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Tag pathways [236 articles]

Articoli recentemente classificati sotto il tag pathways.
  • From genomics to chemical genomics: new developments in KEGG.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by M Kanehisa, S Goto, M Hattori, KF Aoki-Kinoshita, M Itoh, S Kawashima, T Katayama, M Araki, M Hirakawa
    posted to pathways by yggdrasil on 2008-04-21 11:04:28 as ** along with 13 people jyuh aalibes kuhn balajis alexg eweaver tny dullhunk michC frohike incovoma sgoetz natstreet
  • Reactome: a knowledgebase of biological pathways.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by G Joshi-Tope, M Gillespie, I Vastrik, P D'Eustachio, E Schmidt, B de Bono, B Jassal, GR Gopinath, GR Wu, L Matthews, S Lewis, E Birney, L Stein
    posted to pathways by yggdrasil on 2008-04-21 11:15:19 as ** along with 8 people and 1 group aalibes kuhn yas dullhunk duartemolha massivemayhem cerami jyuh T_lab
  • The PANTHER database of protein families, subfamilies, functions and pathways.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by H Mi, B Lazareva-Ulitsky, R Loo, A Kejariwal, J Vandergriff, S Rabkin, N Guo, A Muruganujan, O Doremieux, MJ Campbell, H Kitano, PD Thomas
    posted to database domain family pathways protein subfamily by xico on 2005-12-24 16:17:33 as *** along with 3 people and 2 groups Cortel yas AlexanderPico T_lab WetBiology
  • Analysis of Signalling Pathways Using Continuous Time Markov Chains
    Transactions on Computational Systems Biology VI (2006), pp. 44-67.
    by Muffy Calder, Vladislav Vyshemirsky, David Gilbert, Richard Orton
    posted to chains checking continuous logic markov model pathways processes signalling stochastic time by ullahmukhtar on 2007-08-06 14:02:02 as ***
  • Mechanotransduction in endothelial cell migration.
    J Cell Biochem, Vol. 96, No. 6. (15 December 2005), pp. 1110-1126.
    by S Li, NF Huang, S Hsu
    posted to endothelial mechanical mechanoresponse migration molecular pathways shear by tsjipko on 2006-08-16 13:20:45 as read
  • Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes
    Brief Bioinform, Vol. 9, No. 1. (1 January 2008), pp. 34-45.
    by Matteo Brilli, Renato Fani, Pietro Lio
    posted to bioinfpdl metabolic pathways by Tingting on 2008-05-15 06:53:32 as ** along with 2 people lylu renatomilani
  • Comparing classical pathways and modern networks: towards the development of an edge ontology
    Trends in Biochemical Sciences, Vol. In Press, Corrected Proof
    by Long J Lu, Andrea Sboner, Yuanpeng J Huang, Hao X Lu, Tara A Gianoulis, Kevin Y Yip, Philip M Kim, Gaetano T Montelione, Mark B Gerstein
    posted to pathwaydatabase pathways by thomaskelder on 2008-04-18 13:36:21 as ** along with 3 people kuhn andrawaagmeester lenov
  • Multi-layered Representation for Cell Signaling Pathways
    Mol Cell Proteomics, Vol. 3, No. 10. (1 October 2004), pp. 1009-1022.
    by Eunok Paek, Jisook Park, Kong-Joo Lee
    posted to pathways by thomaskelder on 2008-05-26 13:41:50 as **
  • SPIKE - a database, visualization and analysis tool of cellular signaling pathways
    BMC Bioinformatics, Vol. 9 (20 February 2008), 110.
    by Ran Elkon, Rita Vesterman, Nira Amit, Igor Ulitsky, Idan Zohar, Mali Weisz, Gilad Mass, Nir Orlev, Giora Sternberg, Ran Blekhman, Jackie Assa, Yosef Shiloh, Ron Shamir
    posted to pathwayanalysis pathways by thomaskelder on 2008-02-26 10:21:29 as ***** along with 4 people jyuh renatomilani maralena AlexanderPico
  • Reconstructing Signal Transduction Pathways: Challenges and Opportunities
    Annals of the New York Academy of Sciences, Vol. 1115, No. 1. (December 2007), pp. 32-50.
