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Tag snp [641 articles]

Articoli recentemente classificati sotto il tag snp.
  • notes SNPs3D: Candidate gene and SNP selection for association studies
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Peng Yue, Eugene Melamud, John Moult
    posted to candidate gene selection snp by Zephyrus on 2008-07-17 03:26:49 as **** along with 3 people and 1 group jyuh massivemayhem cat_worth structural_bioinformatics
  • Allelic association and disease mapping.
    Brief Bioinform, Vol. 2, No. 4. (December 2001), pp. 375-387.
    by S Ennis, N Maniatis, A Collins
    posted to disease mapping snp by Yumyai on 2008-04-14 19:55:31 as *** along with 1 group Bioinformatics
  • Deleterious SNP prediction: be mindful of your training data!
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 664-672.
    by Care, A Matthew, Needham, J Chris, Bulpitt, J Andrew, Westhead, R David
    posted to data mining snp by Yumyai on 2008-04-14 09:00:26 as ** along with 3 people and 2 groups marcius penka happy_manatee BioinfoCIPF SGU-CIPF
  • Age-related macular degeneration is associated with an unstable ARMS2 (LOC387715) mRNA.
    Nature genetics (30 May 2008)
    by Lars G G Fritsche, Thomas Loenhardt, Andreas Janssen, Sheila A A Fisher, Andrea Rivera, Claudia N N Keilhauer, Bernhard H F H Weber
    posted to degeneration htra1 macular snp by ykaminoh on 2008-06-24 20:23:59 as **
  • Geography and genography: Prediction of continental origin using randomly selected single nucleotide polymorphisms
    BMC Genomics, Vol. 8 (10 March 2007), 68.
    by Dominic J Allocco, Qing Song, Gary H Gibbons, Marco F Ramoni, Isaac S Kohane
    posted to genography geography snp by yife on 2007-11-06 02:06:02 as ** along with 2 people fmacciardi pradiptaray
  • Copy Number Variation Detection via High-Density SNP Genotyping
    Cold Spring Harbor Protocols, Vol. 2008, No. 7. (1 June 2008), pdb.top46.
    by Kai Wang, Maja Bucan
    posted to cnv genotyping snp by waszak on 2008-07-19 22:21:28 as **
  • Genome-Wide Detection of Polymorphisms at Nucleotide Resolution with a Single DNA Microarray
    Science, Vol. 311, No. 5769. (31 March 2006), pp. 1932-1936.
    by David Gresham, Douglas M Ruderfer, Stephen C Pratt, Joseph Schacherer, Maitreya J Dunham, David Botstein, Leonid Kruglyak
    posted to snp by vesper on 2007-12-07 19:01:31 as **** along with 8 people and 3 groups stevanspringer ccots RMGraze dchughes gandhih nirfriedman Billemann djkt FAB-lab G4ID Genetics-of-Gambling
  • Genotype, haplotype and copy-number variation in worldwide human populations
    Nature, Vol. 451, No. 7181. (21 February 2008), pp. 998-1003.
    by Mattias Jakobsson, Sonja W Scholz, Paul Scheet, Raphael J Gibbs, Jenna M Vanliere, Hon-Chung Fung, Zachary A Szpiech, James H Degnan, Kai Wang, Rita Guerreiro, Jose M Bras, Jennifer C Schymick, Dena G Hernandez, Bryan J Traynor, Javier Simon-Sanchez, Mar Matarin, Angela Britton, Joyce van de Leemput, Ian Rafferty, Maja Bucan, Howard M Cann, John A Hardy, Noah A Rosenberg, Andrew B Singleton
    posted to genetics snp by thomaskelder on 2008-02-26 10:26:49 as ** along with 7 people and 1 group djkt ramensky mailund Archaeogenetics jo_davies jyuh frohike Fasting, food and evolution
  • Toward genome-wide SNP genotyping.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by AC Syvänen
    posted to genomique snp by textoris on 2005-06-27 19:16:45 as ** along with 2 people BioGeek euphorium
  • A genome-wide scalable SNP genotyping assay using microarray technology
    Nature Genetics, Vol. 37, No. 5. (17 April 2005), pp. 549-554.
