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Tag protein_evolution [117 articles]

Articoli recentemente classificati sotto il tag protein_evolution.
  • Splicing and the Evolution of Proteins in Mammals
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e14.
    by Joanna L Parmley, Araxi O Urrutia, Lukasz Potrzebowski, Henrik Kaessmann, Laurence D Hurst
    posted to evolution intron phylogenetics protein protein_evolution alternative_splicing by stajich on 2007-06-27 05:34:01 as ** along with 7 people and 7 groups operon aalibes dpollard dchughes kehan jwestbrook gileswl biodiversity_conservation Bioinformatics EisenLab G4ID King_Lab GrassBase Genetics-of-Gambling
  • An Improved General Amino Acid Replacement Matrix
    Mol Biol Evol, Vol. 25, No. 7. (1 July 2008), pp. 1307-1320.
    by Si Q Le, Olivier Gascuel
    posted to bioinformatics evolution methods molecular_evolution phylogenetics protein_evolution by stajich on 2008-06-14 07:08:00 as ** along with 2 people and 1 group friendpine dmp Berkeley Mycology
  • Evolution of a family of metazoan active-site-serine enzymes from penicillin-binding proteins: a novel facet of the bacterial legacy
    BMC Evolutionary Biology, Vol. 8, No. 1. (2008)
    by Nina Peitsaro, Zydrune Polianskyte, Jarno Tuimala, Isabella P Ares, Julius Liobikas, Oliver Speer, Dan Lindholm, James Thompson, Ove Eriksson
    posted to enzyme evolution metazoan protein_evolution by stajich on 2008-01-29 16:41:37 as ** along with 1 group Berkeley Mycology
  • A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast.
    Genome Res, Vol. 18, No. 1. (January 2008), pp. 137-147.
    by DR Scannell, KH Wolfe
    posted to duplication genome_evolution protein_evolution saccharomyces whole_genome yeast by stajich on 2008-03-10 17:52:44 as ** along with 3 people and 1 group djkt dandaman gjuggler Berkeley Mycology
  • Genome mosaicism and organismal lineages
    Trends in Genetics, Vol. 20, No. 5. (01 May 2004), pp. 254-260.
    by Olga Zhaxybayeva, Pascal Lapierre, Peter P Gogarten
    posted to protein_evolution by labedan on 2005-03-11 16:08:58 as ** along with 2 people operon fhsantanna
  • Transposition of hAT elements links transposable elements and V(D)J recombination
    Nature, Vol. 432, No. 7020. (23 December 2004), pp. 995-1001.
    by Liqin Zhou, Rupak Mitra, Peter W Atkinson, Alison B Hickman, Fred Dyda, Nancy L Craig
    posted to evolution immunology protein_evolution transpos by karbak on 2005-01-25 05:20:37 as ****
  • A universal trend of amino acid gain and loss in protein evolution
    Nature, Vol. aop, No. current. (19 January 2005)
    by King K Jordan, Fyodor A Kondrashov, Ivan A Adzhubei, Yuri I Wolf, Eugene V Koonin, Alexey S Kondrashov, Shamil Sunyaev
    posted to amino_acids evolution phylogeny protein_evolution by karbak on 2005-02-10 02:02:47 as *** along with 3 people gisle nagendranow michaelbarton
  • Simulating protein evolution in sequence and structure space.
    Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 202-207.
    by Y Xia, M Levitt
    posted to protein_evolution protein_folding by karbak on 2005-01-18 06:43:09 as ** along with 10 people and 4 groups betainverse korakot mdimmic rmj001 ana barry aalibes gbart analogAI insectopalo Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics
  • Protein structure: evolutionary bridges to new folds.
    Curr Biol, Vol. 17, No. 2. (23 January 2007)
    by TO Yeates
    posted to protein_families protein_evolution by jwm on 2007-02-07 18:03:03 as ** along with 2 groups Radiation_Damage Stressosome
  • Intrinsically unstructured proteins and their functions
    Nature Reviews Molecular Cell Biology, Vol. 6, No. 3. (01 March 2005), pp. 197-208.
    by Jane J Dyson, Peter E Wright
    posted to positive_selection protein_evolution read_next by penka to the group Nie on 2006-06-04 03:11:53 as ***** along with 2 people chad_davis cactus
  • What determines the rate of sequence evolution?
