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Tag genomics [941 articles]

Articoli recentemente classificati sotto il tag genomics.
  • notes Here is the evidence, now what is the hypothesis? The complementary roles of inductive and hypothesis-driven science in the post-genomic era.
    Bioessays, Vol. 26, No. 1. (January 2004), pp. 99-105.
    by DB Kell, SG Oliver
  • The next steps for genomic medicine: challenges and opportunities for the developing world.
    Nature reviews. Genetics, Vol. 9 Suppl 1 (October 2008)
    posted to review india genomics gaps future by Zephyrus on 2008-10-06 02:38:11 as ** along with 1 person jyuh
  • Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis.
    Genomics (23 September 2008)
    by Iuliana Ionita-Laza, Angela J J Rogers, Christoph Lange, Benjamin A A Raby, Charles Lee
  • Comprehensive genomic characterization defines human glioblastoma genes and core pathways.
    Nature (4 September 2008)
    by , , Roger McLendon, Allan Friedman, Darrell Bigner, , Erwin G G Van Meir, Daniel J J Brat, Gena Marie Mastrogianakis, Jeffrey J J Olson, , Tom Mikkelsen, Norman Lehman, , Ken Aldape, W K K Alfred Yung, Oliver Bogler, , Scott Vandenberg, Mitchel Berger, Michael Prados, , Donna Muzny, Margaret Morgan, Steve Scherer, Aniko Sabo, Lynn Nazareth, Lora Lewis, Otis Hall, Yiming Zhu, Yanru Ren, Omar Alvi, Jiqiang Yao, Alicia Hawes, Shalini Jhangiani, Gerald Fowler, Anthony San Lucas, Christie Kovar, Andrew Cree, Huyen Dinh, Jireh Santibanez, Vandita Joshi, Manuel L L Gonzalez-Garay, Christopher A A Miller, Aleksandar Milosavljevic, Larry Donehower, David A A Wheeler, Richard A A Gibbs, , Kristian Cibulskis, Carrie Sougnez, Tim Fennell, Scott Mahan, Jane Wilkinson, Liuda Ziaugra, Robert Onofrio, Toby Bloom, Rob Nicol, Kristin Ardlie, Jennifer Baldwin, Stacey Gabriel, Eric S S Lander, , Li Ding, Robert S S Fulton, Michael D D McLellan, John Wallis, David E E Larson, Xiaoqi Shi, Rachel Abbott, Lucinda Fulton, Ken Chen, Daniel C C Koboldt, Michael C C Wendl, Rick Meyer, Yuzhu Tang, Ling Lin, John R R Osborne, Brian H H Dunford-Shore, Tracie L L Miner, Kim Delehaunty, Chris Markovic, Gary Swift, William Courtney, Craig Pohl, Scott Abbott, Amy Hawkins, Shin Leong, Carrie Haipek, Heather Schmidt, Maddy Wiechert, Tammi Vickery, Sacha Scott, David J J Dooling, Asif Chinwalla, George M M Weinstock, Elaine R R Mardis, Richard K K Wilson, , Gad Getz, Wendy Winckler, Roel G W G Verhaak, Michael S S Lawrence, Michael O'Kelly, Jim Robinson, Gabriele Alexe, Rameen Beroukhim, Scott Carter, Derek Chiang, Josh Gould, Supriya Gupta, Josh Korn, Craig Mermel, Jill Mesirov, Stefano Monti, Huy Nguyen, Melissa Parkin, Michael Reich, Nicolas Stransky, Barbara A A Weir, Levi Garraway, Todd Golub, Matthew Meyerson, , Lynda Chin, Alexei Protopopov, Jianhua Zhang, Ilana Perna, Sandy Aronson, Narayan Sathiamoorthy, Georgia Ren, Jun Yao, W Ruprecht