    by Kevin L Gunderson, Frank J Steemers, Grace Lee, Leo G Mendoza, Mark S Chee
    posted to genomique snp by textoris on 2005-06-28 08:35:10 as ** along with 1 person pcahan1
  • Genome-wide association studies: theoretical and practical concerns
    Nature Reviews Genetics, Vol. 6, No. 2. (01 February 2005), pp. 109-118.
    by William YS Wang, Bryan J Barratt, David G Clayton, John A Todd
    posted to snp by tabu on 2006-01-17 09:01:53 as ** along with 5 people and 1 group oilcan pcahan1 indigoviolet joepickrell massivemayhem EisenLab
  • The next generation of microarray research: applications in evolutionary and ecological genomics
    Heredity, Vol. aop, No. current.
    by SH Shiu, JO Borevitz,
    posted to microarrays r21 review sfp snp by stsaft on 2008-06-11 00:24:27 as **
  • High-throughput SNP genotyping on universal bead arrays.
    Mutat Res, Vol. 573, No. 1-2. (3 June 2005), pp. 70-82.
    by R Shen, JB Fan, D Campbell, W Chang, J Chen, D Doucet, J Yeakley, M Bibikova, E Wickham Garcia, C McBride, F Steemers, F Garcia, BG Kermani, K Gunderson, A Oliphant
    posted to application snp universal_microarrays by stsaft on 2007-03-27 05:46:21 as **
  • Calibrating the Performance of SNP Arrays for Whole-Genome Association Studies
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000109.
    by Ke Hao, Eric E Schadt, John D Storey
    posted to affy arrays association snp by Stew on 2008-07-07 08:45:06 as **** along with 3 people caseybrown balicea jyuh
  • Linkage disequilibrium sharing and haplotype-tagged SNP portability between populations
    PNAS, Vol. 103, No. 5. (31 January 2006), pp. 1418-1421.
    by Wei Huang, Yungang He, Haifeng Wang, Ying Wang, Yangfan Liu, Yi Wang, Xun Chu, Ying Wang, Liang Xu, Yayun Shen, Xiaoyan Xiong, Hui Li, Bo Wen, Ji Qian, Wentao Yuan, Chenhui Zhang, Yi Wang, Hongquan Jiang, Guoping Zhao, Zhu Chen, Li Jin
    posted to linkage snp by stevanspringer on 2006-02-11 23:01:00 as ** along with 1 group FAB-lab
  • Human SNPs Reveal No Evidence of Frequent Positive Selection
    Mol Biol Evol, Vol. 22, No. 12. (1 December 2005), pp. 2504-2507.
    by Liqing Zhang, Wen-Hsiung Li
    posted to genome selection snp by stevanspringer on 2005-11-11 23:26:45 as ** along with 1 group FAB-lab
  • Genomic scans for selective sweeps using SNP data.
    Genome Res, Vol. 15, No. 11. (November 2005), pp. 1566-1575.
    by R Nielsen, S Williamson, Y Kim, MJ Hubisz, AG Clark, C Bustamante
    posted to genome selection snp by stevanspringer on 2006-02-21 21:52:24 as ** along with 4 people and 3 groups balajis ashandanj ramensky dmc Bioinformatics FAB-lab Durbin group
  • Natural selection of protein structural and functional properties: a SNP perspective
    Genome Biology, Vol. 9, No. 4. (2008)
    by Jinfeng Liu, Yan Zhang, Xingye Lei, Zemin Zhang
    posted to molecular_evolution natural_selection polymorphism snp by stajich on 2008-04-09 00:01:16 as ** along with 4 people and 1 group operon fernan ramensky dandaman Berkeley Mycology
  • Immobilization of Protein Molecules onto Homogeneous and Mixed Carboxylate-Terminated Self-Assembled Monolayers
    Langmuir, Vol. 13, No. 24. (26 November 1997), pp. 6485-6490.
    by N Patel, MC Davies, M Hartshorne, RJ Heaton, CJ Roberts, SJB Tendler, PM Williams
    posted to 1 3 ausams protein_binding snp by sjanusz on 2007-08-14 12:48:33 as ****
  • Error detection in SNP data by considering the likelihood of recombinational history implied by three-site combinations.
