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di Ayest watchlist [80 articles]

Gli articoli piu' recenti che soddisfano i criteri di watchlist di di Ayest
  • A Hidden Markov Model approach to variation among sites in rate of evolution.
    Mol Biol Evol, Vol. 13, No. 1. (January 1996), pp. 93-104.
  • Online Learning in Discrete Hidden Markov Models
    AIP Conference Proceedings, Vol. 872, No. 1. (2006), pp. 187-194.
    by Roberto Alamino, Nestor Caticha
    edited by Ali M Djafari
  • Adjusted Viterbi training for hidden Markov models
    (14 Sep 2007)
    posted to hidden-markov-models unsupervised-learning by whym on 2007-12-07 12:21:34 as **
  • NovoHMM: A Hidden Markov Model for de Novo Peptide Sequencing
    Anal. Chem., Vol. 77, No. 22. (15 November 2005), pp. 7265-7273.
  • PepHMM: A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search
    Anal. Chem., Vol. 78, No. 2. (15 January 2006), pp. 432-437.
    by Y Wan, A Yang, T Chen
  • Discriminative training methods for hidden Markov models: theory and experiments with perceptron algorithms
    (2002), pp. 1-8.
    by Michael Collins
    posted to hidden-markov-models machine-learning perceptron by whym on 2007-07-16 17:32:03 as ***
  • Hidden Markov Models : Estimation and Control (Stochastic Modelling and Applied Probability)
    (09 January 1997)
    by Robert J Elliott, Lakhdar Aggoun, John B Moore
    posted to hidden-markov-models by joeionnojitsu on 2006-04-03 01:02:34 as read
  • Analysis of gene expression in pathophysiological states: Balancing false discovery and false negative rates
    PNAS (9 January 2006), 0510115103.
    by Andrew W Norris, Ronald C Kahn
    posted to analyse pathway puces_adn by textoris on 2006-01-25 13:21:07 as read along with 2 people jfr tabu
  • Systems Analyses Reveal Two Chaperone Networks with Distinct Functions in Eukaryotic Cells
    Cell, Vol. 124, No. 1. (13 January 2006), pp. 75-88.
    by Veronique Albanese, Alice Y Yam, Joshua Baughman, Charles Parnot, Judith Frydman
  • Mapping long-range chromatin organization within the chicken alpha-globin gene domain using oligonucleotide DNA arrays.
    Genomics, Vol. 85, No. 1. (January 2005), pp. 143-151.
    posted to alpha_globin chromatin dea organization puces_adn by textoris on 2005-09-20 08:54:10 as read
  • Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.
    Nucleic Acids Res, Vol. 30, No. 4. (15 February 2002)
    by YH Yang, S Dudoit, P Luu, DM Lin, V Peng, J Ngai, TP Speed
    posted to puces_adn stat by textoris on 2005-09-18 07:20:57 as read along with 3 people gupton debasis talponer
  • Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments.
    Proc Natl Acad Sci U S A, Vol. 98, No. 16. (31 July 2001), pp. 8961-8965.
    by MK Kerr, GA Churchill
    posted to cluster puces_adn stat by textoris on 2005-09-18 07:18:59 as read along with 4 people ghattem pbellec briordan klo
  • Fundamentals of cDNA microarray data analysis.
    Trends Genet, Vol. 19, No. 11. (November 2003), pp. 649-659.
    by YF Leung, D Cavalieri
    posted to puces_adn stat by textoris on 2005-09-18 07:15:33 as read along with 2 people heliopais tvdbulck
  • Statistical implications of pooling RNA samples for microarray experiments.
    BMC Bioinformatics, Vol. 4 (24 June 2003)
    by X Peng, CL Wood, EM Blalock, KC Chen, PW Landfield, AJ Stromberg
    posted to analyse bioinfo puces_adn stat by textoris on 2005-09-17 15:58:10 as **
  • Sensitivity issues in DNA array-based expression measurements and performance of nylon microarrays for small samples.