R Wiedemeyer, Hyunsoo Kim, Sek Won Kong, Yonghong Xiao, Isaac S S Kohane, Jon Seidman, Peter J J Park, Raju Kucherlapati, , Peter W W Laird, Leslie Cope, James G G Herman, Daniel J J Weisenberger, Fei Pan, David Van Den Berg, Leander Van Neste, Joo Mi Yi, Kornel E E Schuebel, Stephen B B Baylin, , Devin M M Absher, Jun Z Z Li, Audrey Southwick, Shannon Brady, Amita Aggarwal, Tisha Chung, Gavin Sherlock, James D D Brooks, Richard M M Myers, , Paul T T Spellman, Elizabeth Purdom, Lakshmi R R Jakkula, Anna V V Lapuk, Henry Marr, Shannon Dorton, Yoon Gi Choi, Ju Han, Amrita Ray, Victoria Wang, Steffen Durinck, Mark Robinson, Nicholas J J Wang, Karen Vranizan, Vivian Peng, Eric Van Name, Gerald V V Fontenay, John Ngai, John G G Conboy, Bahram Parvin, Heidi S S Feiler, Terence P P Speed, Joe W W Gray, , Cameron Brennan, Nicholas D D Socci, Adam Olshen, Barry S S Taylor, Alex Lash, Nikolaus Schultz, Boris Reva, Yevgeniy Antipin, Alexey Stukalov, Benjamin Gross, Ethan Cerami, Wei Qing Wang, Li-Xuan X Qin, Venkatraman E E Seshan, Liliana Villafania, Magali Cavatore, Laetitia Borsu, Agnes Viale, William Gerald, Chris Sander, Marc Ladanyi, , Charles M M Perou, D Neil Hayes, Michael D D Topal, Katherine A A Hoadley, Yuan Qi, Sai Balu, Yan Shi, Junyuan Wu, , Robert Penny, Michael Bittner, Troy Shelton, Elizabeth Lenkiewicz, Scott Morris, Debbie Beasley, Sheri Sanders, , Ari Kahn, Robert Sfeir, Jessica Chen, David Nassau, Larry Feng, Erin Hickey, Jinghui Zhang, John N N Weinstein, , Anna Barker, Daniela S S Gerhard, Joseph Vockley, Carolyn Compton, Jim Vaught, Peter Fielding, Martin L L Ferguson, Carl Schaefer, Subhashree Madhavan, Kenneth H H Buetow, , Francis Collins, Peter Good, Mark Guyer, Brad Ozenberger, Jane Peterson, Elizabeth Thomson
  • notes New handles on genomic structural variation.
    Nature genetics, Vol. 40, No. 10. (October 2008)
    posted to variation snp review perspectives genomics cnv by Zephyrus on 2008-10-06 02:43:19 as **
  • Functional genomics of cancer.
    Current opinion in genetics & development (5 August 2008)
    by Edison T T Liu
  • Structural variation in the human genome: the impact of copy number variants on clinical diagnosis.
    Genetics in medicine : official journal of the American College of Medical Genetics, Vol. 9, No. 9. (September 2007), pp. 600-606.
    posted to cnv genomics review by Zephyrus on 2008-07-21 00:56:10 as **
  • Comparative genomics and experimental promoter analysis reveal functional liver-specific elements in mammalian hepatic lipase genes
    BMC Genomics, Vol. 8 (11 April 2007), 99.
    by Diederik van Deursen, Gert-Jan Botma, Hans Jansen, Adrie JM Verhoeven
    posted to genomics hnf4 mining targets by yevishere on 2008-01-03 23:20:00 as **** along with 1 group VUMCGenomics
  • A multidimensional analysis of genes mutated in breast and colorectal cancers
    Genome Res. (10 August 2007), gr.6431107.