    Bioinformatics (17 May 2007)
    by Donna M M Toleno, Peter L L Morrell, Michael T T Clegg
    posted to snp by shigepong on 2007-05-20 15:26:15 as *****
  • Quality scores and SNP detection in sequencing-by-synthesis systems
    Genome Res. (22 January 2008), gr.070227.107.
    by William Brockman, Pablo Alvarez, Sarah Young, Manuel Garber, Georgia Giannoukos, William L Lee, Carsten Russ, Eric S Lander, Chad Nusbaum, David B Jaffe
    posted to detection newseq rna-seq snp by sharpton on 2008-05-19 19:10:25 as ** along with 5 people caseybrown dbensasson bpb Neeperando GustavoLacerda
  • Consensus generation and variant detection by Celera Assembler.
    Bioinformatics (Oxford, England), Vol. 24, No. 8. (15 April 2008), pp. 1035-1040.
    by G Denisov, B Walenz, AL Halpern, J Miller, N Axelrod, S Levy, G Sutton
    posted to detection genome snp by semrich on 2008-07-05 21:50:18 as ***
  • SNP Cutter: a comprehensive tool for SNP PCR-RFLP assay design.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by R Zhang, Z Zhu, H Zhu, T Nguyen, F Yao, K Xia, D Liang, C Liu
    posted to bioinformatics rflp snp software by sebastien_vigneau on 2008-04-03 00:04:15 as read along with 2 people jyuh nstimson
  • High-throughput SNP genotyping by single-tube PCR with Tm-shift primers.
    BioTechniques, Vol. 39, No. 6. (December 2005), pp. 885-893.
    by J Wang, K Chuang, M Ahluwalia, S Patel, N Umblas, D Mirel, R Higuchi, S Germer
    posted to pcr polymorphism snp technology by sebastien_vigneau on 2008-06-18 03:40:10 as **
  • WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations
    BMC Genomics, Vol. 8 (14 August 2007), 275.
    by Pongsakorn Wangkumhang, Kridsadakorn Chaichoompu, Chumpol Ngamphiw, Uttapong Ruangrit, Juntima Chanprasert, Anunchai Assawamakin, Sissades Tongsima
    posted to bioinformatics pcr snp software by sebastien_vigneau on 2008-04-03 00:16:27 as read along with 1 person jyuh
  • Single nucleotide polymorphism genotyping using allele-specific PCR and fluorescence melting curves.
    BioTechniques, Vol. 34, No. 5. (May 2003), pp. 1068-1072.
    by AC Papp, JK Pinsonneault, G Cooke, W Sadée
    posted to pcr polymorphism snp technology by sebastien_vigneau on 2008-06-18 03:41:49 as ***
  • SNPbox: a modular software package for large-scale primer design.
    Bioinformatics, Vol. 21, No. 3. (1 February 2005), pp. 385-387.
    by S Weckx, P De Rijk, C Van Broeckhoven, J Del-Favero
    posted to high-throughput pcr polymorphism sequencing snp software by sebastien_vigneau on 2008-06-06 03:05:28 as **** along with 1 person jyuh
  • Melting curve analysis of SNPs (McSNP): a gel-free and inexpensive approach for SNP genotyping.
    BioTechniques, Vol. 30, No. 2. (February 2001)
    by JM Akey, D Sosnoski, E Parra, S Dios, K Hiester, B Su, C Bonilla, L Jin, MD Shriver
    posted to genotyping pcr polymorphism snp technology by sebastien_vigneau on 2008-06-18 03:36:02 as ****
  • The PCR suite.
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 591-593.
    by MJ van Baren, P Heutink
    posted to pcr primer sequencing snp software by sebastien_vigneau on 2008-06-06 03:23:43 as read along with 1 person jyuh
  • Development of a real-time polymerase chain reaction-based method for the measurement of relative allelic expression and identification of CYP2A13 alleles with decreased expression in human lung.
    The Journal of pharmacology and experimental therapeutics, Vol. 311, No. 1. (October 2004), pp. 373-381.
    by X Zhang, M Caggana, TL Cutler, X Ding
    posted to cyp2a13 genotyping pcr polymorphism snp technology by sebastien_vigneau on 2008-06-18 03:37:38 as ***
  • Single-tube genotyping without oligonucleotide probes.
    Genome research, Vol. 9, No. 1. (January 1999), pp. 72-78.
    by S Germer, R Higuchi
    posted to genotyping pcr polymorphism snp technology by sebastien_vigneau on 2008-06-18 03:42:37 as **
  • An efficient procedure for genotyping single nucleotide polymorphisms.
