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Tag massspec [30 articles]

Articoli recentemente classificati sotto il tag massspec.
  • Modeling HER2 Effects on Cell Behavior from Mass Spectrometry Phosphotyrosine Data.
    PLoS Comput Biol, Vol. 3, No. 1. (5 January 2007)
    by Neil Kumar, Alejandro Wolf-Yadlin, Forest M M White, Douglas A A Lauffenburger
    posted to erbb2 massspec migration by pjasper on 2007-05-08 18:12:38 as ** along with 2 people jfr cdpwebadmin
  • Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
    BMC Bioinformatics, Vol. 9 (15 April 2008), 197.
    by Yoginder S Dandass, Shane C Burgess, Mark Lawrence, Susan M Bridges
    posted to fpga massspec by nitiniitk on 2008-04-17 07:09:16 as *
  • Phosphotyrosine interactome of the ErbB-receptor kinase family
    Molecular Systems Biology, Vol. 1, No. 1. (25 May 2005), pp. msb4100012-E1-msb4100012-E13.
    by Waltraud X Schulze, Lei Deng, Matthias Mann
    posted to egfr erbb massspec proteomic by klu on 2007-09-14 18:58:58 as ** along with 2 people and 2 groups jfr rhem1224 TCR_Signaling SysbioMPI-TCells
  • A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data
    BMC Bioinformatics, Vol. 8 (20 April 2007), 133.
    by Hua Xu, Michael A Freitas
    posted to identification massspec proteomics by groepl on 2007-12-20 20:28:30 as ** along with 1 person jyuh
  • Wavelets in bioinformatics and computational biology: state of art and perspectives
    Bioinformatics, Vol. 19, No. 1. (1 January 2003), pp. 2-9.
    by Pietro Lio
    posted to massspec wavelet by groepl on 2007-10-10 13:20:18 as ***
  • Proteomic analysis of phosphorylation, oxidation and nitrosylation in signal transduction.
    Biochim Biophys Acta, Vol. 1764, No. 12. (December 2006), pp. 1823-1841.
    by CM Spickett, AR Pitt, N Morrice, W Kolch
    posted to massspec proteomics by groepl on 2007-09-17 18:11:40 as **** along with 1 person jyuh
  • msmsEval: Tandem mass spectral quality assignment for high-throughput proteomics
    BMC Bioinformatics, Vol. 8 (09 February 2007), 51.
    by Jason WH Wong, Matthew J Sullivan, Hugh M Cartwright, Gerard Cagney
    posted to identification massspec proteomics by groepl on 2007-12-20 20:45:56 as **
  • MathDAMP: a package for differential analysis of metabolite profiles
    BMC Bioinformatics, Vol. 7 (13 December 2006), 530.
    by Richard Baran, Hayataro Kochi, Natsumi Saito, Makoto Suematsu, Tomoyoshi Soga, Takaaki Nishioka, Martin Robert, Masaru Tomita
    posted to massspec metabolomics by groepl on 2007-12-20 21:28:31 as **
  • Annotation of LC/ESI-MS Mass Signals
    Bioinformatics Research and Development (2007), pp. 371-380.
    by Ralf Tautenhahn, Christoph Böttcher, Steffen Neumann
    posted to massspec metabolomics by groepl on 2008-03-10 17:53:25 as ****
  • MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data
    BMC Bioinformatics, Vol. 8 (13 June 2007), 197.
    by Juergen Hartler, Gerhard G Thallinger, Gernot Stocker, Alexander Sturn, Thomas R Burkard, Erik Korner, Robert Rader, Andreas Schmidt, Karl Mechtler, Zlatko Trajanoski
    posted to massspec proteomics by groepl on 2007-11-02 15:21:57 as *** along with 3 people brianb Thomasah jyuh
  • Quantitative quality-assessment techniques to compare fractionation and depletion methods in SELDI-TOF mass spectrometry experiments.
