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Tag ppi [611 articles]

Articoli recentemente classificati sotto il tag ppi.
  • Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e178.
    by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A Marti-Renom, Baldo Oliva
    posted to ppi motif hubs by winterschlaefer on 2008-05-11 12:17:02 as ** along with 2 people Ema zwang
  • Structure-Templated Predictions of Novel Protein Interactions from Sequence Information
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182.
    by Doron Betel, Kevin E Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W Hogue
    posted to structure prediction ppi by winterschlaefer on 2008-04-24 13:46:44 as ** along with 2 people cjeans zwang
  • Specificity in protein interactions and its relationship with sequence diversity and coevolution.
    Proc Natl Acad Sci U S A (27 April 2007)
    by Luke Hakes, Simon C C Lovell, Stephen G G Oliver, David L L Robertson
    posted to evolution ismb08 ppi by winterschlaefer on 2008-02-17 16:48:12 as ** along with 9 people and 2 groups stevanspringer bjorns cjeans zwang Garamonfok cursonivel1 tale phoenixzxl chrys FAB-lab cursonivel1
  • Still Stratus Not Altocumulus: Further Evidence against the Date/Party Hub Distinction
    PLoS Biology, Vol. 5, No. 6. (1 June 2007), e154.
    by Nizar N Batada, Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Laurence D Hurst, Mike Tyers
    posted to hubs ppi by winterschlaefer on 2008-03-03 10:42:40 as ** along with 2 people antonkratz carlk
  • Confirmation of Organized Modularity in the Yeast Interactome
    PLoS Biology, Vol. 5, No. 6. (1 June 2007), e153.
    by Nicolas Bertin, Nicolas Simonis, Denis Dupuy, Michael E Cusick, Jing-Dong J Han, Hunter B Fraser, Frederick P Roth, Marc Vidal
    posted to hubs ppi by winterschlaefer on 2008-03-03 10:41:41 as ** along with 1 person kintoki
  • Stratus Not Altocumulus: A New View of the Yeast Protein Interaction Network.
    PLoS Biol, Vol. 4, No. 10. (19 September 2006)
    by Nizar N N Batada, Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe J Breitkreutz, Laurence D D Hurst, Mike Tyers
    posted to hubs ppi by winterschlaefer on 2008-03-03 10:40:57 as ** along with 5 people carlk aswin jpoyatos iris_2001 Evangelia
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to hubs ppi by winterschlaefer on 2008-03-03 10:39:28 as ** along with 23 people and 2 groups ksiek kintoki ellakat frohike carlk shikin dragonrez lfriedl balajis yoh j3xucite koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes Evangelia cdeane shung phoenixzxl stefanoallesina GeneGo kdl
  • Unequal evolutionary conservation of human protein interactions in interologous networks
    Genome Biology, Vol. 8 (29 May 2007), R95.
    by Kevin R Brown, Igor Jurisica
    posted to evolution interologs ppi by winterschlaefer on 2007-08-24 11:21:34 as ** along with 2 people and 1 group grahamc zwang ParkinsonLab_at_MaRS
  • A network of protein-protein interactions in yeast.
    Nat Biotechnol, Vol. 18, No. 12. (December 2000), pp. 1257-1261.
    by B Schwikowski, P Uetz, S Fields
    posted to high-throughput ppi yeast by winterschlaefer on 2007-08-27 10:51:26 as ** along with 4 people carlk dragonrez ichbins81 jiny
  • Principles of Protein-Protein Interactions: What are the Preferred Ways For Proteins To Interact?