    Curr Biol, Vol. 10, No. 11. (1 June 2000)
    by JF Brookfield
    posted to bio113paper protein_evolution by penka to the group Nie on 2006-02-08 07:38:30 as **
  • Highly expressed genes in yeast evolve slowly.
    Genetics, Vol. 158, No. 2. (June 2001), pp. 927-931.
    by C Pál, B Papp, LD Hurst
    posted to bio113paper expression protein_evolution yeast by penka to the group Nie on 2006-02-24 10:06:09 as ** along with 4 people bjorns lewbin balicea skumagai
  • An analysis of determinants of amino acids substitution rates in bacterial proteins.
    Mol Biol Evol, Vol. 21, No. 1. (January 2004), pp. 108-116.
    by EP Rocha, A Danchin
    posted to bacteria bio113paper protein_evolution by penka to the group Nie on 2006-02-22 08:43:21 as **** along with 4 people bjorns tny jpoyatos skumagai
  • A Single Determinant Dominates the Rate of Yeast Protein Evolution.
    Mol Biol Evol (19 October 2005)
    by D Allan A Drummond, Alpan Raval, Claus O O Wilke
    posted to bio113paper expression kaks protein_evolution yeast by penka to the group Nie on 2006-02-08 07:23:19 as ***** along with 3 people bjorns jpoyatos bicko
  • Converging on a general model of protein evolution.
    Trends Biotechnol, Vol. 23, No. 10. (October 2005), pp. 485-487.
    by JT Herbeck, DP Wall
    posted to bio113paper protein_evolution by penka to the group Nie on 2006-02-22 03:46:19 as *** along with 2 people bjorns i41m
  • The proteins of linked genes evolve at similar rates.
    Nature, Vol. 407, No. 6806. (19 October 2000), pp. 900-903.
    by EJ Williams, LD Hurst
    posted to bio113paper protein_evolution by penka to the group Nie on 2006-02-08 07:26:06 as ** along with 3 people and 1 group stevanspringer bjorns bpcusack FAB-lab
  • Highly goes slowly
    J. Cell Biol., Vol. 171, No. 1. (10 October 2005), 10.
    by William A Wells
    posted to bio113paper protein_evolution by penka to the group Nie on 2006-02-15 09:25:50 as ****
  • Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets.
    BMC Evol Biol, Vol. 3 (2 October 2003)
    by JD Bloom, C Adami
    posted to bio113paper protein_evolution by penka to the group Nie on 2006-02-22 03:19:49 as ** along with 3 people bjorns balajis rsantana
  • Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13526-13531.
    by Y Xing, C Lee
    posted to bio113paper protein_evolution splicing by penka to the group Nie on 2006-02-22 06:37:09 as **** along with 3 people and 2 groups aprasad radek bsmagic Bioinformatics bioinplant
  • Protein Evolution in the Context of <i>Drosophila</i> Development
    Journal of Molecular Evolution, Vol. 60, No. 6. (June 2005), pp. 774-785.
    by Jerel C Davis, Onn Brandman, Dmitri A Petrov
    posted to bio113paper_q drosophila expression protein_evolution by penka to the group Nie on 2006-02-22 03:38:45 as ** along with 1 person imouthesmp
  • Determinants of Adaptive Evolution at the Molecular Level: the Extended Complexity Hypothesis
    Molecular Biology and Evolution, Vol. 22, No. 2., 200.
    by Stephane Aris-Brosou
    posted to bio113paper protein_evolution theory by penka to the group Nie on 2006-02-22 08:59:18 as ****
  • A periodic pattern of mRNA secondary structure created by the genetic code
    Nucl. Acids Res., Vol. 34, No. 8. (8 May 2006), pp. 2428-2437.
    by Svetlana A Shabalina, Aleksey Y Ogurtsov, Nikolay A Spiridonov
    posted to protein_evolution read_next by penka to the group Nie on 2006-06-04 07:29:58 as ** along with 2 people eckart_bindewald raylim
  • Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria
    Genome Res., Vol. 12, No. 6. (1 June 2002), pp. 962-968.
    by King I Jordan, Igor B Rogozin, Yuri I Wolf, Eugene V Koonin
    posted to bio113paper protein_evolution by penka to the group Nie on 2006-02-22 08:42:31 as **** along with 4 people bjorns BarrosH ankur_iitg tfogal
  • Size of the protein-coding genome and rate of molecular evolution.