    Nucleic acids research, Vol. 29, No. 17. (1 September 2001)
    by S Ye, S Dhillon, X Ke, AR Collins, IN Day
    posted to bioinformatics pcr snp software by sebastien_vigneau on 2008-04-03 02:17:43 as **
  • RTPrimerDB: the real-time PCR primer and probe database.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 122-123.
    by F Pattyn, F Speleman, A De Paepe, J Vandesompele
    posted to pcr qpcr snp software by sebastien_vigneau on 2008-04-03 00:22:22 as read along with 1 person ecattell
  • A New Approach for Using Genome Scans to Detect Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 5, No. 7. (19 June 2007)
    by Kun Tang, Kevin R R Thornton, Mark Stoneking
    posted to evolution snp by sebastien_vigneau on 2007-07-12 09:05:50 as * along with 4 people and 3 groups brant dchughes madhadron xingxu EisenLab G4ID Genetics-of-Gambling
  • Determination of allele frequency in pooled DNA: comparison of three PCR-based methods.
    BioTechniques, Vol. 39, No. 6. (December 2005), pp. 853-858.
    by S Wilkening, K Hemminki, RK Thirumaran, JL Bermejo, S Bonn, A Försti, R Kumar
    posted to genotyping pcr polymorphism qpcr snp technology by sebastien_vigneau on 2008-06-18 15:36:53 as read
  • Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons.
    Clinical chemistry, Vol. 50, No. 7. (July 2004), pp. 1156-1164.
    by M Liew, R Pryor, R Palais, C Meadows, M Erali, E Lyon, C Wittwer
    posted to genotyping pcr polymorphism snp technology by sebastien_vigneau on 2008-06-18 03:38:34 as ***
  • SNPbox: web-based high-throughput primer design from gene to genome.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by S Weckx, P De Rijk, C Van Broeckhoven, J Del-Favero
    posted to high-throughput pcr polymorphism sequencing snp software by sebastien_vigneau on 2008-06-06 03:14:19 as read along with 2 people jyuh balicea
  • Biodiversity of 20 chicken breeds assessed by SNPs located in gene regions.
    Cytogenet Genome Res, Vol. 117, No. 1-4. (2007), pp. 319-326.
    by T Twito, S Weigend, S Blum, Z Granevitze, MW Feldman, R Perl-Treves, U Lavi, J Hillel
    posted to bioinformatics cnv snp by Schmidtc on 2008-06-04 02:04:53 as ** along with 1 group Bioinformatics
  • Mapping the Genetic Architecture of Gene Expression in Human Liver.
    PLoS biology, Vol. 6, No. 5. (6 May 2008)
    by Eric E E Schadt, Cliona Molony, Eugene Chudin, Ke Hao, Xia Yang, Pek Y Y Lum, Andrew Kasarskis, Bin Zhang, Susanna Wang, Christine Suver, Jun Zhu, Joshua Millstein, Solveig Sieberts, John Lamb, Debraj Guhathakurta, Jonathan Derry, John D D Storey, Iliana Avila-Campillo, Mark J J Kruger, Jason M M Johnson, Carol A A Rohl, Atila van Nas, Margarete Mehrabian, Thomas A A Drake, Aldons J J Lusis, Ryan C C Smith, F Peter P Guengerich, Stephen C C Strom, Erin Schuetz, Thomas H H Rushmore, Roger Ulrich
    posted to epigenetics gene_expression liver snp by Schmidtc on 2008-05-09 18:18:34 as ** along with 9 people semrich ddunbar caseybrown vplagnol ptrobajo Jonesy jyuh inesdesantiago hdopazo
  • Simultaneous Analysis of All SNPs in Genome-Wide and Re-Sequencing Association Studies
    PLoS Genet, Vol. 4, No. 7. (25 July 2008), e1000130.
    by Clive J Hoggart, John C Whittaker, Maria De Iorio, David J Balding
    posted to snp by Schmidtc on 2008-08-29 14:01:15 as ** along with 3 people djkt Stew jyuh
  • SNP-specific extraction of haplotype-resolved targeted genomic regions
    Nucl. Acids Res. (8 July 2008), gkn345.
    by Johannes Dapprich, Deborah Ferriola, Eleni E Magira, Mark Kunkel, Dimitri Monos
    posted to haplotype snp by sbozdag on 2008-07-08 18:59:14 as **
  • Whole-Genome Patterns of Common DNA Variation in Three Human Populations
    Science, Vol. 307, No. 5712. (18 February 2005), pp. 1072-1079.