    Chem. Rev. (21 March 2008)
    by O Keskin, A Gursoy, B Ma, R Nussinov
    posted to ppi by winterschlaefer on 2008-05-09 12:32:53 as ** along with 4 people and 1 group higueruelo GermanErlenkamp allmensch jmrivort Supramolecular
  • Coverage and error models of protein-protein interaction data by directed graph analysis
    Genome Biology, Vol. 8 (10 September 2007), R186.
    by Tony Chiang, Denise Scholtens, Deepayan Sarkar, Robert Gentleman, Wolfgang Huber
    posted to error ppi by winterschlaefer on 2007-09-18 10:33:02 as ** along with 5 people Yanno jfr chad_davis grahamc Pao-Yang
  • Localization of protein-binding sites within families of proteins.
    Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360.
    by D Korkin, FP Davis, A Sali
    posted to scop ppi by wilbur on 2008-05-16 10:19:45 as ** along with 5 people and 4 groups barry tjimenez bicko chad_davis marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Predicting protein--protein interactions from primary structure.
    Bioinformatics, Vol. 17, No. 5. (May 2001), pp. 455-460.
    by JR Bock, DA Gough
    posted to structure ppi by wilbur on 2008-04-28 08:29:54 as ** along with 5 people iris_2001 maryee leelarcombe cjeans Evangelia
  • Development of unified statistical potentials describing protein-protein interactions.
    Biophys J, Vol. 84, No. 3. (March 2003), pp. 1895-1901.
    by H Lu, L Lu, J Skolnick
    posted to usp ppi by wilbur on 2008-04-28 08:28:32 as ** along with 5 people iris_2001 mdimmic chad_davis cjeans selrac
  • ProteomicsProtein complexes take the bait
    Nature, Vol. 415, No. 6868. (10 January 2002), pp. 123-124.
    by Anuj Kumar, Michael Snyder
    posted to ppi by wilbur on 2008-04-21 14:50:59 as read along with 1 person and 1 group lfriedl kdl
  • Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
    Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293.
    by TKB Gandhi, Jun Zhong, Suresh Mathivanan, L Karthick, KN Chandrika, Sujatha S Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S Bader, Akhilesh Pandey
    posted to comparative domain_interaction human ppi by tny on 2006-02-28 07:39:35 as ** along with 10 people and 2 groups cerca carlk balajis indigoviolet spavey cjeans alwinpremanand dejori Pao-Yang pmendes EisenLab FAB-lab
  • Discovering functional interaction patterns in protein-protein interaction networks
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Mehmet Turanalp, Tolga Can
    posted to ppi network mining graph frequent bioinfpdl by Tingting on 2008-06-12 06:38:45 as **** along with 2 people maralena renatomilani
  • Functional centrality: detecting lethality of proteins in protein interaction networks.
    Genome informatics. International Conference on Genome Informatics, Vol. 19 (2007), pp. 166-177.
    by KL Tew, XL Li, SH Tan
    posted to ppi by Takayuki on 2008-06-15 10:15:58 as ***
  • Comparative assessment of large-scale data sets of protein-protein interactions.
    Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403.
    by C von Mering, R Krause, B Snel, M Cornell, SG Oliver, S Fields, P Bork
    posted to ppi systems_biology by shikin on 2008-04-17 12:38:49 as ** along with 19 people and 6 groups carlk camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido raiyar grahamc iris_2001 cmor shu Evangelia Pao-Yang dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
  • Protein interactions: two methods for assessment of the reliability of high throughput observations.
    Mol Cell Proteomics, Vol. 1, No. 5. (May 2002), pp. 349-356.
    by CM Deane, Ł Salwiński, I Xenarios, D Eisenberg
    posted to network ppi systems_biology by shikin on 2008-04-17 14:59:39 as ** along with 10 people and 1 group chasmand ras tmmurali lfriedl bluto henschel ruvido iris_2001 cdeane Pao-Yang kdl
  • How complete are current yeast and human protein-interaction networks?
    Genome Biology, Vol. 7 (01 December 2006), 120.
    by Traver G Hart, Arun K Ramani, Edward M Marcotte
    posted to network ppi systems_biology by shikin on 2008-04-17 14:25:58 as ** along with 3 people and 1 group carlk eukfn Pao-Yang GeneGo
  • A comprehensive two-hybrid analysis to explore the yeast protein interactome.