    by Jimmy Lin, Christine M Gan, Xiaosong Zhang, Sian Jones, Tobias Sjoblom, Laura D Wood, Williams D Parsons, Nickolas Papadopoulos, Kenneth W Kinzler, Bert Vogelstein, Giovanni Parmigiani, Victor E Velculescu
    posted to breast colon genomics somatic by xingxu on 2008-02-28 22:01:18 as ** along with 3 people chrisamiller jfr cerami
  • Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome
    Science, Vol. 309, No. 5741. (09 September 2005), pp. 1728-1732.
    by Jay Shendure, Gregory J Porreca, Nikos B Reppas, Xiaoxia Lin, John P Mccutcheon, Abraham M Rosenbaum, Michael D Wang, Kun Zhang, Robi D Mitra, George M Church
  • Genome variation and evolution of the malaria parasite Plasmodium falciparum.
    Nat Genet (10 December 2006)
    by Daniel C C Jeffares, Arnab Pain, Andrew Berry, Anthony V V Cox, James Stalker, Catherine E E Ingle, Alan Thomas, Michael A A Quail, Kyle Siebenthall, Anne-Catrin C Uhlemann, Sue Kyes, Sanjeev Krishna, Chris Newbold, Emmanouil T T Dermitzakis, Matthew Berriman
    posted to genomics malaria by xingxu on 2007-08-17 16:49:46 as ** along with 4 people aswin fernan shung Neeperando
  • The molecular signature of selection underlying human adaptations
    American Journal of Physical Anthropology, Vol. 131, No. S43. (2006), pp. 89-130.
    by Eugene E Harris, Diogo Meyer
  • REPLICATION AND TRANSCRIPTION: SHAPING THE LANDSCAPE OF THE GENOME
    Nat Rev Genet, Vol. 6, No. 9. (2005), pp. 669-677.
    by Lyubomira Chakalova, Emmanuel Debrand, Jennifer A Mitchell, Cameron S Osborne, Peter Fraser
  • A high-resolution map of transcription in the yeast genome
    PNAS, Vol. 103, No. 14. (4 April 2006), pp. 5320-5325.
    by Lior David, Wolfgang Huber, Marina Granovskaia, Joern Toedling, Curtis J Palm, Lee Bofkin, Ted Jones, Ronald W Davis, Lars M Steinmetz
  • Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome
    Nature Genetics, Vol. 39, No. 1. (10 December 2006), pp. 126-130.
    by Jianbing Mu, Philip Awadalla, Junhui Duan, Kate M Mcgee, Jon Keebler, Karl Seydel, Gilean AT Mcvean, Xin-Zhuan Su
  • High-throughput oncogene mutation profiling in human cancer
    Nature Genetics, Vol. 39, No. 3. (11 February 2007), pp. 347-351.
    by Roman K Thomas, Alissa C Baker, Ralph M Debiasi, Wendy Winckler, Thomas Laframboise, William M Lin, Meng Wang, Whei Feng, Thomas Zander, Laura E Macconnaill, Jeffrey C Lee, Rick Nicoletti, Charlie Hatton, Mary Goyette, Luc Girard, Kuntal Majmudar, Liuda Ziaugra, Kwok-Kin Wong, Stacey Gabriel, Rameen Beroukhim, Michael Peyton, Jordi Barretina, Amit Dutt, Caroline Emery, Heidi Greulich, Kinjal Shah, Hidefumi Sasaki, Adi Gazdar, John Minna, Scott A Armstrong, Ingo K Mellinghoff, Stephen F Hodi, Glenn Dranoff, Paul S Mischel, Tim F Cloughesy, Stan F Nelson, Linda M Liau, Kirsten Mertz, Mark A Rubin, Holger Moch, Massimo Loda, William Catalona, Jonathan Fletcher, Sabina Signoretti, Frederic Kaye, Kenneth C Anderson, George D Demetri, Reinhard Dummer, Stephan Wagner, Meenhard Herlyn, William R Sellers, Matthew Meyerson, Levi A Garraway
  • Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori.