    by Arnold J Levine, Wenwei Hu, Zhaohui Feng, German Gil
    posted to pathwayreconstruction pathways by thomaskelder on 2008-05-04 10:33:06 as ***** along with 1 person jyuh
  • Towards zoomable multidimensional maps of the cell
    Nature Biotechnology, Vol. 25, No. 5. (04 May 2007), pp. 547-554.
    by Zhenjun Hu, Joe Mellor, Jie Wu, Minoru Kanehisa, Joshua M Stuart, Charles Delisi
    posted to pathways by thomaskelder on 2008-05-28 19:47:49 as *** along with 10 people tmmurali kuhn cmmorel yas balajis dullhunk jyuh AlexanderPico carlk Borelli
  • Event ontology: a pathway-centric ontology for biological processes.
    Pac Symp Biocomput (2006), pp. 152-163.
    by T Kushida, T Takagi, KI Fukuda
    posted to pathwayontology pathways by thomaskelder on 2008-05-06 12:31:12 as ** along with 2 people and 4 groups yas jago T_lab e-maintenance Global_health_enterprise_architecture OER_Open_Educational_Resources
  • From Pathways Databases to Network Models of Switching Behavior
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e152.
    by Baltazar D Aguda, Andrew B Goryachev
    posted to pathwaydatabases pathways by thomaskelder on 2008-05-19 10:10:38 as ** along with 5 people and 1 group balicea cjeans GustavoLacerda sobolevnrm tharris baker-group
  • Gene-set approach for expression pattern analysis
    Brief Bioinform (17 January 2008), bbn001.
    by Dougu Nam, Seon-Young Kim
    posted to pathwayanalysis pathways pathwaystatistics by thomaskelder on 2008-03-04 10:44:16 as ** along with 9 people seemu lp2 giovenko AlexanderPico heliopais tmmurali yas beete klo
  • A Global Pathway Crosstalk Network
    Bioinformatics (23 April 2008), btn200.
    by Yong Li, Pankaj Agarwal, Dilip Rajagopalan
    posted to networkanalysis pathwayanalysis pathways by thomaskelder on 2008-04-27 12:01:21 as *** along with 6 people maralena bootsy renatomilani AlexanderPico jyuh balicea
  • The public road to high-quality curated biological pathways.
    Drug discovery today (21 July 2008)
    by Michiel E E Adriaens, Magali Jaillard, Andra Waagmeester, Susan L M L Coort, Alex R R Pico, Chris T A T Evelo
    posted to pathwayanalysis pathways by thomaskelder on 2008-07-28 07:17:43 as ** along with 2 people AlexanderPico jyuh
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
    by T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, R Bumgarner, DR Goodlett, R Aebersold, L Hood
    posted to pathwayanalysis pathways systemsbiology by thomaskelder on 2008-05-13 09:58:29 as ** along with 10 people and 3 groups snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek raiyar shikin Bioinformatics steinmetzlab GeneGo
  • Pathway databases.
    Ann N Y Acad Sci, Vol. 1020 (May 2004), pp. 77-91.
    by CF Schaefer
    posted to pathwaydatabases pathways by thomaskelder on 2008-05-07 12:23:35 as ***** along with 3 people and 1 group greg cantupaz AlexanderPico spliceml
  • Pathway mapping tools for analysis of high content data.
    Methods in molecular biology (Clifton, N.J.), Vol. 356 (2007), pp. 319-350.
    by S Ekins, Y Nikolsky, A Bugrim, E Kirillov, T Nikolskaya
    posted to pathwayanalysis pathways pathwaytools by thomaskelder on 2008-05-04 10:38:02 as ***** along with 2 people and 1 group shikin AlexanderPico GeneGo
  • Pathway information for systems biology.
    FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1815-1820.
    by MP Cary, GD Bader, C Sander
    posted to pathways by thomaskelder on 2008-05-08 09:15:40 as ** along with 2 people blackbart AlexanderPico
  • PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by H Mi, N Guo, A Kejariwal, PD Thomas
    posted to pathwaydatabase pathways by thomaskelder on 2008-05-28 12:10:11 as ** along with 4 people siebertm bootsy skumagai jyuh
  • WikiPathways: Pathway Editing for the People
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e184.
    by Alexander R Pico, Thomas Kelder, Martijn P van Iersel, Kristina Hanspers, Bruce R Conklin, Chris Evelo
    posted to community database pathways social wiki by tharris on 2008-08-02 14:30:51 as ** along with 10 people and 2 groups cerami AlexanderPico thomaskelder iBartomeus renatomilani ajaymalik jarredmccaffrey laurianw dullhunk amarois ConklinLab behavior_flexibility
  • Getting started in biological pathway construction and analysis.
    PLoS computational biology, Vol. 4, No. 2. (February 2008)
    by GA Viswanathan, J Seto, S Patil, G Nudelman, SC Sealfon
    posted to bioinformatics pathways by tharris on 2008-06-02 20:09:43 as ** along with 2 people jfr dullhunk
  • A voice region in the monkey brain
    Nature Neuroscience, Vol. 11, No. 3. (10 February 2008), pp. 367-374.
    by Christopher I Petkov, Christoph Kayser, Thomas Steudel, Kevin Whittingstall, Mark Augath, Nikos K Logothetis
    posted to auditory cortex pathways primate vocal vocalizations by tbloomf on 2008-07-31 20:29:37 as ** along with 1 person sen_cheng
  • The Neural Control of Vocalization in Mammals: A Review
    Journal of Voice, Vol. In Press, Corrected Proof
    by U Jürgens
    posted to acc auditory control cortex laryngeal learning mammals motor pathways vocal by tbloomf on 2008-07-31 20:23:44 as **
  • Species-specific calls activate homologs of Broca's and Wernicke's areas in the macaque
    Nature Neuroscience, Vol. 9, No. 8. (23 July 2006), pp. 1064-1070.
    by Ricardo Gil-Da-Costa, Alex Martin, Marco A Lopes, Monica Muñoz, Jonathan B Fritz, Allen R Braun
    posted to pathways primates recognition vocal by tbloomf on 2008-07-31 22:40:11 as **
  • Microcircuitry of the direct and indirect pathways of the basal ganglia
    Neuroscience, Vol. 86, No. 2. (September 1998), pp. 353-387.
    by Y Smith, MD Bevan, E Shink, JP Bolam
    posted to basalganglia pathways by stain on 2006-06-06 02:22:01 as ** along with 1 person awooga
  • Evolutionarily Conserved Pathways of Energetic Connectivity in Protein Families
    Science, Vol. 286, No. 5438. (08 October 1999), pp. 295-299.
    by Steve W Lockless, Rama Ranganathan
    posted to conserved interactions long-range pathways by sriram_s on 2006-03-24 23:11:33 as *** along with 15 people and 5 groups stevanspringer Einat marcius eckart_bindewald analogAI dgront caporaso choonpeng Haggan rabio mottonen zambujo mingzhi bethbromley ca3295 structural_bioinformatics FAB-lab biomedical-nlp BioinfoCIPF SGU-CIPF
  • Pathways to the analysis of microarray data
    Trends in Biotechnology, Vol. 23, No. 8. (August 2005), pp. 429-435.
    by Keira R Curtis, Matej Oresic, Antonio Vidal-Puig
    posted to networks pathways by snuppepuppan on 2005-08-01 09:18:01 as **** along with 5 people and 1 group textoris Ayest tardigrade ealloza heliopais BioinfoCIPF
  • Validation and refinement of gene-regulatory pathways on a network of physical interactions.