    Proc Natl Acad Sci U S A, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574.
    by T Ito, T Chiba, R Ozawa, M Yoshida, M Hattori, Y Sakaki
    posted to ppi systems_biology by shikin on 2008-04-17 18:35:59 as ** along with 14 people and 2 groups carlk csanford adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 kengg ruvido gcalda lpfernandes hplatero kdl Bioinformatics
  • Lethality and centrality in protein networks
    Nature, Vol. 411, No. 6833. (3 May 2001), pp. 41-42.
    by H Jeong, SP Mason, AL Barabasi, ZN Oltvai
    posted to chapter ppi by ruvido on 2008-04-08 15:52:41 as ** along with 11 people and 3 groups iris_2001 kuhn cmmorel nickluscombe gurkanbebek jeremymiller timflutre gcalda grahamc lpfernandes Evangelia EBI-regulation GeschwindLab ParkinsonLab_at_MaRS
  • Predicting protein-protein interactions based only on sequences information
    PNAS, Vol. 104, No. 11. (13 March 2007), pp. 4337-4341.
    by Juwen Shen, Jian Zhang, Xiaomin Luo, Weiliang Zhu, Kunqian Yu, Kaixian Chen, Yixue Li, Hualiang Jiang
    posted to chapter ppi by ruvido on 2008-03-20 10:09:38 as ** along with 5 people and 1 group phoenixzxl samjlord Dualsystems cjeans huyun110 moernerlab
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to chapter ppi by ruvido on 2008-03-20 10:05:09 as ** along with 18 people and 2 groups frohike carlk lfriedl balajis opheliav yuval wnpx nickluscombe raiyar massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung phoenixzxl penpen926 kdl EBI-regulation
  • Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome.
    Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1146-1154.
    by L Lu, AK Arakaki, H Lu, J Skolnick
    posted to chapter ppi by ruvido on 2008-04-04 17:05:33 as ** along with 4 people and 1 group mdimmic lfriedl chad_davis cjeans kdl
  • MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading.
    Proteins, Vol. 49, No. 3. (15 November 2002), pp. 350-364.
    by L Lu, H Lu, J Skolnick
    posted to chapter ppi by ruvido on 2008-04-04 17:05:03 as ** along with 5 people and 5 groups ana bicko chad_davis marcius sangeetha structural_bioinformatics Bioinformatics insilicodrug BioinfoCIPF SGU-CIPF
  • The relationship between sequence and interaction divergence in proteins.
    J Mol Biol, Vol. 332, No. 5. (3 October 2003), pp. 989-998.
    by P Aloy, H Ceulemans, A Stark, RB Russell
    posted to chapter ppi by ruvido on 2008-04-04 17:01:20 as ** along with 5 people karbak bicko chad_davis drastic RebeccaHamer
  • InterPreTS: protein interaction prediction through tertiary structure.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 161-162.
    by P Aloy, RB Russell
    posted to chapter ppi by ruvido on 2008-04-04 16:58:26 as ** along with 5 people baaden bicko chad_davis henschel Pao-Yang
  • Prediction of physical protein–protein interactions
    Physical Biology, Vol. 2, No. 2. (June 2005), S1.
    by András Szilágyi, Vera Grimm, Adrián K Arakaki, Jeffrey Skolnick
    posted to chapter ppi prediction by ruvido on 2008-03-19 10:25:46 as ** along with 1 person and 1 group lfriedl kdl
  • Computational redesign of protein-protein interaction specificity.
    Nat Struct Mol Biol, Vol. 11, No. 4. (April 2004), pp. 371-379.
    by T Kortemme, LA Joachimiak, AN Bullock, AD Schuler, BL Stoddard, D Baker
    posted to chapter ppi by ruvido on 2008-04-04 16:48:51 as ** along with 5 people lna jwm bicko cjeans tale
  • Comparative protein structure modeling of genes and genomes.
