Tag whole_genome [40 articles]

Genome Biology, Vol. 8 (26 June 2007), R124.

by Amol Prakash, Martin Tompa

posted to alignment statistics whole_genome by stajich on 2008-02-03 23:06:15 as along with 3 people and 2 groups dpollard AaronDarling lilou EisenLab Berkeley Mycology

PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e13.

by Guo-Cheng Yuan, Jun S Liu

posted to computational_biology nucleosome prediction whole_genome by stajich on 2008-04-20 02:12:19 as along with 1 person and 1 group aalibes Berkeley Mycology

Genome Res, Vol. 18, No. 1. (January 2008), pp. 137-147.

by DR Scannell, KH Wolfe

posted to duplication genome_evolution protein_evolution saccharomyces whole_genome yeast by stajich on 2008-03-10 17:52:44 as along with 3 people and 1 group djkt dandaman gjuggler Berkeley Mycology

Proc. Natl. Acad. Sci. U. S. A., Vol. 100, No. 16. (2003), pp. 9440-9445.

by JD Storey, R Tibshirani

posted to genomics statistical_significance whole_genome by pradiptaray on 2008-07-01 02:14:36 as along with 1 person bpb

PLoS Biology, Vol. 5, No. 11. (1 November 2007), e310.

by David J Begun, Alisha K Holloway, Kristian Stevens, Ladeana W Hillier, Yu-Ping Poh, Matthew W Hahn, Phillip M Nista, Corbin D Jones, Andrew D Kern, Colin N Dewey, Lior Pachter, Eugene Myers, Charles H Langley

posted to drosophila genomics snp whole_genome by pradiptaray on 2008-07-01 02:03:21 as along with 3 people bpb emptyhb dmc

Mol Biol Evol (14 December 2006)

by Amelie Veron, Kerstin Kaufmann, Erich Bornberg-Bauer

posted to whole_genome paralog network duplication by dpollard to the group EisenLab on 2007-01-19 17:02:46 as along with 2 people and 2 groups dchughes TaqSys G4ID Genetics-of-Gambling

PLoS Biology, Vol. 5, No. 11. (1 November 2007), e310.

by David J Begun, Alisha K Holloway, Kristian Stevens, Ladeana W Hillier, Yu-Ping Poh, Matthew W Hahn, Phillip M Nista, Corbin D Jones, Andrew D Kern, Colin N Dewey, Lior Pachter, Eugene Myers, Charles H Langley

posted to population_genetics whole_genome by cwbrown to the group EisenLab on 2007-11-07 00:29:37 as along with 4 people and 2 groups xingxu caseybrown Neeperando druvus Computational-Genomics Notre Dame Bioinformatics

PLoS Comput Biol, Vol. 3, No. 1. (5 January 2007)

by Gina Cannarozzi, Adrian Schneider, Gaston Gonnet

posted to whole_genome phylogeny mammal by dpollard to the group EisenLab on 2007-01-27 21:59:31 as along with 2 people aprasad Garamonfok

Proceedings of the National Academy of Sciences (26 November 2007), 0709013104.

by Michele Clamp, Ben Fry, Mike Kamal, Xiaohui Xie, James Cuff, Michael F Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S Lander

posted to whole_genome by giovanni on 2007-11-26 23:08:05 as along with 15 people and 3 groups tmmurali rvosa balicea sebastien_vigneau neils stajich cjeans cabbagezs maximilianh oelemento gjuggler slroberd renatomilani gracio Ema EisenLab FAB-lab Berkeley Mycology

Brief Funct Genomic Proteomic (29 October 2007), elm025.

by Giulietta Spudich, Xose M Fernandez-Suarez, Ewan Birney

posted to bioinformatic whole_genome by Ayest on 2007-12-03 10:04:02 as along with 1 person jyuh

Oncogene, Vol. aop, No. current.

by Abdel Aouacheria, Vincent Navratil, Wenyu Wen, Ming Jiang, Dominique Mouchiroud, Christian Gautier, Manolo Gouy, Mingjie Zhang, Mingjie Zhang

posted to cancer snp whole_genome by Ayest on 2006-02-18 17:17:55 as along with 1 person ramensky