    Bioinformatics (11 July 2007)
    by Jaroslaw Harezlak, Mike Wang, David Christiani, Xihong Lin
    posted to massspec proteomics statistics by groepl on 2007-12-20 19:58:28 as ** along with 1 person jyuh
  • Normalization method for metabolomics data using optimal selection of multiple internal standards
    BMC Bioinformatics, Vol. 8 (15 March 2007), 93.
    by Marko Sysi-Aho, Mikko Katajamaa, Laxman Yetukuri, Matej Oresic
    posted to massspec proteomics by groepl on 2007-12-20 20:40:36 as ** along with 1 person BIBLIOma
  • SAMPI: Protein identification with Mass Spectra Alignments
    BMC Bioinformatics, Vol. 8 (26 March 2007), 102.
    by Hans-Michael Kaltenbach, Andreas Wilke, Sebastian Boecker
    posted to identification massspec proteomics by groepl on 2007-12-20 19:52:24 as ** along with 1 person BIBLIOma
  • Computational prediction of proteotypic peptides for quantitative proteomics
    Nature Biotechnology, Vol. 25, No. 1. (31 December 2006), pp. 125-131.
    by Parag Mallick, Markus Schirle, Sharon S Chen, Mark R Flory, Hookeun Lee, Daniel Martin, Jeffrey Ranish, Brian Raught, Robert Schmitt, Thilo Werner, Bernhard Kuster, Ruedi Aebersold
    posted to massspec proteomics by groepl on 2007-09-18 12:14:28 as *** along with 2 people jyuh nedwards
  • Feature Extraction for Mass Spectrometry Data
    Life System Modeling and Simulation (2007), pp. 188-196.
    by Yihui Liu
    posted to massspec proteomics by groepl on 2007-09-21 10:30:16 as ***
  • ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites
    BMC Bioinformatics, Vol. 8 (23 June 2007), 216.
    by Jan Hummel, Michaela Niemann, Stefanie Wienkoop, Waltraud Schulze, Dirk Steinhaeuser, Joachim Selbig, Dirk Walther, Wolfram Weckwerth
    posted to massspec proteomics by groepl on 2007-10-02 00:27:33 as **** along with 2 people jyuh dullhunk
  • AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction
    BMC Bioinformatics, Vol. 8 (18 January 2007), 15.
    by Ayumu Saito, Masao Nagasaki, Masaaki Oyama, Hiroko Kozuka-Hata, Kentaro Semba, Sumio Sugano, Tadashi Yamamoto, Satoru Miyano
    posted to massspec proteomics by groepl on 2007-12-20 21:18:38 as ** along with 1 person jyuh
  • OpenMS - An open-source software framework for mass spectrometry
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Marc Sturm, Andreas Bertsch, Clemens Groepl, Andreas Hildebrandt, Rene Hussong, Eva Lange, Nico Pfeifer, Ole S Trieglaff, Alexandra Zerck, Knut Reinert, Oliver Kohlbacher
    posted to proteomics massspec lc-ms-ms by groepl on 2008-06-30 23:55:15 as ***** along with 4 people brianb olberd jyuh neils
  • Introduction to Computational Proteomics
    PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e114.
    by Jacques Colinge, Keiryn L Bennett
    posted to massspec proteomics by groepl on 2007-09-18 12:13:23 as read along with 5 people and 1 group jyuh chad_davis anwazo zwang cabbagezs Bioinformatics
  • Peer Group Vector Median Filter
    Pattern Recognition (2007), pp. 314-323.
    by Bogdan Smolka
    posted to massspec signalproc statistics by groepl on 2007-10-12 15:34:19 as **
  • Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Witold Wolski, Maciej Lalowski, Peter Martus, Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert
    posted to massspec proteomics by groepl on 2007-10-02 00:13:18 as ****
  • A common open representation of mass spectrometry data and its application to proteomics research
    Nature Biotechnology, Vol. 22, No. 11. (04 November 2004), 1459.
    by Patrick GA Pedrioli, Jimmy K Eng, Robert Hubley, Mathijs Vogelzang, Eric W Deutsch, Brian Raught, Brian Pratt, Erik Nilsson, Ruth H Angeletti, Rolf Apweiler, Kei Cheung, Catherine E Costello, Henning Hermjakob, Sequin Huang, Randall K Julian, Eugene Kapp, Mark E Mccomb, Stephen G Oliver, Gilbert Omenn, Norman W Paton, Richard Simpson, Richard Smith, Chris F Taylor, Weimin Zhu, Ruedi Aebersold
    posted to massspec by Gehrke on 2007-03-28 13:50:52 as ** along with 6 people and 1 group alanrw irenas lwilliams andytseng agileproteomics nedwards dbk-lab
  • Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization.