    Hum Mol Genet, Vol. 8, No. 9. (September 1999), pp. 1715-1722.
    posted to genomique puces_adn transcriptome by textoris on 2005-06-30 18:54:30 as read
  • Normalization strategies for cDNA microarrays.
    Nucleic Acids Res, Vol. 28, No. 10. (15 May 2000)
  • Cluster analysis and display of genome-wide expression patterns.
    Proc Natl Acad Sci U S A, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868.
    by MB Eisen, PT Spellman, PO Brown, D Botstein
  • Statistical significance for hierarchical clustering in genetic association and microarray expression studies.
    BMC Bioinformatics, Vol. 4, No. 1. (11 December 2003)
    by MA Levenstien, Y Yang, J Ott
    posted to cluster puces_adn stat transcriptome by textoris on 2005-06-30 18:19:39 as read along with 1 person jfr
  • Comparisons and validation of statistical clustering techniques for microarray gene expression data.
    Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 459-466.
    by S Datta, S Datta
  • A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes.
    Bioinformatics, Vol. 17, No. 6. (June 2001), pp. 509-519.
    by P Baldi, AD Long
  • A simple method for statistical analysis of intensity differences in microarray-derived gene expression data.
    BMC Biotechnol, Vol. 1, No. 1. (2001)
    by A Kamb, M Ramaswami
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 18:32:58 as **
  • Statistical modeling of large microarray data sets to identify stimulus-response profiles.
    Proc Natl Acad Sci U S A, Vol. 98, No. 10. (8 May 2001), pp. 5631-5636.
    by LP Zhao, R Prentice, L Breeden
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 18:31:52 as **
  • Ratio statistics of gene expression levels and applications to microarray data analysis.
    Bioinformatics, Vol. 18, No. 9. (September 2002), pp. 1207-1215.
    by Y Chen, V Kamat, ER Dougherty, ML Bittner, PS Meltzer, JM Trent
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 18:30:14 as **
  • Improving the statistical detection of regulated genes from microarray data using intensity-based variance estimation.
    BMC Genomics, Vol. 5, No. 1. (27 February 2004)
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 18:28:53 as **
  • Rank Difference Analysis of Microarrays (RDAM), a novel approach to statistical analysis of microarray expression profiling data.
    BMC Bioinformatics, Vol. 5, No. 1. (11 October 2004)
    by DE Martin, P Demougin, MN Hall, M Bellis
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 18:26:30 as ** along with 1 person RMGraze
  • Arabidopsis gene expression changes during cyst nematode parasitism revealed by statistical analyses of microarray expression profiles.
    Plant J, Vol. 33, No. 5. (March 2003), pp. 911-921.
    by DP Puthoff, D Nettleton, SR Rodermel, TJ Baum
    posted to genomique puces_adn transcriptome by textoris on 2005-06-28 18:25:36 as **
  • On the utility of pooling biological samples in microarray experiments.
    Proc Natl Acad Sci U S A (8 March 2005)
    by C Kendziorski, R A A Irizarry, K-S S Chen, J D D Haag, M N N Gould
  • Individuality and variation in gene expression patterns in human blood.
    Proc Natl Acad Sci U S A, Vol. 100, No. 4. (18 February 2003), pp. 1896-1901.
    by AR Whitney, M Diehn, SJ Popper, AA Alizadeh, JC Boldrick, DA Relman, PO Brown
  • Sample size for detecting differentially expressed genes in microarray experiments.
    BMC Genomics, Vol. 5, No. 1. (8 November 2004)
    by C Wei, J Li, RE Bumgarner
  • Gene expression profile of murine long-term reconstituting vs. short-term reconstituting hematopoietic stem cells.