    J Hum Genet, Vol. 50, No. 5. (2005), pp. 217-229.
    by ZA Rajic, GM Jankovic, A Vidovic, NM Milic, D Skoric, M Pavlovic, V Lazarevic
    posted to bio113paper protein_evolution by penka to the group Nie on 2006-02-22 04:27:59 as ** along with 1 person aprasad
  • Correlated Evolution of Synonymous and Nonsynonymous Sites in Drosophila
    Journal of Molecular Evolution, Vol. 59, No. 6. (December 2004), pp. 771-779.
    by Marais, Gabriel, Domazet-Loso, Tomislav, Tautz, Diethard, Charlesworth, Brian
    posted to bio113paper_q drosophila expression kaks melanogaster protein_evolution by penka to the group Nie on 2006-02-22 03:41:20 as ** along with 1 person bjorns
  • Why highly expressed proteins evolve slowly.
    Proc Natl Acad Sci U S A (21 September 2005)
    by D Allan A Drummond, Jesse D D Bloom, Christoph Adami, Claus O O Wilke, Frances H H Arnold
    posted to bio113paper protein_evolution by penka to the group Nie on 2006-02-22 06:40:50 as ** along with 14 people and 4 groups rklancer stevanspringer bjorns imouthesmp aprasad dayjm Einat marcius xwbcn balabu malcook balicea RamuAnandakrishnan wilbur structural_bioinformatics FAB-lab BioinfoCIPF SGU-CIPF
  • Evolution of the protein repertoire.
    Science, Vol. 300, No. 5626. (13 June 2003), pp. 1701-1703.
    by C Chothia, J Gough, C Vogel, SA Teichmann
    posted to protein_evolution by ana to the group Bioinformatics on 2005-11-19 21:30:23 as read along with 3 people and 1 group karbak barry tny structural_bioinformatics
  • The C-type lectin fold as an evolutionary solution for massive sequence variation
    Nature Structural & Molecular Biology, Vol. 12, No. 10. (18 September 2005), pp. 886-892.
    by Stephen A Mcmahon, Jason L Miller, Jeffrey A Lawton, Donald E Kerkow, Asher Hodes, Marc A Marti-Renom, Sergei Doulatov, Eswar Narayanan, Andrej Sali, Jeff F Miller, Partho Ghosh
    posted to protein_evolution protein_sequence protein_structure by ana to the group Bioinformatics on 2005-10-05 19:51:48 as *** along with 1 person and 3 groups marcius structural_bioinformatics BioinfoCIPF SGU-CIPF
  • Highways of gene sharing in prokaryotes
    PNAS, Vol. 102, No. 40. (4 October 2005), pp. 14332-14337.
    by Robert G Beiko, Timothy J Harlow, Mark A Ragan
    posted to hgt phylogeny protein_evolution protein_sequence by ana to the group Bioinformatics on 2005-11-22 00:44:19 as ***** along with 3 people and 1 group AaronDarling treangen Minty structural_bioinformatics
  • How does a protein fold?
    Nature, Vol. 369, No. 6477. (19 May 1994), pp. 248-251.
    by A Sali, E Shakhnovich, M Karplus
    posted to fold_space protein_evolution protein_folding protein_sequence protein_structure structural_bioinformatics by barry to the group Bioinformatics on 2005-03-16 03:16:39 as ***** along with 1 person and 1 group evaf structural_bioinformatics
  • FtsZ, a prokaryotic homolog of tubulin?
    Cell, Vol. 80, No. 3. (10 February 1995), pp. 367-370.
    by HP Erickson
    posted to cytoskeleton protein_evolution protein_sequence tubulin by barry to the group Bioinformatics on 2005-03-16 02:51:10 as ** along with 1 group structural_bioinformatics
  • Dynamin and FtsZ. Missing links in mitochondrial and bacterial division.
    J Cell Biol, Vol. 148, No. 6. (20 March 2000), pp. 1103-1105.
    by HP Erickson
    posted to cytoskeleton protein_evolution tubulin by barry to the group Bioinformatics on 2005-03-16 03:06:55 as *** along with 1 group structural_bioinformatics
  • Recognition of phylogenetic relationships from polypeptide chain fold similarities.
