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Tag enhancer-prediction [29 articles]

Articoli recentemente classificati sotto il tag enhancer-prediction.
  • Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.
    BMC Bioinformatics, Vol. 3 (24 October 2002)
    by N Rajewsky, M Vergassola, U Gaul, ED Siggia
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:13:43 as ** along with 5 people and 1 group ansobol adepace koller Stew csdhwang EisenLab
  • Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency.
    BMC Bioinformatics, Vol. 4 (22 December 2003)
    by AG Nazina, DA Papatsenko
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 09:21:45 as ** along with 1 group EisenLab
  • CisModule: de novo discovery of cis-regulatory modules by hierarchical mixture modeling.
    Proc Natl Acad Sci U S A, Vol. 101, No. 33. (17 August 2004), pp. 12114-12119.
    by Q Zhou, WH Wong
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 08:38:23 as ** along with 2 people and 1 group ep161302 dpollard EisenLab
  • De novo cis-regulatory module elicitation for eukaryotic genomes
    PNAS, Vol. 102, No. 20. (17 May 2005), pp. 7079-7084.
    by Mayetri Gupta, Jun S Liu
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 08:37:52 as ** along with 3 people and 1 group ihpark tuck lusk EisenLab
  • Using hexamers to predict cis-regulatory modules in Drosophila.
    BMC Bioinformatics, Vol. 6, No. 1. (27 October 2005)
    by Bob Y Chan, Dennis Kibler
    posted to algorithm enhancer-prediction by indigoviolet on 2005-11-18 06:30:11 as *** along with 4 people and 1 group brant troels_marstrand postrational wrowell EisenLab
  • Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (22 January 2002), pp. 757-762.
    by BP Berman, Y Nibu, BD Pfeiffer, P Tomancak, SE Celniker, M Levine, GM Rubin, MB Eisen
    posted to algorithm enhancer-prediction by indigoviolet on 2007-11-19 02:50:40 as ** along with 3 people and 1 group Stew emptyhb csdhwang EisenLab
  • Detection of cis -element clusters in higher eukaryotic DNA
    Bioinformatics, Vol. 17, No. 10. (1 October 2001), pp. 878-889.
    by Martin C Frith, Ulla Hansen, Zhiping Weng
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 09:15:36 as ** along with 1 group EisenLab
  • CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by R Sharan, I Ovcharenko, A Ben-Hur, RM Karp
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 05:41:45 as ** along with 1 person and 1 group dquest EisenLab
  • Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences
    Nucl. Acids Res., Vol. 30, No. 14. (15 July 2002), pp. 3214-3224.
    by Martin C Frith, John L Spouge, Ulla Hansen, Zhiping Weng
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 09:15:32 as ** along with 1 person and 1 group xili03 EisenLab
  • Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2738-2750.
    by YH Grad, FP Roth, MS Halfon, GM Church
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-11 10:22:44 as ** along with 1 person and 1 group maximilianh EisenLab
  • Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo.
    Proc Natl Acad Sci U S A, Vol. 99, No. 2. (22 January 2002), pp. 763-768.
    by M Markstein, P Markstein, V Markstein, MS Levine
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:38:23 as ** along with 1 person and 1 group dpollard EisenLab
  • Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2858-2864.
    by Pierstorff, Nora, Bergman, M Casey, Wiehe, Thomas
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:15:18 as ** along with 2 people and 1 group brant emilyhare EisenLab
  • Identification of regulatory regions which confer muscle-specific gene expression
    Journal of Molecular Biology, Vol. 278, No. 1. (24 April 1998), pp. 167-181.
    by Wyeth W Wasserman, James W Fickett
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 05:40:08 as ** along with 2 people and 1 group isimpson gpalidwor EisenLab
  • Stubb: a program for discovery and analysis of cis-regulatory modules.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by S Sinha, Y Liang, E Siggia
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:14:38 as ** along with 2 people and 1 group Stew csdhwang EisenLab
  • SCORE: A computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data
    Proceedings of the National Academy of Sciences, Vol. 99, No. 15. (23 July 2002), pp. 9888-9893.
    by Mark Rebeiz, Nick L Reeves, James W Posakony
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:37:56 as ** along with 1 person and 1 group isimpson EisenLab
  • Searching for statistically significant regulatory modules.