    Clin Chem, Vol. 49, No. 10. (October 2003), pp. 1615-1623.
    by KR Coombes, HA Fritsche, C Clarke, JN Chen, KA Baggerly, JS Morris, LC Xiao, MC Hung, HM Kuerer
    posted to massspec by Gehrke on 2007-04-19 23:55:36 as ** along with 2 people nicholso gorlitsky
  • LIMPIC: a computational method for the separation of protein MALDI-TOF-MS signals from noise
    BMC Bioinformatics, Vol. 8 (26 March 2007), 101.
    by Dante Mantini, Francesca Petrucci, Damiana Pieragostino, Piero Del Boccio, Marta Di Nicola, Carmine Di Ilio, Giorgio Federici, Paolo Sacchetta, Silvia Comani, Andrea Urbani
    posted to massspec by Gehrke on 2007-04-04 01:15:24 as ** along with 1 person BIBLIOma
  • Mass spectrometry-based proteomics
    Nature, Vol. 422, No. 6928. (13 March 2003), pp. 198-207.
    by Ruedi Aebersold, Matthias Mann
    posted to review massspec by carlk on 2008-06-12 18:00:40 as ** along with 5 people olberd jmeppley dgront frohike sverzijl
  • Effects of HER2 overexpression on cell signaling networks governing proliferation and migration
    Mol Syst Biol, Vol. 2 (3 October 2006)
    by Alejandro Wolf-Yadlin, Neil Kumar, Yi Zhang, Sampsa Hautaniemi, Muhammad Zaman, Hyung-Do Kim, Viara Grantcharova, Douglas A Lauffenburger, Forest M White
    posted to cancer massspec signaling by balabu on 2006-10-31 18:35:01 as ** along with 3 people and 1 group jfr cdppublications pjasper CDP
  • notes Mass spectrometry-based proteomics turns quantitative.
    Nat Chem Biol, Vol. 1, No. 5. (October 2005), pp. 252-262.
    by SE Ong, M Mann
    posted to massspec by balabu on 2006-02-28 19:10:11 as read along with 1 person nedwards
  • Mass Spectrometry and Protein Analysis
    Science, Vol. 312, No. 5771. (14 April 2006), pp. 212-217.
    by Bruno Domon, Ruedi Aebersold
    posted to massspec by balabu on 2006-04-14 15:47:53 as ** along with 2 people jo_davies sverzijl
  • Effect of the proportion of organic material in bone on thermal decomposition of bone mineral: An investigation of a variety of bones from different species using thermogravimetric analysis coupled to mass spectrometry, high-temperature X-ray diffraction, and fourier transform infrared spectroscopy
    Calcif. Tissue Int., Vol. 75, No. 4. (2004), pp. 321-328.
    by LD Mkukuma, JMS Skakle, IR Gibson, CT Imrie, RM Aspden, DWL Hukins
    posted to bmd bone ftir human-animal massspec material-properties organic xray-diffraction by ashko on 2007-09-21 07:38:22 as read
  • Quantitative analysis of EGFRvIII cellular signaling networks reveals a combinatorial therapeutic strategy for glioblastoma
    Proceedings of the National Academy of Sciences, Vol. 104, No. 31. (31 July 2007), pp. 12867-12872.
    by Paul H Huang, Akitake Mukasa, Rudy Bonavia, Ryan A Flynn, Zachary E Brewer, Webster K Cavenee, Frank B Furnari, Forest M White
    posted to massspec combinations by aheilbut on 2008-07-21 19:33:40 as ** along with 1 person cdppublications
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