    Annu Rev Biophys Biomol Struct, Vol. 29 (2000), pp. 291-325.
    by MA Marti-Renom, AC Stuart, A Fiser, R Sanchez, F Melo, A Sali
    posted to chapter ppi by ruvido on 2008-04-04 16:47:47 as ** along with 11 people and 2 groups chad_davis IrinaMoreira min013 aalibes nigham ttjoseph marcius ffranca duartemolha dgront insectopalo BioinfoCIPF SGU-CIPF
  • A structural perspective on protein-protein interactions.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 313-324.
    by RB Russell, F Alber, P Aloy, FP Davis, D Korkin, M Pichaud, M Topf, A Sali
    posted to chapter ppi review by ruvido on 2008-03-26 17:25:09 as ** along with 11 people and 1 group higueruelo baaden bicko anita chad_davis dgront sriram_s cjeans Evangelia Pao-Yang marti structure-bii
  • Crystal Structure of Thermus aquaticus Core RNA Polymerase at 3.3 A Resolution
    Cell, Vol. 98, No. 6. (17 September 1999), pp. 811-824.
    by Gongyi Zhang, Elizabeth A Campbell, Leonid Minakhin, Catherine Richter, Konstantin Severinov, Seth A Darst
    posted to chapter ppi xray by ruvido on 2008-04-09 18:05:15 as **
  • The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.
    Science, Vol. 289, No. 5481. (11 August 2000), pp. 905-920.
    by N Ban, P Nissen, J Hansen, PB Moore, TA Steitz
    posted to chapter ppi xray by ruvido on 2008-04-09 18:03:20 as ** along with 2 people P2324548 eckart_bindewald
  • Identification of protein-protein interfaces by decreased amide proton solvent accessibility.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 25. (8 December 1998), pp. 14705-14710.
    by JG Mandell, AM Falick, EA Komives
    posted to chapter nmr ppi by ruvido on 2008-04-09 18:00:44 as **
  • Interaction networks for systems biology.
    FEBS Lett (15 February 2008)
    by Samuel Bader, Sebastian Kühner, Anne-Claude C Gavin
    posted to ppi by ruvido on 2008-02-25 16:58:12 as ** along with 3 people adacier chad_davis zwang
  • Filtering and selection of structural models: combining docking and NMR.
    Proteins, Vol. 53, No. 1. (1 October 2003), pp. 18-32.
    by A Dobrodumov, AM Gronenborn
    posted to chapter docking nmr ppi by ruvido on 2008-04-09 17:57:44 as **
  • A combined algorithm for genome-wide prediction of protein function.
    Nature, Vol. 402, No. 6757. (4 November 1999), pp. 83-86.
    by EM Marcotte, M Pellegrini, MJ Thompson, TO Yeates, D Eisenberg
    posted to chapter ppi by ruvido on 2008-03-19 10:06:18 as ** along with 4 people and 1 group carlk shivaram lfriedl cjeans kdl
  • Detecting Protein Function and Protein-Protein Interactions from Genome Sequences
    Science, Vol. 285, No. 5428. (30 July 1999), pp. 751-753.
    by Edward M Marcotte, Matteo Pellegrini, Ho-Leung Ng, Danny W Rice, Todd O Yeates, David Eisenberg
    posted to chapter ppi by ruvido on 2008-03-19 10:05:52 as ** along with 6 people and 1 group lfriedl balajis opheliav gurkanbebek cjeans Evangelia kdl
  • Identification of the protein kinase A regulatory RIalpha-catalytic subunit interface by amide H/2H exchange and protein docking.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 23. (11 November 2003), pp. 13264-13269.
    by GS Anand, D Law, JG Mandell, AN Snead, I Tsigelny, SS Taylor, LF Ten Eyck, EA Komives
    posted to chapter docking nmr ppi by ruvido on 2008-04-09 17:55:03 as **
  • Structural systems biology: modelling protein interactions
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 3., pp. 188-197.
