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Tag rna [806 articles]

Articoli recentemente classificati sotto il tag rna.
  • The evolution of genome compression and genomic novelty in RNA viruses.
    Genome Res (4 September 2007)
    by Robert Belshaw, Oliver G G Pybus, Andrew Rambaut
    posted to evolution genome rna virus by zwang on 2007-10-08 11:04:43 as ** along with 3 people and 1 group dayjm xingxu RedmondSmyth Bioinformatics
  • SimulFold: Simultaneously Inferring RNA Structures Including Pseudoknots, Alignments, and Trees Using a Bayesian MCMC Framework
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e149.
    by Irmtraud M Meyer, István Miklós
    posted to alignment bayesian phylogeny rna structure by zwang on 2007-09-13 17:47:28 as **** along with 3 people bertelsen raylim cabbagezs
  • Rapid selection of accessible and cleavable sites in RNA by Escherichia coli RNase P and random external guide sequences
    Proceedings of the National Academy of Sciences (8 February 2008), 0711977105.
    by Eirik W Lundblad, Gaoping Xiao, Jae-Hyeong Ko, Sidney Altman
    posted to disease ecoli rna rnasep selection sequence by zwang on 2008-02-17 10:56:28 as **** along with 1 person austin
  • Kinetic barriers and the role of topology in Protein and RNA folding.
    Protein Sci (23 May 2008), ps.036319.108.
    by Tobin R Sosnick
    posted to rna protein interaction folding by zwang on 2008-07-01 08:50:56 as *** along with 1 person ARobson
  • Specific binding of a Pop6/Pop7 heterodimer to the P3 stem of the yeast RNase MRP and RNase P RNAs
    RNA (23 August 2007), rna.654407.
    by Anna Perederina, Olga Esakova, Hasan Koc, Mark E Schmitt, Andrey S Krasilnikov
    posted to binding domain rna rnasep site yeast by zwang on 2007-09-02 07:31:22 as *****
  • Characterization of conserved sequence elements in eukaryotic RNase P RNA reveals roles in holoenzyme assembly and tRNA processing.
    RNA, Vol. 11, No. 6. (June 2005), pp. 885-896.
    by S Xiao, JJ Day-Storms, C Srisawat, CA Fierke, DR Engelke
    posted to element eukaryota rna rnasep sequence by zwang on 2007-07-26 11:40:48 as ****
  • Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)
    Nature Biotechnology, Vol. 26, No. 3. (07 March 2008), pp. 305-312.
    by Eric W Deutsch, Catherine A Ball, Jules J Berman, Steven G Bova, Alvis Brazma, Roger E Bumgarner, David Campbell, Helen C Causton, Jeffrey H Christiansen, Fabrice Daian, Delphine Dauga, Duncan R Davidson, Gregory Gimenez, Young A Goo, Sean Grimmond, Thorsten Henrich, Bernhard G Herrmann, Michael H Johnson, Martin Korb, Jason C Mills, Asa J Oudes, Helen E Parkinson, Laura E Pascal, Nicolas Pollet, John Quackenbush, Mirana Ramialison, Martin Ringwald, David Salgado, Susanna-Assunta Sansone, Gavin Sherlock, Christian J Stoeckert, Jason Swedlow, Ronald C Taylor, Laura Walashek, Anthony Warford, David G Wilkinson, Yi Zhou, Leonard I Zon, Alvin Y Liu, Lawrence D True
    posted to immunohistochemistry protein rna by zwang on 2008-03-19 14:26:07 as ** along with 4 people and 1 group jyuh jfr psique katerinakal parkinson's disease references
  • Structural basis for transcription elongation by bacterial RNA polymerase
    Nature (20 June 2007)
    by Dmitry G Vassylyev, Marina N Vassylyeva, Anna Perederina, Tahir H Tahirov, Irina Artsimovitch
    posted to bacterial rna structure transcription by zwang on 2007-08-28 03:59:15 as * along with 2 people margaritis Jporci
  • Structural basis for substrate loading in bacterial RNA polymerase
    Nature (20 June 2007)
    by Dmitry G Vassylyev, Marina N Vassylyeva, Jinwei Zhang, Murali Palangat, Irina Artsimovitch, Robert Landick
    posted to bacterial rna structure by zwang on 2007-08-28 03:58:36 as * along with 2 people margaritis Jporci
  • Using viral species specificity to define a critical protein/RNA interaction surface
    Genes Dev., Vol. 15, No. 10. (15 May 2001), pp. 1194-1205.