    Nature, Vol. 397, No. 6715. (14 January 1999), pp. 176-180.
    by RA Alm, LS Ling, DT Moir, BL King, ED Brown, PC Doig, DR Smith, B Noonan, BC Guild, BL deJonge, G Carmel, PJ Tummino, A Caruso, M Uria-Nickelsen, DM Mills, C Ives, R Gibson, D Merberg, SD Mills, Q Jiang, DE Taylor, GF Vovis, TJ Trust
    posted to genomics historical pylori by xingxu on 2008-04-03 09:07:04 as ** along with 1 person bjorns
  • Adaptive Gene Expression Divergence Inferred from Population Genomics
    PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e187.
    by Alisha K Holloway, Mara K Lawniczak, Jason G Mezey, David J Begun, Corbin D Jones
  • Genomics and Biology Come Together to Fight HIV
    PLoS Biology, Vol. 6, No. 3. (1 March 2008), e76.
    by David B Goldstein
    posted to genomics gwa hiv review by xingxu on 2008-04-17 13:28:01 as **
  • Qualifying the relationship between sequence conservation and molecular function
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 201-205.
    by Gregory M Cooper, Christopher D Brown
    posted to genomics by xingxu on 2008-02-01 19:14:29 as ** along with 5 people aprasad brant djkt bpcusack nklee
  • Genome-wide association studies for complex traits: consensus, uncertainty and challenges
    Nature Reviews Genetics, Vol. 9, No. 5., pp. 356-369.
    by Mark I Mccarthy, Gonçalo R Abecasis, Lon R Cardon, David B Goldstein, Julian Little, John PA Ioannidis, Joel N Hirschhorn
  • Epistasis between deleterious mutations and the evolution of recombination
    Trends in Ecology & Evolution, Vol. In Press, Corrected Proof
    by Roger D Kouyos, Olin K Silander, Sebastian Bonhoeffer
  • Analysis of genetic variation in Ashkenazi Jews by high density SNP genotyping
    BMC Genetics, Vol. 9 (05 February 2008), 14.
    by Adam B Olshen, Bert Gold, Kirk E Lohmueller, Jeffrey P Struewing, Jaya Satagopan, Stefan A Stefanov, Eleazar Eskin, Tomas Kirchhoff, James A Lautenberger, Robert J Klein, Eitan Friedman, Larry Norton, Nathan A Ellis, Agnes Viale, Catherine S Lee, Patrick I Borgen, Andrew G Clark, Kenneth Offit, Jeff Boyd
  • Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 242-251.
    by Elfar Torarinsson, Zizhen Yao, Eric D Wiklund, Jesper B Bramsen, Claus Hansen, Jorgen Kjems, Niels Tommerup, Walter L Ruzzo, Jan Gorodkin
    posted to encode genomics rna_structure by xingxu on 2008-02-01 19:14:16 as ** along with 2 people djkt cabbagezs
  • notes Biological function of unannotated transcription during the early development of Drosophila melanogaster
    Nature Genetics, Vol. 38, No. 10. (03 September 2006), pp. 1151-1158.
    by Robert J Manak, Sujit Dike, Victor Sementchenko, Philipp Kapranov, Frederic Biemar, Jeff Long, Jill Cheng, Ian Bell, Srinka Ghosh, Antonio Piccolboni, Thomas R Gingeras
  • Leishmania major Friedlin chromosome 1 has an unusual distribution of protein-coding genes
    PNAS, Vol. 96, No. 6. (16 March 1999), pp. 2902-2906.
    by Peter J Myler, Lindsey Audleman, Theo Devos, Greg Hixson, Patti Kiser, Craig Lemley, Charles Magness, Erika Rickel, Ellen Sisk, Susan Sunkin, Steven Swartzell, Thomas Westlake, Patrick Bastien, Guoliang Fu, Alasdair Ivens, Kenneth Stuart
    posted to genomics kinetoplastid leishmania parasitology by xingxu on 2007-08-07 17:20:51 as **
  • Are Rare Variants Responsible for Susceptibility to Complex Diseases
    The American Journal of Human Genetics, Vol. 69, No. 1. (July 2001), pp. 124-137.