    Bioinformatics, Vol. 19 Suppl 2 (October 2003)
    by TL Bailey, WS Noble
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 13:00:37 as ** along with 2 people and 2 groups xili03 stajich EisenLab Berkeley Mycology
  • Statistical significance of cis-regulatory modules
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Dustin Schones, Andrew Smith, Michael Zhang
    posted to algorithm enhancer-prediction by indigoviolet on 2007-11-19 10:13:21 as ** along with 8 people and 1 group dpollard dquest sebastien_vigneau shigepong SeungjoonOh GustavoLacerda nklee xili03 EisenLab
  • Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila.
    BMC Bioinformatics, Vol. 5 (9 September 2004)
    by S Sinha, MD Schroeder, U Unnerstall, U Gaul, ED Siggia
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:14:10 as ** along with 1 group EisenLab
  • Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test.
    BMC Bioinformatics, Vol. 6 (2005)
    by I Abnizova, R te Boekhorst, K Walter, WR Gilks
    posted to algorithm enhancer-prediction by indigoviolet on 2007-03-22 01:18:58 as ** along with 1 person and 1 group smiddha EisenLab
  • ClusterDraw web server: a tool to identify and visualize clusters of binding motifs for transcription factors
    Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 1032-1034.
    by Papatsenko, Dmitri
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 09:12:26 as ** along with 1 person and 1 group jyuh EisenLab
  • Homotypic regulatory clusters in Drosophila.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 579-588.
    by AP Lifanov, VJ Makeev, AG Nazina, DA Papatsenko
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-05 12:56:45 as ** along with 1 person and 1 group tresch EisenLab
  • Cluster-Buster: finding dense clusters of motifs in DNA sequences
    Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3666-3668.
    by Martin C Frith, Michael C Li, Zhiping Weng
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 09:10:09 as ** along with 1 group EisenLab
  • Decoding human regulatory circuits.
    Genome Res, Vol. 14, No. 10A. (October 2004), pp. 1967-1974.
    by W Thompson, MJ Palumbo, WW Wasserman, JS Liu, CE Lawrence
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 09:09:40 as ** along with 1 person and 1 group chad_davis EisenLab
  • Modulefinder: a tool for computational discovery of cis regulatory modules.
    Pac Symp Biocomput (2005), pp. 519-530.
    by AA Philippakis, FS He, ML Bulyk
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 07:50:58 as ** along with 1 person and 1 group ccr EisenLab
  • Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models
    Bioinformatics, Vol. 23, No. 16. (15 August 2007), pp. 2031-2037.
    by Wendy S Wong, Rasmus Nielsen
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-11 05:05:47 as ** along with 2 people and 1 group cabbagezs csdhwang EisenLab
  • Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by O Johansson, W Alkema, WW Wasserman, J Lagergren
    posted to algorithm enhancer-prediction by indigoviolet on 2007-12-12 07:47:27 as ** along with 1 person and 1 group xili03 EisenLab
  • Fine-Tuning Enhancer Models to Predict Transcriptional Targets across Multiple Genomes.
    PLoS ONE, Vol. 2, No. 11. (2007)
    by S Aerts, J van Helden, O Sand, BA Hassan
    posted to enhancer-prediction by barwil on 2008-02-06 09:51:48 as ** along with 4 people and 1 group isimpson brant maximilianh idonaldson cis-regulatory-evolution
  • A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 337-350.
    by O Elemento, N Slonim, S Tavazoie
    posted to enhancer-prediction by barwil on 2008-02-06 09:51:26 as ** along with 12 people and 2 groups ana brant cwbrown aswin cjeans zwang cabbagezs nklee maximilianh idonaldson sb_journal_club kristen EisenLab Motif Discovery
  • Predicting tissue-specific enhancers in the human genome.
    Genome Res (8 January 2007)
    by Len A A Pennacchio, Gabriela G G Loots, Marcelo A A Nobrega, Ivan Ovcharenko
    posted to enhancer-prediction by barwil on 2008-02-06 09:47:43 as *** along with 5 people and 1 group indigoviolet cwbrown maximilianh heliopais roys EisenLab
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