    by Glen A Coburn, Heather L Wiegand, Yibin Kang, Dona N Ho, Millie M Georgiadis, Bryan R Cullen
    posted to interaction interface protein rna surface virus by zwang on 2007-10-12 08:53:11 as ****
  • RNA visualization in live bacterial cells using fluorescent protein complementation
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 421-427.
    by Maria Valencia-Burton, Ron M Mccullough, Charles R Cantor, Natalia E Broude
    posted to bacterial fluorescent protein rna visualization by zwang on 2007-04-27 12:18:51 as **** along with 4 people austin medelyan jyuh madhadron
  • Imaging dynamics of endogenous mitochondrial RNA in single living cells
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 413-419.
    by Takeaki Ozawa, Yutaka Natori, Moritoshi Sato, Yoshio Umezawa
    posted to dynamics endogenous rna visualization by zwang on 2007-04-27 12:17:46 as *** along with 1 person peterlowey
  • A genomic integration method to visualize localization of endogenous mRNAs in living yeast
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 409-412.
    by Liora Haim, Gadi Zipor, Stella Aronov, Jeffrey E Gerst
    posted to endogenous localization rna visualization yeast by zwang on 2007-04-27 12:17:13 as *** along with 1 person jyuh
  • The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
    Nature, Vol. 452, No. 7183., pp. 51-55.
    by Marc Parisien, François Major
    posted to prediction rna sequence structure by zwang on 2008-03-07 02:48:26 as *** along with 3 people reyez austin elfar
  • Genome-Wide Mapping of in Vivo Protein-DNA Interactions
    Science (31 May 2007), 1141319.
    by David S Johnson, Ali Mortazavi, Richard M Myers, Barbara Wold
    posted to genome interaction protein rna by zwang on 2007-06-09 08:08:23 as **** along with 18 people and 5 groups dquest aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem epigenetics biomcgary george_g cabbagezs Jporci blobbybirdman caseybrown emptyhb Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group
  • Structural inference of native and partially folded RNA by high-throughput contact mapping
    Proceedings of the National Academy of Sciences, Vol. 105, No. 11. (18 March 2008), pp. 4144-4149.
    by Rhiju Das, Madhuri Kudaravalli, Magdalena Jonikas, Alain Laederach, Robert Fong, Jason P Schwans, David Baker, Joseph A Piccirilli, Russ B Altman, Daniel Herschlag
    posted to contact folding rna structure by zwang on 2008-03-20 13:00:39 as ***** along with 1 person and 1 group wsjames Oxford Virology
  • Predicting novel RNA-RNA interactions.
    Current opinion in structural biology (14 May 2008)
    by Irmtraud M M Meyer
    posted to structure rna prediction interaction by zwang on 2008-06-16 03:49:12 as ***** along with 1 person marck
  • Inhibition of Escherichia coli RNase P by oligonucleotide directed misfolding of RNA
    RNA, Vol. 9, No. 12. (1 December 2003), pp. 1437-1445.
    by Jessica L Childs, Alex W Poole, Douglas H Turner
    posted to bacterial folding rna rnasep by zwang on 2008-03-11 05:35:11 as ****
  • Targeted Cleavage of mRNA by Human RNase P
    Proceedings of the National Academy of Sciences, Vol. 89, No. 17. (1 September 1992), pp. 8006-8010.