Genome Res., Vol. 13, No. 1. (1 January 2003), pp. 73-80.

by Olivier Couronne, Alexander Poliakov, Nicolas Bray, Tigran Ishkhanov, Dmitriy Ryaboy, Edward Rubin, Lior Pachter, Inna Dubchak

posted to alignment evolution whole_genome by Ayest on 2006-02-28 09:24:59 as along with 2 people operon olivierkuro

Hum Mol Genet, Vol. 15 Suppl 1 (15 April 2006)

by CN Dewey, L Pachter

posted to alignment whole_genome by Ayest on 2006-09-21 09:28:26 as along with 6 people and 2 groups operon tny dchughes AaronDarling echinotrix Neeperando G4ID Genetics-of-Gambling

Protist, Vol. 156, No. 4. (13 December 2005), pp. 377-392.

by Michael L Ginger

posted to evolution whole_genome by Ayest on 2006-03-15 16:53:55 as

Genome Res, Vol. 12, No. 4. (April 2002), pp. 656-664.

by WJ Kent

posted to alignment whole_genome by Ayest on 2006-02-28 09:29:15 as along with 18 people and 1 group operon miguel pcahan1 indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin talponer bozdagd gpappas EisenLab

BMC Genetics, Vol. 9 (05 February 2008), 14.

by Adam B Olshen, Bert Gold, Kirk E Lohmueller, Jeffrey P Struewing, Jaya Satagopan, Stefan A Stefanov, Eleazar Eskin, Tomas Kirchhoff, James A Lautenberger, Robert J Klein, Eitan Friedman, Larry Norton, Nathan A Ellis, Agnes Viale, Catherine S Lee, Patrick I Borgen, Andrew G Clark, Kenneth Offit, Jeff Boyd

posted to ashkenazi autosomal ceph ceu jews ld wga whole_genome by Archaeogenetics on 2008-02-21 04:19:22 as along with 1 person xingxu

Nature Genetics, Vol. 38, No. 2. (25 December 2005), pp. 223-227.

by Jared A Drake, Christine Bird, James Nemesh, Daryl J Thomas, Christopher Newton-Cheh, Alexandre Reymond, Laurent Excoffier, Homa Attar, Stylianos E Antonarakis, Emmanouil T Dermitzakis, Joel N Hirschhorn

posted to cns genome_evolution human_genome jc whole_genome by aprasad on 2006-02-25 21:39:22 as along with 5 people and 2 groups ccots ashandanj Stew cisevol bpcusack EisenLab cis-regulatory-evolution

Mol Biol Evol (6 March 2006)

by Ben-Yang Y Liao, Jianzhi Zhang

posted to evolution genome_evolution human_genome jc selection whole_genome by aprasad on 2006-03-31 00:39:36 as along with 5 people and 1 group dragonrez dpollard djkt cjeans emarker EisenLab

BMC Evolutionary Biology, Vol. 7 (29 August 2007), 152.

by Andrea Zuccolo, Aswathy Sebastian, Jayson Talag, Yeisoo Yu, Hyeran Kim, Kristi Collura, Dave Kudrna, Rod A Wing

posted to genome_size plants repeats whole_genome by aprasad on 2007-09-05 15:10:57 as

Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 347-354.

by Alexander E Vinogradov

posted to cns genome_evolution genome_size jc selection whole_genome by aprasad on 2006-03-31 00:43:33 as along with 5 people and 2 groups tuck indigoviolet penka miniprep lilou EisenLab Nie

Proc Biol Sci (6 September 2006)

by Frederic Veyrunes, Gauthier Dobigny, Fengtang Yang, Patricia C M C O'brien, Josette Catalan, Terence J J Robinson, Janice Britton-Davidian

posted to mouse phylogenetics tree whole_genome by aprasad on 2006-10-10 12:54:24 as

Bioinformatics (19 January 2007)

by B E E Dutilh, V van Noort, R T J M T van der Heijden, T Boekhout, B Snel, M A A Huynen

posted to whole_genome phylogenomics phylogenetics ortholog alignment by aprasad on 2007-01-29 14:41:46 as