    J Mol Evol, Vol. 9, No. 4. (5 August 1977), pp. 339-342.
    by GE Schulz
    posted to protein_evolution protein_structure structure_comparison by ana to the group Bioinformatics on 2005-05-03 02:51:06 as ***** along with 1 group structural_bioinformatics
  • Convergent evolution of domain architectures (is rare).
    Bioinformatics (7 December 2004)
    by Julian Gough
    posted to protein_evolution structure_classification structure_comparison by ana to the group Bioinformatics on 2005-05-06 21:54:23 as *** along with 2 people and 1 group matzke barry structural_bioinformatics
  • Structure of bacterial tubulin BtubA/B: evidence for horizontal gene transfer.
    Proc Natl Acad Sci U S A, Vol. 102, No. 26. (28 June 2005), pp. 9170-9175.
    by D Schlieper, MA Oliva, JM Andreu, J Löwe
    posted to cytoskeleton protein_evolution tubulin by barry to the group Bioinformatics on 2005-10-26 00:01:46 as *** along with 1 person and 1 group karfunkel structural_bioinformatics
  • In silico Discovery of Enzyme-Substrate Specificity-determining Residue Clusters
    Journal of Molecular Biology, Vol. 352, No. 5. (7 October 2005), pp. 1105-1117.
    by Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Rajesh Munavalli, Al Geist, Nagiza F Samatova
    posted to bioinf_methods correlated_mutations protein_design protein_evolution protein_sequence sequence_comparison by barry to the group Bioinformatics on 2005-09-15 18:06:44 as **** along with 1 person and 1 group cjeans structural_bioinformatics
  • Intrinsically Disordered Loops Inserted into the Structural Domains of Human Proteins
    Journal of Molecular Biology, Vol. 355, No. 4. (27 January 2006), pp. 845-857.
    by Satoshi Fukuchi, Keiichi Homma, Yoshiaki Minezaki, Ken Nishikawa
    posted to disorder protein_dynamics protein_evolution protein_sequence protein_structure by barry to the group Bioinformatics on 2006-01-02 19:14:30 as *** along with 3 people and 1 group chad_davis tny sotaro structural_bioinformatics
  • Small libraries of protein fragments model native protein structures accurately.
    J Mol Biol, Vol. 323, No. 2. (18 October 2002), pp. 297-307.
    by R Kolodny, P Koehl, L Guibas, M Levitt
    posted to comparative_modeling protein_design protein_evolution protein_structure structure_comparison structure_fragments by ana to the group Bioinformatics on 2005-09-07 17:58:32 as ** along with 3 people and 1 group barry eckart_bindewald j3xucite structural_bioinformatics
  • Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes
    BMC Genomics, Vol. 7 (2006), pp. 18-18.
    by Dale N Richardson, Mark P Simmons, Anireddy S Reddy
    posted to kinesin molecular_motors phylogeny protein_evolution protein_sequence by barry to the group Bioinformatics on 2006-06-12 19:39:17 as ** along with 1 group structural_bioinformatics
  • Detection of hydrogen-bond signature patterns in protein families.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 167-168.
    by T Prasad, MN Prathima, N Chandra
    posted to hydrogen-bond protein_evolution protein_stability protein_structure structure_comparison web_server by ana to the group Bioinformatics on 2005-09-07 20:01:20 as read along with 1 group structural_bioinformatics
  • Evolutionary lines of cysteine peptidases.
    Biol Chem, Vol. 382, No. 5. (May 2001), pp. 727-733.
    by AJ Barrett, ND Rawlings
    posted to molecular_mimicry protein_evolution protein_sequence protein_structure virulence_factor by ana to the group Bioinformatics on 2005-06-20 19:06:44 as **** along with 1 group structural_bioinformatics
  • The relation between the divergence of sequence and structure in proteins.