    Proc Natl Acad Sci U S A, Vol. 102, No. 7. (15 February 2005), pp. 2448-2453.
    by JF Zhong, Y Zhao, S Sutton, A Su, Y Zhan, L Zhu, C Yan, T Gallaher, PB Johnston, WF Anderson, MP Cooke
    posted to genomique puces_adn transcriptome by textoris on 2005-06-28 17:24:05 as **
  • Expression scanning of an array of growth control genes in human tumor cell lines.
    Oncogene, Vol. 18, No. 26. (1 July 1999), pp. 3905-3912.
    posted to cancer genomique puces_adn transcriptome by textoris on 2005-06-28 17:23:02 as **
  • Gene expression profiles of poor-prognosis primary breast cancer correlate with survival.
    Hum Mol Genet, Vol. 11, No. 8. (15 April 2002), pp. 863-872.
    posted to cancer genomique puces_adn transcriptome by textoris on 2005-06-28 17:18:41 as **
  • Biomedical discovery with DNA arrays.
    Cell, Vol. 102, No. 1. (7 July 2000), pp. 9-15.
    by RA Young
    posted to genomique puces_adn by textoris on 2005-06-28 17:17:43 as ** along with 1 person ccr
  • Expression profiling using cDNA microarrays.
    Methods Mol Biol, Vol. 236 (2003), pp. 365-380.
    by S Zhao, WB Bruce
    posted to genomique puces_adn transcriptome by textoris on 2005-06-28 17:16:12 as **
  • Use of transcriptome data to unravel the fine structure of genes involved in sepsis.
    J Infect Dis, Vol. 187 Suppl 2 (15 June 2003)
    posted to genetique genomique puces_adn sepsis transcriptome by textoris on 2005-06-28 17:11:39 as **
  • Prediction of cancer outcome with microarrays: a multiple random validation strategy.
    Lancet, Vol. 365, No. 9458. (5 February 2005), pp. 488-492.
  • Microarrays and molecular research: noise discovery?
    Lancet, Vol. 365, No. 9458. (5 February 2005), pp. 454-455.
    by JP Ioannidis
    posted to genomique puces_adn transcriptome by textoris on 2005-06-28 17:05:46 as ** along with 1 person jfr
  • Exploration, normalization, and summaries of high density oligonucleotide array probe level data.
    Biostatistics, Vol. 4, No. 2. (April 2003), pp. 249-264.
  • Statistical methods for microarray assays.
    J Appl Genet, Vol. 43, No. 3. (2002), pp. 269-278.
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 16:54:20 as **
  • Statistical intelligence: effective analysis of high-density microarray data.
    Drug Discov Today, Vol. 7, No. 11 Suppl. (1 June 2002)
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 16:50:07 as ** along with 1 person miguel
  • Processing and quality control of DNA array hybridization data.
    Bioinformatics, Vol. 16, No. 11. (November 2000), pp. 1014-1022.
    posted to genomique puces_adn stat transcriptome by textoris on 2005-06-28 16:48:17 as **
  • A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments.
    Bioinformatics, Vol. 18, No. 4. (April 2002), pp. 546-554.
    by W Pan
  • Evaluating test statistics to select interesting genes in microarray experiments.
    Hum Mol Genet, Vol. 11, No. 19. (15 September 2002), pp. 2223-2232.
  • Microarray data normalization and transformation.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 496-501.
  • Molecular signatures of sepsis: multiorgan gene expression profiles of systemic inflammation.
    Am J Pathol, Vol. 159, No. 4. (October 2001), pp. 1199-1209.
    posted to genomique puces_adn sepsis transcriptome by textoris on 2005-06-28 05:27:58 as read
  • Sepsis gene expression profiling: murine splenic compared with hepatic responses determined by using complementary DNA microarrays.
    Crit Care Med, Vol. 30, No. 12. (December 2002), pp. 2711-2721.
    by JP Cobb, JM Laramie, GD Stormo, JJ Morrissey, WD Shannon, Y Qiu, IE Karl, TG Buchman, RS Hotchkiss
    posted to genomique puces_adn sepsis transcriptome by textoris on 2005-06-28 05:26:18 as **
  • Expression profiling: toward an application in sepsis diagnostics.