    Genome Biol, Vol. 6, No. 7. (2005)
    by CH Yeang, HC Mak, S McCuine, C Workman, T Jaakkola, T Ideker
    posted to networks pathways by snuppepuppan on 2005-07-19 09:24:49 as **** along with 11 people and 1 group abhik tmmurali textoris wnpx noano koller ccr cdppublications AlexanderPico carlk jago CDP
  • Reconstruction of cellular signalling networks and analysis of their properties
    Nature Reviews Molecular Cell Biology, Vol. 6, No. 2. (01 February 2005), pp. 99-111.
    by Jason A Papin, Tony Hunter, Bernhard O Palsson, Shankar Subramaniam
    posted to networks pathways by snuppepuppan on 2005-07-19 08:57:43 as ** along with 8 people and 5 groups camster rklancer textoris rhem1224 rubendrr iris_2001 arne maralena dbk-lab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS
  • Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'
    Nature Genetics, Vol. 37, No. 3. (13 February 2005), pp. 225-232.
    by Leonid Bystrykh, Ellen Weersing, Bert Dontje, Sue Sutton, Mathew T Pletcher, Tim Wiltshire, Andrew I Su, Edo Vellenga, Jintao Wang, Kenneth F Manly, Lu Lu, Elissa J Chesler, Rudi Alberts, Ritsert C Jansen, Robert W Williams, Michael P Cooke, Gerald d de Haan
    posted to human pathways by snuppepuppan on 2005-03-23 11:54:14 as ** along with 4 people kentsis fisherp caseybrown hplatero
  • Phenotype characterisation using integrated gene transcript, protein and metabolite profiling.
    Appl Bioinformatics, Vol. 3, No. 4. (2004), pp. 205-217.
    by M Oresic, CB Clish, EJ Davidov, E Verheij, J Vogels, LM Havekes, E Neumann, A Adourian, S Naylor, J van der Greef, T Plasterer
    posted to networks pathways by snuppepuppan on 2005-09-13 13:51:31 as **
  • Pathway analysis of coronary atherosclerosis.
    Physiol Genomics (7 June 2005)
    by Jennifer Y Y King, Rossella Ferrara, Raymond Tabibiazar, Joshua M M Spin, Mary M M Chen, Allan Kuchinsky, Aditya Vailaya, Robert Kincaid, Anya Tsalenko, David Xing-Fei X Deng, Andrew Connolly, Peng Zhang, Eugene Yang, Clifton Watt, Zohar Yakhini, Amir Ben-Dor, Annette Adler, Laurakay Bruhn, Philip Tsao, Thomas Quertermous, Euan A A Ashley
    posted to atherosclerosis networks pathways by snuppepuppan on 2005-07-19 09:21:02 as *****
  • The evolution of signalling pathways in animal development
    Nat Rev Genet, Vol. 4, No. 1. (January 2003), pp. 39-49.
    by Andre Pires-Dasilva, Ralf J Sommer
    posted to devo evo pathways review signalling by signalduplication on 2007-11-02 17:23:23 as **
  • Pathogen recognition and signalling in the Drosophila innate immune response
    Immunobiology, Vol. 211, No. 4. (2 June 2006), pp. 251-261.
    by Lihui Wang, Petros Ligoxygakis
    posted to drosophila innate_immunity pathways review by shuzhens on 2008-08-27 16:09:23 as **
  • Rudra Interrupts Receptor Signaling Complexes to Negatively Regulate the IMD Pathway
    PLoS Pathog, Vol. 4, No. 8. (2008), e1000120.
    by Kamna Aggarwal, Florentina Rus, Christie Vriesema-Magnuson, Deniz Ertürk-Hasdemir, Nicholas Paquette, Neal Silverman
    posted to toll pathways innate_immunity imd drosophila by shuzhens on 2008-09-02 21:25:34 as **
  • From A to B in free energy space
    The Journal of Chemical Physics, Vol. 126, No. 5. (2007)
    by Davide Branduardi, Francesco L Gervasio, Michele Parrinello
    posted to pathways free-energy alaninedipeptide by ruvido on 2007-02-08 13:04:33 as ** along with 2 people kdesmond Diego_Prada
  • A search engine to identify pathway genes from expression data on multiple organisms
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Chunnuan Chen, Matthew Weirauch, Corey Powell, Alexander Zambon, Joshua Stuart
    posted to expression pathways search by rsandie on 2007-05-07 16:20:55 as ** along with 5 people jyuh tmmurali jfr waszak AlexanderPico
  • Biosynthesis of Selenocysteine on Its tRNA in Eukaryotes
    PLoS Biology, Vol. 5, No. 1. (1 January 2007), e4.