    by Y Yuan, E Hwang, S Altman
    posted to human rna rnasep by zwang on 2008-03-11 05:28:37 as **
  • A modular and extensible RNA-based gene-regulatory platform for engineering cellular function
    PNAS (20 August 2007), 0703961104.
    by Maung N Win, Christina D Smolke
    posted to gene regulatory rna by zwang on 2007-08-25 03:58:38 as * along with 4 people and 2 groups austin dchughes kengg Jporci G4ID Genetics-of-Gambling
  • Suppression of the MicroRNA Pathway by Bacterial Effector Proteins
    Science, Vol. 321, No. 5891. (15 August 2008), pp. 964-967.
    by Lionel Navarro, Florence Jay, Kinya Nomura, Sheng Y He, Olivier Voinnet
    posted to rna protein bacterial by zwang on 2008-08-16 07:33:15 as ** along with 1 person erel10
  • Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes
    Science, Vol. 321, No. 5891. (15 August 2008), pp. 960-964.
    by Stan J Brouns, Matthijs M Jore, Magnus Lundgren, Edze R Westra, Rik J Slijkhuis, Ambrosius P Snijders, Mark J Dickman, Kira S Makarova, Eugene V Koonin, John van der Oost
    posted to rna prokaryote by zwang on 2008-08-16 07:30:42 as ** along with 1 person neils
  • Single-molecule nonequilibrium periodic Mg2+-concentration jump experiments reveal details of the early folding pathways of a large RNA
    Proceedings of the National Academy of Sciences (30 April 2008), 0801436105.
    by Xiaohui Qu, Glenna J Smith, Kang T Lee, Tobin R Sosnick, Tao Pan, Norbert F Scherer
    posted to singlemolecule rnasep rna fret fluorescent by zwang on 2008-05-05 14:20:56 as **
  • Escherichia coli RNase P RNA: Substrate Ribose Modifications at G+1, but Not Nucleotide - 1/+73 Base Pairing, Affect the Transition State for Cleavage Chemistry
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by Simona Cuzic, Karin A Heidemann, Jens Wöhnert, Roland K Hartmann
    posted to rnasep rna mutation ecoli by zwang on 2008-05-05 14:16:50 as ****
  • Recombinant RNA expression
    Nature Methods, Vol. 4, No. 7., pp. 547-548.
    by Christine M Dunham, Graeme L Conn
    posted to invivo protection rna transcription by zwang on 2007-06-30 11:44:40 as ***
  • A map of human protein interactions derived from co-expression of human mRNAs and their orthologs
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Arun K Ramani, Zhihua Li, Traver G Hart, Mark W Carlson, Daniel R Boutz, Edward M Marcotte
    posted to rna protein ortholog interaction by zwang on 2008-06-13 12:18:37 as ** along with 7 people and 1 group ptrobajo grahamc ardalby giovanni tmmurali biomcgary phoenixzxl OPIG
  • Synthetic antibodies for specific recognition and crystallization of structured RNA
    Proceedings of the National Academy of Sciences, Vol. 105, No. 1. (8 January 2008), pp. 82-87.
    by Jing-Dong Ye, Valentina Tereshko, John K Frederiksen, Akiko Koide, Frederic A Fellouse, Sachdev S Sidhu, Shohei Koide, Anthony A Kossiakoff, Joseph A Piccirilli
    posted to antibody protein rna structure by zwang on 2008-01-10 14:30:57 as ***
  • Molecular dynamics simulations of nucleic acid-protein complexes
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Mackerell, Lennart Nilsson
    posted to complex dna dynamics protein rna by zwang on 2008-02-27 02:28:21 as *** along with 3 people and 1 group ruvido sobolevnrm phoenixzxl baker-group
  • A Computational Pipeline for High- Throughput Discovery of cis-Regulatory Noncoding RNA in Prokaryotes
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e126.