J Hered, Vol. 96, No. 5. (t 2005), pp. 485-493.

by CA Redi, H Zacharias, S Merani, M Oliveira-Miranda, M Aguilera, M Zuccotti, S Garagna, E Capanna

posted to bat genome_size whole_genome by aprasad on 2006-03-28 16:45:05 as

Proc Natl Acad Sci U S A, Vol. 104, No. 6. (6 February 2007), pp. 1895-1900.

by EJ Pritham, C Feschotte

posted to bat genome_size repeats transposon whole_genome by aprasad on 2007-08-04 16:19:20 as along with 1 person nirwin

Mol Biol Evol, Vol. 24, No. 7. (1 July 2007), pp. 1443-1446.

by Feng-Chi Chen, Shu-Miaw Chaw, Yun-Huei Tzeng, Sheng-Shun Wang, Trees-Juen Chuang

posted to coding evolution genome_evolution splicing whole_genome by aprasad on 2007-07-24 17:22:39 as

Nature, Vol. 409, No. 6822. (15 February 2001), pp. 860-921.

by Michael J Morgan

posted to genome human_genome sequence whole_genome by aprasad on 2005-08-08 22:15:15 as along with 18 people and 3 groups Cortel dragonrez jnemecek gg bicko Dax42 yas balajis xdeupi dullhunk dgront djkt timflutre olympos nagendraproj incovoma yoanjacquemin brant Proteinkinases T_lab LabCompMed

Nucleic Acids Res (12 August 2006)

by Nihar Sheth, Xavier Roca, Michelle L L Hastings, Ted Roeder, Adrian R R Krainer, Ravi Sachidanandam

posted to comparative_genomics genomics splicing whole_genome by aprasad on 2006-10-20 14:45:24 as along with 3 people and 2 groups indigoviolet penka ankur_iitg EisenLab Nie

PNAS, Vol. 103, No. 8. (21 February 2006), pp. 2740-2745.

by Michael Kamal, Xiaohui Xie, Eric S Lander

posted to cns mammal repeat selection whole_genome by aprasad on 2006-06-26 20:49:09 as along with 4 people and 2 groups balicea cmm cisevol gjuggler FAB-lab cis-regulatory-evolution

Nature, Vol. 432, No. 7018. (9 December 2004), pp. 695-716.

by LW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, P Bork, DW Burt, MA Groenen, ME Delany, JB Dodgson, AT Chinwalla, PF Cliften, SW Clifton, KD Delehaunty, C Fronick, RS Fulton, TA Graves, C Kremitzki, D Layman, V Magrini, JD McPherson, TL Miner, P Minx, WE Nash, MN Nhan, JO Nelson, LG Oddy, CS Pohl, J Randall-Maher, SM Smith, JW Wallis, SP Yang, MN Romanov, CM Rondelli, B Paton, J Smith, D Morrice, L Daniels, HG Tempest, L Robertson, JS Masabanda, DK Griffin, A Vignal, V Fillon, L Jacobbson, S Kerje, L Andersson, RP Crooijmans, J Aerts, JJ van der Poel, H Ellegren, RB Caldwell, SJ Hubbard, DV Grafham, AM Kierzek, SR McLaren, IM Overton, H Arakawa, KJ Beattie, Y Bezzubov, PE Boardman, JK Bonfield, MD Croning, RM Davies, MD Francis, SJ Humphray, CE Scott, RG Taylor, C Tickle, WR Brown, J Rogers, JM Buerstedde, SA Wilson, L Stubbs, I Ovcharenko, L Gordon, S Lucas, MM Miller, H Inoko, T Shiina, J Kaufman, J Salomonsen, K Skjoedt, GK Wong, J Wang, B Liu, J Wang, J Yu, H Yang, M Nefedov, M Koriabine, PJ Dejong, L Goodstadt, C Webber, NJ Dickens, I Letunic, M Suyama, D Torrents, C von Mering, EM Zdobnov, K Makova, A Nekrutenko, L Elnitski, P Eswara, DC King, S Yang, S Tyekucheva, A Radakrishnan, RS Harris, F Chiaromonte, J Taylor, J He, M Rijnkels, S Griffiths-Jones, A Ureta-Vidal, MM Hoffman, J Severin, SM Searle, AS Law, D Speed, D Waddington, Z Cheng, E Tuzun, E Eichler, Z Bao, P Flicek, DD Shteynberg, MR Brent, JM Bye, EJ Huckle, S Chatterji, C Dewey, L Pachter, A Kouranov, Z Mourelatos, AG Hatzigeorgiou, AH Paterson, R Ivarie, M Brandstrom, E Axelsson, N Backstrom, S Berlin, MT Webster, O Pourquie, A Reymond, C Ucla, SE Antonarakis, M Long, JJ Emerson, E Betrán, I Dupanloup, H Kaessmann, AS Hinrichs, G Bejerano, TS Furey, RA Harte, B Raney, A Siepel, WJ Kent, D Haussler, E Eyras, R Castelo, JF Abril, S Castellano, F Camara, G Parra, R Guigo, G Bourque, G Tesler, PA Pevzner, A Smit, LA Fulton, ER Mardis, RK Wilson,