    Shock, Vol. 22, No. 1. (July 2004), pp. 29-33.
    by M Prucha, A Ruryk, H Boriss, E Möller, R Zazula, I Herold, RA Claus, KA Reinhart, P Deigner, S Russwurm
    posted to genomique puces_adn sepsis transcriptome by textoris on 2005-06-28 05:24:52 as **
  • Application of genome-wide expression analysis to human health and disease.
    Proc Natl Acad Sci U S A (21 March 2005)
    by J Perren P Cobb, Michael N N Mindrinos, Carol Miller-Graziano, Steve E E Calvano, Henry V V Baker, Wenzhong Xiao, Krzysztof Laudanski, Bernard H H Brownstein, Constance M M Elson, Douglas L L Hayden, David N N Herndon, Stephen F F Lowry, Ronald V V Maier, David A A Schoenfeld, Lyle L L Moldawer, Ronald W W Davis, Ronald G G Tompkins, Henry V V Baker, Paul Bankey, Timothy Billiar, Bernard H H Brownstein, Steve E E Calvano, David Camp, Irshad Chaudry, J Perren P Cobb, Ronald W W Davis, Constance M M Elson, Bradley Freeman, Richard Gamelli, Nicole Gibran, Brian Harbrecht, Douglas L L Hayden, Wyrta Heagy, David Heimbach, David N N Herndon, Jureta Horton, John Hunt, Krzysztof Laudanski, James Lederer, Stephen F F Lowry, Ronald V V Maier, John Mannick, Bruce McKinley, Carol Miller-Graziano, Michael N N Mindrinos, Joseph Minei, Lyle L L Moldawer, Ernest Moore, Frederick Moore, Robert Munford, Avery Nathens, Grant O'keefe, Gary Purdue, Laurence Rahme, Daniel Remick, Matthew Sailors, David A A Schoenfeld, Michael Shapiro, Geoffrey Silver, Richard Smith, Gregory Stephanopoulos, Gary Stormo, Ronald G G Tompkins, Mehmet Toner, Shaw Warren, Michael West, Steven Wolfe, Wenzhong Xiao, Vernon Young
  • Independence and reproducibility across microarray platforms
    Nature Methods, Vol. 2, No. 5. (21 April 2005), pp. 337-344.
    by Jennie E Larkin, Bryan C Frank, Haralambos Gavras, Razvan Sultana, John Quackenbush
  • Standardizing global gene expression analysis between laboratories and across platforms.
    Nat Methods, Vol. 2, No. 5. (May 2005), pp. 351-356.
    by T Bammler, RP Beyer, S Bhattacharya, GA Boorman, A Boyles, BU Bradford, RE Bumgarner, PR Bushel, K Chaturvedi, D Choi, ML Cunningham, S Deng, HK Dressman, RD Fannin, FM Farin, JH Freedman, RC Fry, A Harper, MC Humble, P Hurban, TJ Kavanagh, WK Kaufmann, KF Kerr, L Jing, JA Lapidus, MR Lasarev, J Li, YJ Li, EK Lobenhofer, X Lu, RL Malek, S Milton, SR Nagalla, JP O'malley, VS Palmer, P Pattee, RS Paules, CM Perou, K Phillips, LX Qin, Y Qiu, SD Quigley, M Rodland, I Rusyn, LD Samson, DA Schwartz, Y Shi, JL Shin, SO Sieber, S Slifer, MC Speer, PS Spencer, DI Sproles, JA Swenberg, WA Suk, RC Sullivan, R Tian, RW Tennant, SA Todd, CJ Tucker, B Van Houten, BK Weis, S Xuan, H Zarbl,
    posted to analyse genomique puces_adn stat transcriptome by textoris on 2005-06-27 19:57:35 as **
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