    by Patrick Aloy, Robert B Russell
    posted to chapter network ppi protein-interactions review system-biology by ruvido on 2006-12-29 12:08:39 as ** along with 18 people and 3 groups higueruelo chad_davis ana aalibes bicko xico dgront drastic choonpeng henschel massivemayhem cat_worth fishtank iris_2001 gvuister lpfernandes Evangelia andreas_foersch structural_bioinformatics Bioinformatics WetBiology
  • KEGG: kyoto encyclopedia of genes and genomes.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 27-30.
    by M Kanehisa, S Goto
    posted to chapter database ppi by ruvido on 2008-04-10 15:32:02 as ** along with 10 people natstreet grottenolm Evangelia dquest j3xucite fisherp koerner noby naegele katerinakal
  • Ten thousand interactions for the molecular biologist
    Nat Biotech, Vol. 22, No. 10. (October 2004), pp. 1317-1321.
    by Patrick Aloy, Robert B Russell
    posted to chapter homology ppi by ruvido on 2008-04-09 17:31:01 as ** along with 9 people and 2 groups higueruelo baaden jwm bicko chad_davis dullhunk dgront drastic Evangelia Radiation_Damage Stressosome
  • BIND--The Biomolecular Interaction Network Database.
    Nucleic Acids Res, Vol. 29, No. 1. (1 January 2001), pp. 242-245.
    by GD Bader, I Donaldson, C Wolting, BF Ouellette, T Pawson, CW Hogue
    posted to chapter database ppi by ruvido on 2008-04-10 15:30:32 as ** along with 3 people carlk wnpx blackbart
  • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    Nature, Vol. 403, No. 6770. (10 February 2000), pp. 623-627.
    by Peter Uetz, Loic Giot, Gerard Cagney, Traci A Mansfield, Richard S Judson, James R Knight, Daniel Lockshon, Vaibhav Narayan, Maithreyan Srinivasan, Pascale Pochart, Alia Qureshi-Emili, Ying Li, Brian Godwin, Diana Conover, Theodore Kalbfleisch, Govindan Vijayadamodar, Meijia Yang, Mark Johnston, Stanley Fields, Jonathan M Rothberg
    posted to chapter ppi by ruvido on 2008-04-07 17:28:41 as ** along with 14 people and 1 group carlk csanford dragonrez bicko shivaram lfriedl chad_davis j3xucite dyermd timflutre gcalda grahamc laughcry hplatero kdl
  • Potential artefacts in protein-interaction networks.
    FEBS Lett, Vol. 530, No. 1-3. (23 October 2002), pp. 253-254.
    by P Aloy, RB Russell
    posted to chapter ppi by ruvido on 2008-04-07 17:23:28 as ** along with 3 people chad_davis wnpx gurkanbebek
  • From words to literature in structural proteomics.
    Nature, Vol. 422, No. 6928. (13 March 2003), pp. 216-225.
    by A Sali, R Glaeser, T Earnest, W Baumeister
    posted to chapter ppi review by ruvido on 2008-04-10 15:12:55 as ** along with 5 people higueruelo bicko chad_davis dgront lpfernandes
  • Protein interaction maps for complete genomes based on gene fusion events.
    Nature, Vol. 402, No. 6757. (4 November 1999), pp. 86-90.
    by AJ Enright, I Iliopoulos, NC Kyrpides, CA Ouzounis
    posted to chapter gene_fusion ppi by ruvido on 2008-03-26 16:08:46 as ** along with 3 people carlk balajis selrac
  • Solvation energy in protein folding and binding.
    Nature, Vol. 319, No. 6050. (2 1986), pp. 199-203.
    by D Eisenberg, AD McLachlan
    posted to chapter ppi solvation by ruvido on 2008-04-07 16:42:52 as ** along with 1 person ashaytan
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