posted to bird chicken comparative_genomics genome sequence whole_genome by aprasad on 2005-12-19 22:25:32 as along with 5 people and 4 groups dchughes dullhunk harikrishna djkt jandot hst-bmi Bioinformatics G4ID Genetics-of-Gambling

Bioinformatics, Vol. 23, No. 13. (1 July 2007)

by G Lunter

posted to evolution human indel mouse mutation_rate whole_genome by aprasad on 2007-08-07 22:22:46 as along with 3 people and 1 group AaronDarling mailund elfar Bioinformatics

Nature, Vol. 431, No. 7011. (21 October 2004), pp. 931-945.

by

posted to genome human_genome sequence whole_genome by aprasad on 2005-10-26 23:34:37 as along with 11 people and 2 groups setar Cortel dullhunk hdopazo caporaso nickluscombe joshuashen tvdbulck antonkratz shikin blackm0k biomedical-nlp EBI-regulation

Proc Natl Acad Sci U S A, Vol. 104, No. 22. (29 May 2007), pp. 9451-9456.

by MM Mwangi, SW Wu, Y Zhou, K Sieradzki, H de Lencastre, P Richardson, D Bruce, E Rubin, E Myers, ED Siggia, A Tomasz

posted to bacteria drug_resistance evolution sequencing whole_genome by aprasad on 2007-07-03 12:47:00 as along with 1 person Xavier

Science, Vol. 301, No. 5641. (26 September 2003), pp. 1898-1903.

by EF Kirkness, V Bafna, AL Halpern, S Levy, K Remington, DB Rusch, AL Delcher, M Pop, W Wang, CM Fraser, JC Venter

posted to dog genome sequence whole_genome by aprasad on 2005-12-19 23:13:10 as along with 1 person GustavoLacerda

Nature, Vol. 437, No. 7055., pp. 69-87.

by The

posted to chimp comparative_genomics genome sequence whole_genome by aprasad on 2005-12-19 22:41:09 as along with 10 people and 3 groups cannin chrn great_apes indigoviolet dullhunk djkt JeffR100 Garamonfok iris42 rvosa biodiversity_conservation EisenLab FAB-lab

Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562.