    by David A Hinds, Laura L Stuve, Geoffrey B Nilsen, Eran Halperin, Eleazar Eskin, Dennis G Ballinger, Kelly A Frazer, David R Cox
    posted to genetics genome human snp by saxonov on 2005-06-17 21:07:41 as *** along with 6 people and 1 group jshapiro mercaptan akeyj Archaeogenetics hdopazo djkt BioinfoCIPF
  • Genome-wide selection of tag SNPs using multiple-marker correlation
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3178-3184.
    by K Hao
    posted to snp tagsnp by ryanraaum on 2007-11-27 12:51:39 as ** along with 1 person jyuh
  • A genomewide single-nucleotide-polymorphism panel for Mexican American admixture mapping.
    Am J Hum Genet, Vol. 80, No. 6. (June 2007), pp. 1014-1023.
    by C Tian, DA Hinds, R Shigeta, SG Adler, A Lee, MV Pahl, G Silva, JW Belmont, RL Hanson, WC Knowler, PK Gregersen, DG Ballinger, MF Seldin
    posted to admixture aim association disease mapping population-structure race snp to-get by ryanraaum on 2007-06-29 14:03:46 as **
  • Large-Scale SNP Genotyping with Canine Buccal Swab DNA
    J Hered, Vol. 98, No. 5. (1 July 2007), pp. 428-437.
    by Melanie L Chang, Rebecca L Terrill, Maria M Bautista, Elaine J Carlson, Donna J Dyer, Karen L Overall, Steven P Hamilton
    posted to breeds buccal-swab dogs ld population-structure snp by ryanraaum on 2007-08-30 14:07:13 as **
  • Nucleotide diversity of the TNF gene region in an African village.
    Genes Immun, Vol. 2, No. 6. (October 2001), pp. 343-348.
    by A Richardson, F Sisay-Joof, H Ackerman, S Usen, P Katundu, T Taylor, M Molyneux, M Pinder, D Kwiatkowski
    posted to africa nucleotide-diversity snp by ryanraaum on 2007-10-03 19:56:17 as **
  • BEYOND RACE: TOWARDS A WHOLE-GENOME PERSPECTIVE ON HUMAN POPULATIONS AND GENETIC VARIATION
    Nat Rev Genet, Vol. 5, No. 10. (October 2004), pp. 790-796.
    by Morris W Foster, Richard R Sharp
    posted to population-genomics population-structure race review snp by ryanraaum on 2007-08-09 21:12:33 as ** along with 1 person elsiatcase
  • TAGster: efficient selection of LD tag SNPs in single or multiple populations
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3254-3255.
    by Zongli Xu, Norman L Kaplan, Jack A Taylor
    posted to snp tagsnp by ryanraaum on 2007-11-27 12:52:24 as ** along with 1 person jyuh
  • PCA-Correlated SNPs for Structure Identification in Worldwide Human Populations
    PLoS Genetics, Vol. 3, No. 9. (1 September 2007), e160.
    by Peristera Paschou, Elad Ziv, Esteban G Burchard, Shweta Choudhry, William Rodriguez-Cintron, Michael W Mahoney, Petros Drineas
    posted to admixture hapmap ld methods pca snp structure by ryanraaum on 2007-09-21 13:55:54 as ** along with 2 people dalexander caseybrown
  • Large-scale SNP analysis reveals clustered and continuous patterns of human genetic variation.
    Hum Genomics, Vol. 2, No. 2. (2005), pp. 81-89.
    by Mark D Shriver, Rui Mei, Esteban J Parra, Vibhor Sonpar, Indrani Halder, Sarah A Tishkoff, Theodore G Schurr, Sergev I Zhadanov, Ludmila P Osipova, Tom D Brutsaert, Jonathan Friedlaender, Lynn B Jorde, WS Watkins, Michael J Bamshad, Gerardo Gutierrez, Halina Loi, Hajime Matsuzaki, Rick A Kittles, George Argyropoulos, Jose R Fernandez, Joshua M Akey, Keith W Jones
    posted to association population-structure sampling snp wga by ryanraaum on 2007-08-09 20:59:30 as ** along with 1 person and 1 group cgreal CGREL
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