    by Jonathan K Pritchard
    posted to genomics opinion review by xingxu on 2008-07-17 15:51:36 as ** along with 1 person caseybrown
  • Signatures of Positive Selection in Genes Associated with Human Skin Pigmentation as Revealed from Analyses of Single Nucleotide Polymorphisms
    Annals of Human Genetics, Vol. 0, No. 0. (0000), pp. ???-???.
    posted to genomics selection by xingxu on 2007-10-04 21:45:57 as ** along with 3 people larios JBEgwa01 jasonbobe
  • Systematic analyses of the cancer genome: lessons learned from sequencing most of the annotated human protein-coding genes.
    Curr Opin Oncol, Vol. 20, No. 1. (January 2008), pp. 66-71.
    posted to cancer genomics review somatic by xingxu on 2008-02-28 22:00:41 as ** along with 1 person cerami
  • Large-scale analysis of pseudogenes in the human genome
    Current Opinion in Genetics & Development, Vol. 14, No. 4. (August 2004), pp. 328-335.
    by Zhaolei Zhang, Mark Gerstein
    posted to genomics pseudogene by xingxu on 2007-08-17 17:29:57 as **
  • Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray
    Genome Res. (4 September 2007), gr.6611807.
    by Housheng He, Jie Wang, Tao Liu, Shirley X Liu, Tiantian Li, Yunfei Wang, Zuwei Qian, Haixia Zheng, Xiaopeng Zhu, Tao Wu, Baochen Shi, Wei Deng, Wei Zhou, Geir Skogerbo, Runsheng Chen
  • The complete genome sequence of the gastric pathogen Helicobacter pylori.
    Nature, Vol. 388, No. 6642. (7 August 1997), pp. 539-547.
    by JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, RD Fleischmann, KA Ketchum, HP Klenk, S Gill, BA Dougherty, K Nelson, J Quackenbush, L Zhou, EF Kirkness, S Peterson, B Loftus, D Richardson, R Dodson, HG Khalak, A Glodek, K McKenney, LM Fitzegerald, N Lee, MD Adams, JC Venter
    posted to genomics pylori sequencing by xingxu on 2008-03-19 23:53:19 as ** along with 2 people evaf bjorns
  • A New Approach for Using Genome Scans to Detect Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 5, No. 7. (19 June 2007)
    by Kun Tang, Kevin R R Thornton, Mark Stoneking
  • Analysis and Application of European Genetic Substructure Using 300 K SNP Information
    PLoS Genetics, Vol. 4, No. 1. (1 January 2008), e4.
    by Chao Tian, Robert M Plenge, Michael Ransom, Annette Lee, Pablo Villoslada, Carlo Selmi, Lars Klareskog, Ann E Pulver, Lihong Qi, Peter K Gregersen, Michael F Seldin
  • Gene Network Inference via Structural Equation Modeling in Genetical Genomics Experiments.
    Genetics (3 February 2008)
    by Bing Liu, Alberto de la Fuente, Ina Hoeschele
  • Evolutionary developmental biology and genomics
    Nature Reviews Genetics, Vol. 8, No. 12., pp. 932-942.
    by Cristian Cañestro, Hayato Yokoi, John H Postlethwait
  • Geographic patterns of genome admixture in Latin American Mestizos.
    PLoS genetics, Vol. 4, No. 3. (March 2008)
    posted to admixture genomics latino by xingxu on 2008-04-17 12:50:53 as **
  • Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome.