    by Xue-Ming Xu, Bradley A Carlson, Heiko Mix, Yan Zhang, Kazima Saira, Richard S Glass, Marla J Berry, Vadim N Gladyshev, Dolph L Hatfield
    posted to eukaryote pathways rareaa trna selenocysteine by rsandie on 2007-12-11 20:08:02 as ***
  • Structural and functional investigation of a putative archaeal selenocysteine synthase.
    Biochemistry, Vol. 44, No. 40. (11 October 2005), pp. 13315-13327.
    by JT Kaiser, K Gromadski, M Rother, H Engelhardt, MV Rodnina, MC Wahl
    posted to amino-acids archaea pathways rareaa structure selenocysteine by rsandie on 2007-12-11 20:10:30 as **
  • Parallel processing in the mammalian retina.
    Nat Rev Neurosci, Vol. 5, No. 10. (October 2004), pp. 747-757.
    by H Wässle
    posted to pathways retina by rknight15 on 2007-12-31 14:43:11 as ** along with 2 people sylvain_chevallier marcbernot
  • The koniocellular pathway in primate vision.
    Annu Rev Neurosci, Vol. 23 (2000), pp. 127-153.
    by SH Hendry, RC Reid
    posted to pathways s-cone by rknight15 on 2007-12-31 14:41:50 as ** along with 3 people and 1 group sylvain_chevallier alexstorer marcbernot eslab
  • The prediction of hillslope flow paths for distributed hydrological modelling using digital terrain models
    Hydrological Processes, Vol. 5, No. 1. (1991), pp. 59-79.
    by P Quinn, K Beven, P Chevallier, O Planchon
    posted to data digital distributed flow hydrological models pathways terrain by ricckli on 2008-07-27 18:32:25 as **
  • iPath: interactive exploration of biochemical pathways and networks.
    Trends in biochemical sciences, Vol. 33, No. 3. (March 2008), pp. 101-103.
    by I Letunic, T Yamada, M Kanehisa, P Bork
    posted to metabolic pathways visualization by reyez on 2008-07-16 09:34:53 as ** along with 3 people dullhunk jyuh srp33
  • Sensors and signals: a coactivator/corepressor/epigenetic code for integrating signal-dependent programs of transcriptional response
    Genes Dev., Vol. 20, No. 11. (1 June 2006), pp. 1405-1428.
    by Michael G Rosenfeld, Victoria V Lunyak, Christopher K Glass
    posted to complexes pathways by reidy on 2006-08-31 16:58:18 as **
  • Three habits of highly effective signaling pathways: principles of transcriptional control by developmental cell signaling.
    Genes Dev, Vol. 16, No. 10. (15 May 2002), pp. 1167-1181.
    by S Barolo, JW Posakony
    posted to pathways signaling by reidy on 2006-08-31 17:00:07 as **
  • Pathway evolution, structurally speaking
    Current Opinion in Structural Biology, Vol. 12, No. 3. (1 June 2002), pp. 374-382.
    by Stuart C Rison, Janet M Thornton
    posted to evolution pathways by rabu on 2006-06-02 20:43:53 as ** along with 4 people tny thomaskelder andrawaagmeester AlexanderPico
  • Proteomic and transcriptional characterization of aromatic degradation pathways in Rhodoccocus sp. strain TFB.
    Proteomics (16 March 2006)
    by Laura Tomás-Gallardo, Inés Canosa, Eduardo Santero, Emilio Camafeita, Enrique Calvo, Juan A A López, Belén Floriano
    posted to pathways by rabu on 2006-04-12 21:10:03 as ** along with 1 group TNT
  • Group additive regression models for genomic data analysis.
    Biostatistics (18 May 2007)
    by Yihui Luan, Hongzhe Li
    posted to boosting geneset pathways by ptrobajo on 2008-03-30 23:46:06 as ** along with 1 person jfr
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