by RH Waterston, K Lindblad-Toh, E Birney, J Rogers, JF Abril, P Agarwal, R Agarwala, R Ainscough, M Alexandersson, P An, SE Antonarakis, J Attwood, R Baertsch, J Bailey, K Barlow, S Beck, E Berry, B Birren, T Bloom, P Bork, M Botcherby, N Bray, MR Brent, DG Brown, SD Brown, C Bult, J Burton, J Butler, RD Campbell, P Carninci, S Cawley, F Chiaromonte, AT Chinwalla, DM Church, M Clamp, C Clee, FS Collins, LL Cook, RR Copley, A Coulson, O Couronne, J Cuff, V Curwen, T Cutts, M Daly, R David, J Davies, KD Delehaunty, J Deri, ET Dermitzakis, C Dewey, NJ Dickens, M Diekhans, S Dodge, I Dubchak, DM Dunn, SR Eddy, L Elnitski, RD Emes, P Eswara, E Eyras, A Felsenfeld, GA Fewell, P Flicek, K Foley, WN Frankel, LA Fulton, RS Fulton, TS Furey, D Gage, RA Gibbs, G Glusman, S Gnerre, N Goldman, L Goodstadt, D Grafham, TA Graves, ED Green, S Gregory, R Guigó, M Guyer, RC Hardison, D Haussler, Y Hayashizaki, LW Hillier, A Hinrichs, W Hlavina, T Holzer, F Hsu, A Hua, T Hubbard, A Hunt, I Jackson, DB Jaffe, LS Johnson, M Jones, TA Jones, A Joy, M Kamal, EK Karlsson, D Karolchik, A Kasprzyk, J Kawai, E Keibler, C Kells, WJ Kent, A Kirby, DL Kolbe, I Korf, RS Kucherlapati, EJ Kulbokas, D Kulp, T Landers, JP Leger, S Leonard, I Letunic, R Levine, J Li, M Li, C Lloyd, S Lucas, B Ma, DR Maglott, ER Mardis, L Matthews, E Mauceli, JH Mayer, M McCarthy, WR McCombie, S McLaren, K McLay, JD McPherson, J Meldrim, B Meredith, JP Mesirov, W Miller, TL Miner, E Mongin, KT Montgomery, M Morgan, R Mott, JC Mullikin, DM Muzny, WE Nash, JO Nelson, MN Nhan, R Nicol, Z Ning, C Nusbaum, MJ O'Connor, Y Okazaki, K Oliver, E Overton-Larty, L Pachter, G Parra, KH Pepin, J Peterson, P Pevzner, R Plumb, CS Pohl, A Poliakov, TC Ponce, CP Ponting, S Potter, M Quail, A Reymond, BA Roe, KM Roskin, EM Rubin, AG Rust, R Santos, V Sapojnikov, B Schultz, J Schultz, MS Schwartz, S Schwartz, C Scott, S Seaman, S Searle, T Sharpe, A Sheridan, R Shownkeen, S Sims, JB Singer, G Slater, A Smit, DR Smith, B Spencer, A Stabenau, N Stange-Thomann, C Sugnet, M Suyama, G Tesler, J Thompson, D Torrents, E Trevaskis, J Tromp, C Ucla, A Ureta-Vidal, JP Vinson, AC Von Niederhausern, CM Wade, M Wall, RJ Weber, RB Weiss, MC Wendl, AP West, K Wetterstrand, R Wheeler, S Whelan, J Wierzbowski, D Willey, S Williams, RK Wilson, E Winter, KC Worley, D Wyman, S Yang, SP Yang, EM Zdobnov, MC Zody, ES Lander,

posted to comparative_genomics genome mouse sequence whole_genome by aprasad on 2005-12-19 22:13:07 as along with 17 people and 2 groups dkulp sdinka Cortel jwortman Dax42 ccots indigoviolet adepace treangen joshuashen djkt stajich olympos hausen yoanjacquemin elfar OriginalLurch EisenLab Berkeley Mycology

Gene (13 June 2007)

by Maria Costantini, Miriam Di D Filippo, Fabio Auletta, Giorgio Bernardi

posted to chicken gc isochore whole_genome by aprasad on 2007-07-23 13:32:08 as

PLoS Genet, Vol. 2, No. 4. (April 2006)

by MS Taylor, C Kai, J Kawai, P Carninci, Y Hayashizaki, CA Semple

posted to evolution indel mammal mutation_rate promoter regulatory whole_genome by aprasad on 2006-06-27 13:35:17 as along with 4 people and 1 group kentsis olympos cisevol gjuggler cis-regulatory-evolution

Genome Res, Vol. 16, No. 2. (February 2006), pp. 164-172.

by C Simons, M Pheasant, IV Makunin, JS Mattick

posted to genome genome_evolution repeats retrotransposon transposon whole_genome by aprasad on 2006-05-09 13:55:57 as along with 5 people and 3 groups tuck andersbj dchughes mtagaya elzodw microRNA G4ID Genetics-of-Gambling

Nature, Vol. 438, No. 7069., pp. 803-819.