    by Zizhen Yao, Jeffrey Barrick, Zasha Weinberg, Shane Neph, Ronald Breaker, Martin Tompa, Walter L Ruzzo
    posted to bacterial insilico ncrna regulatory rna by zwang on 2007-08-29 02:30:33 as * along with 4 people sebastien_vigneau lp2 cabbagezs blobbybirdman
  • A Conserved Element in the Yeast RNase MRP RNA Subunit can Participate in a Long-range Base-pairing Interaction
    Journal of Molecular Biology, Vol. 341, No. 2. (6 August 2004), pp. 375-388.
    by Scott C Walker, Johanna M Avis
    posted to element interaction rna rnasep subunit yeast by zwang on 2007-07-26 19:21:56 as ****
  • RNA-mediated epigenetic programming of a genome-rearrangement pathway
    Nature (28 November 2007)
    by Mariusz Nowacki, Vikram Vijayan, Yi Zhou, Klaas Schotanus, Thomas G Doak, Laura F Landweber
    posted to epigenetics genome pathway rna by zwang on 2008-01-10 01:42:38 as ** along with 6 people balicea mtagaya sebastien_vigneau margaritis rebeccamancy rschulz
  • Genome-Wide Profiling and Analysis of Arabidopsis siRNAs
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e57.
    by Kristin D Kasschau, Noah Fahlgren, Elisabeth J Chapman, Christopher M Sullivan, Jason S Cumbie, Scott A Givan, James C Carrington
    posted to genome-wide rna by zwang on 2007-04-19 15:08:21 as *
  • Mammalian RNA polymerase II core promoters: insights from genome-wide studies
    Nature Reviews Genetics, Vol. 8, No. 6. (08 May 2007), pp. 424-436.
    by Albin Sandelin, Piero Carninci, Boris Lenhard, Jasmina Ponjavic, Yoshihide Hayashizaki, David A Hume
    posted to genome-wide promoter rna by zwang on 2007-06-14 05:24:21 as ** along with 6 people and 3 groups idonaldson GeeSharpMinor dchughes xiaobeizhao cabbagezs cisevol G4ID Genetics-of-Gambling cis-regulatory-evolution
  • A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis
    Proceedings of the National Academy of Sciences, Vol. 104, No. 40. (2 October 2007), pp. 15711-15716.
    by Amit Ghosh, Saraswathi Vishveshwara
    posted to network protein rna simulation structure by zwang on 2007-11-01 07:34:35 as ** along with 3 people and 1 group phoenixzxl cactus sobolevnrm baker-group
  • Evaluating and Learning from RNA Pseudotorsional Space: Quantitative Validation of a Reduced Representation for RNA Structure
    Journal of Molecular Biology, Vol. 372, No. 4. (28 September 2007), pp. 942-957.
    by Leven M Wadley, Kevin S Keating, Carlos M Duarte, Anna M Pyle
    posted to prediction rna structure by zwang on 2007-11-01 07:34:03 as ** along with 1 person reyez
  • Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes
    Nucl. Acids Res., Vol. 35, No. 7. (1 April 2007), pp. 2283-2294.
    by Yanglong Zhu, Dileep K Pulukkunat, Yong Li
    posted to diversity phylogeny rna structure by zwang on 2007-05-08 12:14:37 as ***
  • Ribozymes, riboswitches and beyond: regulation of gene expression without proteins
    Nature Reviews Genetics, Vol. 8, No. 10. (11 September 2007), pp. 776-790.
    by Alexander Serganov, Dinshaw J Patel
    posted to expression gene regulation ribozyme rna by zwang on 2007-11-01 07:15:05 as *** along with 4 people and 3 groups grahamc austin dbikard jmrivort G-quadruplex Supramolecular SynBioSys
  • From the Cover: Eukaryotic RNase P RNA mediates cleavage in the absence of protein
    PNAS, Vol. 104, No. 7. (13 February 2007), pp. 2062-2067.
    by Ema Kikovska, Staffan G Svard, Leif A Kirsebom
    posted to eukaryota rna rnasep by zwang on 2007-03-19 13:34:23 as ****
  • Interaction of signal-recognition particle 54 GTPase domain and signal-recognition particle RNA in the free signal-recognition particle
    Proceedings of the National Academy of Sciences, Vol. 104, No. 38. (18 September 2007), pp. 14911-14916.
