml
  • Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing.
    BMC Genomics, Vol. 5, No. 1. (28 September 2004)
    by S Gupta, D Zink, B Korn, M Vingron, SA Haas
    posted to alternative_splicing ests by greg on 2004-12-27 06:55:21 along with 1 person and 1 group cassj spliceml
  • Genome wide identification and classification of alternative splicing based on EST data.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2579-2585.
    by S Gupta, D Zink, B Korn, M Vingron, SA Haas
    posted to alternative_splicing ests by greg on 2004-12-27 06:54:44 along with 2 people and 1 group cantupaz radek spliceml
  • SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 299-300.
    by A Krause, SA Haas, E Coward, M Vingron
    posted to alternative_splicing alternative_splicing_databases gloria spliceml by greg on 2004-12-27 06:52:07 along with 1 person and 1 group radek spliceml
  • Expressed sequence tags: clean before using. Correspondence re: Z. Wang et al., computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer. Cancer Res., 63: 655-657, 2003.
    Cancer Res, Vol. 63, No. 20. (15 October 2003)
    by R Sorek, O Basechess, HM Safer
    posted to alternative_splicing alternative_splicing_cancer cancer gloria by greg on 2004-12-23 06:59:57 along with 1 group spliceml
  • Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences.
    Nucleic Acids Res, Vol. 31, No. 19. (1 October 2003), pp. 5635-5643.
    by Q Xu, C Lee
    posted to alternative_splicing alternative_splicing_cancer cancer gloria by greg on 2004-12-23 06:59:54 along with 1 group spliceml
  • Computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer.
    Cancer Res, Vol. 63, No. 3. (1 February 2003), pp. 655-657.
    by Z Wang, HS Lo, H Yang, S Gere, Y Hu, KH Buetow, MP Lee
    posted to alternative_splicing alternative_splicing_cancer cancer gloria by greg on 2004-12-23 06:59:37 along with 1 group spliceml
  • Identification of alternatively spliced mRNA variants related to cancers by genome-wide ESTs alignment.
    Oncogene, Vol. 23, No. 17. (15 April 2004), pp. 3013-3023.
    by L Hui, X Zhang, X Wu, Z Lin, Q Wang, Y Li, G Hu
    posted to alternative_splicing alternative_splicing_cancer cancer gloria by greg on 2004-12-23 06:59:16 along with 1 person and 1 group eisei spliceml
  • Differential distribution of follistatin isoforms: application of a new FS315-specific immunoassay.
    J Clin Endocrinol Metab, Vol. 89, No. 10. (October 2004), pp. 5067-5075.
    by AL Schneyer, Q Wang, Y Sidis, PM Sluss
    posted to alternative_splicing cancer gloria by greg on 2004-12-22 02:06:38 along with 1 group spliceml
  • DEDB: a database of Drosophila melanogaster exons in splicing graph form.
    BMC Bioinformatics, Vol. 5, No. 1. (7 December 2004)
    by BT Lee, TW Tan, S Ranganathan
    posted to drosophila splicing by greg on 2004-12-21 06:46:36 along with 2 people and 1 group setar cajunsushi spliceml
  • notes Alternative splicing microarrays reveal functional expression of neuron-specific regulators in Hodgkin lymphoma cells.
    J Biol Chem (16 November 2004)
    by Angela Relogio, Claudia Ben-Dov, Michael Baum, Matteo Ruggiu, Christine Gemund, Vladimir Benes, Robert B B Darnell, Juan Valcarcel
    posted to alternative_splicing bioinformatics cancer splicing by greg on 2004-12-21 06:33:39 along with 1 group spliceml
  • Constructing ontology-driven protein family databases.
    Bioinformatics (25 November 2004)
    by K Wolstencroft, R McEntire, R Stevens, L Tabernero, A Brass
    posted to databases ontology by greg on 2004-12-09 10:16:45 along with 1 group spliceml
  • Frequency and coverage of trinucleotide repeats in eukaryotes.
    Gene, Vol. 317, No. 1-2. (23 October 2003), pp. 117-125.
    by P Astolfi, D Bellizzi, V Sgaramella
    posted to eunice sequence_repeats str by greg on 2004-12-09 05:14:53 along with 1 group spliceml
  • Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions.
    Genome Biol, Vol. 4, No. 2. (2003)
    by S Subramanian, RK Mishra, L Singh
    posted to eunice microsatellites sequence_repeats str by greg on 2004-12-09 05:14:01 along with 1 group spliceml
  • Differential distribution of simple sequence repeats in eukaryotic genome sequences.
    Mol Biol Evol, Vol. 18, No. 7. (July 2001), pp. 1161-1167.
    by MV Katti, PK Ranjekar, VS Gupta
    posted to eunice sequence_repeats str by greg on 2004-12-09 05:12:00 along with 1 group spliceml
  • A non-EST-based method for exon-skipping prediction.
    Genome Res, Vol. 14, No. 8. (August 2004), pp. 1617-1623.
    by R Sorek, R Shemesh, Y Cohen, O Basechess, G Ast, R Shamir
    posted to bioinformatics est genomics splicing by greg on 2004-11-14 14:44:10 along with 1 person and 2 groups kaspermunch spliceml Bioinformatics
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