by Kerstin Lindblad-Toh, Claire M Wade, Tarjei S Mikkelsen, Elinor K Karlsson, David B Jaffe, Michael Kamal, Michele Clamp, Jean L Chang, Edward J Kulbokas, Michael C Zody, Evan Mauceli, Xiaohui Xie, Matthew Breen, Robert K Wayne, Elaine A Ostrander, Chris P Ponting, Francis Galibert, Douglas R Smith, Pieter J Dejong, Ewen Kirkness, Pablo Alvarez, Tara Biagi, William Brockman, Jonathan Butler, Chee-Wye Chin, April Cook, James Cuff, Mark J Daly, David Decaprio, Sante Gnerre, Manfred Grabherr, Manolis Kellis, Michael Kleber, Carolyne Bardeleben, Leo Goodstadt, Andreas Heger, Christophe Hitte, Lisa Kim, Klaus-Peter Koepfli, Heidi G Parker, John P Pollinger, Stephen MJ Searle, Nathan B Sutter, Rachael Thomas, Caleb Webber, Eric S Lander

posted to comparative_genomics dog genome genome_size sequence whole_genome by aprasad on 2005-12-19 22:11:03 as along with 5 people and 7 groups indigoviolet dchughes neveaire mini1000srule djkt Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience G4ID Genetics-of-Gambling

Nature, Vol. 428, No. 6982. (1 April 2004), pp. 493-521.

by RA Gibbs, GM Weinstock, ML Metzker, DM Muzny, EJ Sodergren, S Scherer, G Scott, D Steffen, KC Worley, PE Burch, G Okwuonu, S Hines, L Lewis, C DeRamo, O Delgado, S Dugan-Rocha, G Miner, M Morgan, A Hawes, R Gill, Celera, RA Holt, MD Adams, PG Amanatides, H Baden-Tillson, M Barnstead, S Chin, CA Evans, S Ferriera, C Fosler, A Glodek, Z Gu, D Jennings, CL Kraft, T Nguyen, CM Pfannkoch, C Sitter, GG Sutton, JC Venter, T Woodage, D Smith, HM Lee, E Gustafson, P Cahill, A Kana, L Doucette-Stamm, K Weinstock, K Fechtel, RB Weiss, DM Dunn, ED Green, RW Blakesley, GG Bouffard, PJ De Jong, K Osoegawa, B Zhu, M Marra, J Schein, I Bosdet, C Fjell, S Jones, M Krzywinski, C Mathewson, A Siddiqui, N Wye, J McPherson, S Zhao, CM Fraser, J Shetty, S Shatsman, K Geer, Y Chen, S Abramzon, WC Nierman, PH Havlak, R Chen, KJ Durbin, A Egan, Y Ren, XZ Song, B Li, Y Liu, X Qin, S Cawley, KC Worley, AJ Cooney, LM D'Souza, K Martin, JQ Wu, ML Gonzalez-Garay, AR Jackson, KJ Kalafus, MP McLeod, A Milosavljevic, D Virk, A Volkov, DA Wheeler, Z Zhang, JA Bailey, EE Eichler, E Tuzun, E Birney, E Mongin, A Ureta-Vidal, C Woodwark, E Zdobnov, P Bork, M Suyama, D Torrents, M Alexandersson, BJ Trask, JM Young, H Huang, H Wang, H Xing, S Daniels, D Gietzen, J Schmidt, K Stevens, U Vitt, J Wingrove, F Camara, M Mar Albà, JF Abril, R Guigo, A Smit, I Dubchak, EM Rubin, O Couronne, A Poliakov, N Hübner, D Ganten, C Goesele, O Hummel, T Kreitler, YA Lee, J Monti, H Schulz, H Zimdahl, H Himmelbauer, H Lehrach, HJ Jacob, S Bromberg, J Gullings-Handley, MI Jensen-Seaman, AE Kwitek, J Lazar, D Pasko, PJ Tonellato, S Twigger, CP Ponting, JM Duarte, S Rice, L Goodstadt, SA Beatson, RD Emes, EE Winter, C Webber, P Brandt, G Nyakatura, M Adetobi, F Chiaromonte, L Elnitski, P Eswara, RC