    Cell, Vol. 128, No. 6. (23 March 2007), pp. 1231-1245.
    by TH Kim, ZK Abdullaev, AD Smith, KA Ching, DI Loukinov, RD Green, MQ Zhang, VV Lobanenkov, B Ren
    posted to ctcf genomics insulator by xingxu on 2008-05-15 17:33:00 as ** along with 2 people sebastien_vigneau rschulz
  • The Consensus Coding Sequences of Human Breast and Colorectal Cancers
    Science, Vol. 314, No. 5797. (7 September 2006), pp. 268-274.
    by Tobias Sjoblom, Sian Jones, Laura D Wood, Williams D Parsons, Jimmy Lin, Thomas Barber, Diana Mandelker, Rebecca J Leary, Janine Ptak, Natalie Silliman, Steve Szabo, Phillip Buckhaults, Christopher Farrell, Paul Meeh, Sanford D Markowitz, Joseph Willis, Dawn Dawson, James K Willson, Adi F Gazdar, James Hartigan, Leo Wu, Changsheng Liu, Giovanni Parmigiani, Ben H Park, Kurtis E Bachman, Nickolas Papadopoulos, Bert Vogelstein, Kenneth W Kinzler, Victor E Velculescu
  • Discerning the Ancestry of European Americans in Genetic Association Studies
    PLoS Genetics, Vol. 4, No. 1. (1 January 2008), e236.
    by Alkes L Price, Johannah Butler, Nick Patterson, Cristian Capelli, Vincenzo L Pascali, Francesca Scarnicci, Andres Ruiz-Linares, Leif Groop, Angelica A Saetta, Penelope Korkolopoulou, Uri Seligsohn, Alicja Waliszewska, Christine Schirmer, Kristin Ardlie, Alexis Ramos, James Nemesh, Lori Arbeitman, David B Goldstein, David Reich, Joel N Hirschhorn
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
  • Haplotype Block Structure Is Conserved across Mammals
    PLoS Genetics, Vol. 2, No. 7. (1 July 2006), e121.
    by Victor Guryev, Bart M Smits, Jose van de Belt, Mark Verheul, Norbert Hubner, Edwin Cuppen
    posted to genomics by xingxu on 2007-10-04 21:46:09 as **
  • Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans
    PLoS Biology, Vol. 5, No. 11. (1 November 2007), e310.
    by David J Begun, Alisha K Holloway, Kristian Stevens, Ladeana W Hillier, Yu-Ping Poh, Matthew W Hahn, Phillip M Nista, Corbin D Jones, Andrew D Kern, Colin N Dewey, Lior Pachter, Eugene Myers, Charles H Langley
  • Comparative genomic analysis of three Leishmania species that cause diverse human disease
    Nature Genetics, Vol. 39, No. 7. (17 June 2007), pp. 839-847.
    by Christopher S Peacock, Kathy Seeger, David Harris, Lee Murphy, Jeronimo C Ruiz, Michael A Quail, Nick Peters, Ellen Adlem, Adrian Tivey, Martin Aslett, Arnaud Kerhornou, Alasdair Ivens, Audrey Fraser, Marie-Adele Rajandream, Tim Carver, Halina Norbertczak, Tracey Chillingworth, Zahra Hance, Kay Jagels, Sharon Moule, Doug Ormond, Simon Rutter, Rob Squares, Sally Whitehead, Ester Rabbinowitsch, Claire Arrowsmith, Brian White, Scott Thurston, Frédéric Bringaud, Sandra L Baldauf, Adam Faulconbridge, Daniel Jeffares, Daniel P Depledge, Samuel O Oyola, James D Hilley, Loislene O Brito, Luiz RO Tosi, Barclay Barrell, Angela K Cruz, Jeremy C Mottram, Deborah F Smith, Matthew Berriman
    posted to genomics kinetoplastid leishmania parasitology by xingxu on 2007-08-07 16:58:46 as ****
  • The human disease network
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690.
    by Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-Laszlo Barabasi
  • Rates of Genome Evolution and Branching Order from Whole Genome Analysis
    Mol Biol Ev