    by Tobias Hainzl, Shenghua Huang, Elisabeth A Sauer-Eriksson
    posted to domain interaction rna by zwang on 2007-11-01 02:11:19 as **
  • Automated de novo prediction of native-like RNA tertiary structures
    PNAS (28 August 2007), 0703836104.
    by Rhiju Das, David Baker
    posted to prediction rna structure by zwang on 2007-08-31 16:23:25 as **** along with 6 people and 2 groups reyez jwm marcius eckart_bindewald physics Ema BioinfoCIPF SGU-CIPF
  • Structural Principles from Large RNAs
    Annual Review of Biophysics, Vol. 37, No. 1. (2008)
    by Stephen R Holbrook
    posted to structure secondary rna by zwang on 2008-05-08 09:57:07 as *****
  • Structure of Eukaryotic RNA Polymerases
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 337-352.
    by P Cramer, KJ Armache, S Baumli, S Benkert, F Brueckner, C Buchen, GE Damsma, S Dengl, SR Geiger, AJ Jasiak, A Jawhari, S Jennebach, T Kamenski, H Kettenberger, CD Kuhn, E Lehmann, K Leike, JF Sydow, A Vannini
    posted to structure rna eukaryota by zwang on 2008-05-08 09:54:27 as **
  • RNA Folding: Conformational Statistics, Folding Kinetics, and Ion Electrostatics
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 197-214.
    by Shi J Chen
    posted to rna folding by zwang on 2008-05-08 09:53:36 as ***
  • Riboswitches: Emerging Themes in RNA Structure and Function
    Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 117-133.
    by Rebecca K Montange, Robert T Batey
    posted to structure rna by zwang on 2008-05-08 09:48:18 as ****
  • Multiple structural alignment and clustering of RNA sequences.
    Bioinformatics (25 February 2007)
    by Elfar Torarinsson, Jakob H H Havgaard, Jan Gorodkin
    posted to alignment clustering rna structure by zwang on 2007-05-01 06:10:22 as ** along with 7 people and 2 groups marcius eckart_bindewald eweaver ppgardne ilh dunnp zhouyu BioinfoCIPF SGU-CIPF
  • Ionic interactions between PRNA and P protein in Bacillus subtilis RNase P characterized using a magnetocapture-based assay
    RNA, Vol. 10, No. 10. (1 October 2004), pp. 1595-1608.
    by Jeremy J Day-Storms, S Niranjanakumari, Carol A Fierke
    posted to bacterial interaction magnetic protein rna rnasep by zwang on 2008-03-21 07:55:58 as *****
  • Characterization of RNase P from Thermotoga maritima
    Nucl. Acids Res., Vol. 29, No. 4. (15 February 2001), pp. 880-885.
    by Ralf Paul, Denis Lazarev, Sidney Altman
    posted to protein rna rnasep by zwang on 2008-03-21 07:55:05 as *****
  • The Ascent of the Abundant: How Mutational Networks Constrain Evolution
    PLoS Comput Biol, Vol. 4, No. 7. (18 July 2008), e1000110.
    by Matthew C Cowperthwaite, Evan P Economo, William R Harcombe, Eric L Miller, Lauren A Meyers
    posted to rna network mutation modeling evolution by zwang on 2008-07-22 06:59:06 as ** along with 6 people shoshin provero biomcgary friendpine djkt Ema
  • Query-Dependent Banding (QDB) for Faster RNA Similarity Searches
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e56.
    by Eric P Nawrocki, Sean R Eddy
    posted to rna similarity by zwang on 2007-03-31 14:17:49 as * along with 1 person elfar
  • Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
    BMC Bioinformatics, Vol. 8 (19 April 2007), 130.
    by Arif O Harmanci, Gaurav Sharma, David H Mathews
    posted to prediction rna structure by zwang on 2007-05-29 12:26:56 as **
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