    EMBO J, Vol. 5, No. 4. (April 1986), pp. 823-826.
    by C Chothia, AM Lesk
    posted to protein_evolution protein_structure structure_comparison by ana to the group Bioinformatics on 2005-03-08 06:47:03 as read along with 7 people and 5 groups pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome BioinfoCIPF SGU-CIPF
  • Darwinian Evolution Can Follow Only Very Few Mutational Paths to Fitter Proteins
    Science, Vol. 312, No. 5770. (7 April 2006), pp. 111-114.
    by Daniel M Weinreich, Nigel F Delaney, Mark A Depristo, Daniel L Hartl
    posted to protein_design protein_evolution protein_sequence by barry to the group Bioinformatics on 2006-04-07 20:25:19 as ***** along with 14 people and 4 groups stevanspringer pansapiens imouthesmp dayjm Einat marcius i41m nirfriedman cmm RowanBarrett ramensky Vaquero Ema bpcusack structural_bioinformatics FAB-lab BioinfoCIPF SGU-CIPF
  • Conservation of electrostatic properties within enzyme families and superfamilies.
    Biochemistry, Vol. 42, No. 12. (1 April 2003), pp. 3464-3473.
    by DR Livesay, P Jambeck, A Rojnuckarin, S Subramaniam
    posted to electrostatics protein_design protein_evolution protein_structure by barry to the group Bioinformatics on 2005-10-09 01:28:18 as read along with 1 person and 1 group Einat structural_bioinformatics
  • Classification and evolution of P-loop GTPases and related ATPases.
    J Mol Biol, Vol. 317, No. 1. (15 March 2002), pp. 41-72.
    by DD Leipe, YI Wolf, EV Koonin, L Aravind
    posted to p-loop protein_evolution protein_sequence protein_structure by barry to the group Bioinformatics on 2005-06-24 23:37:49 as read along with 4 people and 1 group laurabailey Einat tny leemary4 structural_bioinformatics
  • Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.
    Nature, Vol. 399, No. 6734. (27 May 1999), pp. 323-329.
    by KE Nelson, RA Clayton, SR Gill, ML Gwinn, RJ Dodson, DH Haft, EK Hickey, JD Peterson, WC Nelson, KA Ketchum, L McDonald, TR Utterback, JA Malek, KD Linher, MM Garrett, AM Stewart, MD Cotton, MS Pratt, CA Phillips, D Richardson, J Heidelberg, GG Sutton, RD Fleischmann, JA Eisen, O White, SL Salzberg, HO Smith, JC Venter, CM Fraser
    posted to hgt protein_evolution by ana to the group Bioinformatics on 2005-11-19 21:39:08 as read along with 2 people and 1 group jmeppley karfunkel structural_bioinformatics
  • Convergent Evolution of Enzyme Active Sites Is not a Rare Phenomenon
    Journal of Molecular Biology, Vol. 372, No. 3. (21 September 2007), pp. 817-845.
    by Pier F Gherardini, Mark N Wass, Manuela Helmer-Citterich, Michael J Sternberg
    posted to protein_structure protein_evolution convergent_evolution by barry to the group Bioinformatics on 2007-08-31 19:04:36 as * along with 7 people and 1 group tjimenez jjray chad_davis tny shung Minty sim82 structural_bioinformatics
  • Point Mutations in Protein Globular Domains: Contributions from Function, Stability and Misfolding
    Journal of Molecular Biology, Vol. 363, No. 2. (20 October 2006), pp. 422-432.
    by IE Sanchez, J Tejero, C Gomez-Moreno, M Medina, L Serrano
    posted to protein_evolution protein_sequence protein_structure by barry to the group Bioinformatics on 2006-09-29 22:48:42 as ** along with 2 people and 1 group chad_davis cat_worth structural_bioinformatics
  • Protein Differentiation: Emergence of Novel Proteins during Evolution
    Angewandte Chemie International Edition in English, Vol. 20, No. 2. (22 December 2003), pp. 143-151.
    by Georg E Schulz
    posted to protein_evolution protein_structure by ana to the group Bioinformatics on 2005-05-03 03:38:34 as **** along with 1 group structural_bioinformatics
  • Scoring residue conservation.
    Proteins, Vol. 48, No. 2. (1 August 2002), pp. 227-241.
    by WS Valdar
    posted to protein_evolution protein_sequence residue_annotation review by barry to the group Bioinformatics on 2006-05-03 23:58:00 as read along with 7 people and 1 group pansapiens bicko sriram_s cjeans sobolevnrm chad_davis marti structural_bioinformatics
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