Registrati | Log in | FAQ      [?] 

Tag bionlp [99 articles]

Articoli recentemente classificati sotto il tag bionlp.
  • Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2049-2058.
    by R Jelier, G Jenster, LC Dorssers, CC van der Eijk, EM van Mulligen, B Mons, JA Kors
    posted to bionlp extraction relation by vlachmore on 2007-12-17 18:02:53 as ** along with 6 people and 2 groups irenas BioGeek yas fisherp daniel_schober Barend dbk-lab T_lab
  • Gene name identification and normalization using a model organism database
    J. of Biomedical Informatics, Vol. 37, No. 6. (December 2004), pp. 396-410.
    by Alexander A Morgan, Lynette Hirschman, Marc Colosimo, Alexander S Yeh, Jeff B Colombe
    posted to bionlp entity flybase named ner recognition by vlachmore on 2007-10-04 19:12:01 as read along with 4 people and 2 groups yas helliontroy bhaddow johnkork T_lab biomedical-nlp
  • Overview of BioCreAtIvE task 1B: normalized gene lists.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by L Hirschman, M Colosimo, A Morgan, A Yeh
    posted to bionlp gene name normalization by vlachmore on 2007-10-04 19:10:35 as ** along with 5 people and 2 groups TheresaNiederberger yas helliontroy zlu wbaumgar T_lab biomedical-nlp
  • Automatically annotating documents with normalized gene lists.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by J Crim, R McDonald, F Pereira
    posted to bionlp entity named ner recognition by vlachmore on 2007-10-04 19:09:42 as ** along with 2 people and 1 group oannes zlu Regulomics_UCHSC
  • Sequence Ontology annotation guide: Conference Papers
    Comp. Funct. Genomics, Vol. 5, No. 8. (December 2004), pp. 642-647.
    by Karen Eilbeck, Suzanna E Lewis
    posted to bionlp ontology sequence by vlachmore on 2007-10-04 19:08:56 as **
  • BioIE: extracting informative sentences from the biomedical literature.
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2138-2139.
    by A Divoli, TK Attwood
    posted to bionlp by vlachmore on 2007-12-17 18:00:26 as ** along with 2 people and 1 group irenas dullhunk dbk-lab
  • Bootstrapping the recognition and anaphoric linking of named entities in Drosophila articles.
    Pac Symp Biocomput (2006), pp. 100-111.
    by A Vlachos, C Gasperin, I Lewin, T Briscoe
    posted to bionlp bootstrapping entity gene named recognition by vlachmore on 2007-10-08 21:37:08 as read along with 2 people and 1 group helliontroy balex biomedical-nlp
  • Natural Language Processing in aid of FlyBase curators
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Nikiforos Karamanis, Ruth Seal, Ian Lewin, Peter Mcquilton, Andreas Vlachos, Caroline Gasperin, Rachel Drysdale, Ted Briscoe
    posted to bionlp curation flyslip by vlachmore on 2008-04-15 12:11:24 as ** along with 2 people Gaetan hpiwowar
  • Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction.
    Bioinformatics (25 November 2004)
    by Carlos Santos, Daniela Eggle, David J J States
    posted to bionlp curation by vlachmore on 2007-12-17 17:58:14 as ** along with 2 people and 1 group thomaskelder irenas dbk-lab
  • Gene clustering by Latent Semantic Indexing of MEDLINE abstracts
    Bioinformatics, Vol. 21, No. 1., 104.
    by Ramin Homayouni, Kevin Heinrich, Lai Wei, Michael W Berry
    posted to bionlp clustering gene indexing latent lsi semantic by vlachmore on 2007-12-17 17:56:20 as **** along with 2 people and 1 group yas benny T_lab
  • Text Mining for Biology And Biomedicine
    (2005)
    by Sophia Ananiadou, John Mcnaught
    posted to bionlp by vlachmore on 2007-10-08 21:21:28 as ** along with 1 person and 1 group henk-cul dbmi-nlp
  • MedPost: a part-of-speech tagger for bioMedical text.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2320-2321.
    by L Smith, T Rindflesch, WJ Wilbur
    posted to bionlp part-of-speech by vlachmore on 2007-12-17 17:52:23 as ** along with 5 people and 4 groups TheresaNiederberger irenas yas hpiwowar kkaiser dbk-lab T_lab IEG dbmi-nlp
  • Weakly Supervised Learning Methods for Improving the Quality of Gene Name Normalization Data
    (2005)
    by Ben Wellner
    posted to bionlp gene normalization semi-supervised by vlachmore on 2007-12-17 17:51:03 as **
  • Mining terminological knowledge in large biomedical corpora.
    Pac Symp Biocomput (2003), pp. 415-426.
    by H Liu, C Friedman
    posted to bionlp by vlachmore on 2007-10-04 18:48:50 as ** along with 2 people and 1 group irenas daniel_schober dbk-lab
  • Enhancing HMM-based biomedical named entity recognition by studying special phenomena.
    J Biomed Inform, Vol. 37, No. 6. (December 2004), pp. 411-422.
    by J Zhang, D Shen, G Zhou, J Su, CL Tan
    posted to bionlp entity hmm named ner recognition by vlachmore on 2007-12-17 17:46:22 as read along with 2 people and 1 group irenas bhaddow dbk-lab
  • A flexible measure of contextual similarity for biomedical terms.
    Pac Symp Biocomput (2005), pp. 197-208.
    by I Spasić, S Ananiadou
    posted to bionlp context measure similarity by vlachmore on 2007-12-17 17:44:06 as ** along with 1 person and 1 group irenas dbk-lab
  • Protein structures and information extraction from biological texts: the PASTA system.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 135-143.
    by R Gaizauskas, G Demetriou, PJ Artymiuk, P Willett
    posted to bionlp entity named ner recognition by vlachmore on 2007-10-04 18:44:43 as ** along with 3 people and 2 groups yggdrasil irenas caporaso dbk-lab biomedical-nlp
  • Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by R Küffner, K Fundel, R Zimmer
    posted to bionlp mining text by vlachmore on 2007-12-17 17:38:33 as ** along with 5 people and 2 groups irenas chad_davis yas fisherp incovoma dbk-lab T_lab
  • Anaphora Resolution in Biomedical Literature
    (2002)
    by J Castano, J Zhang, J Pustejovsky
    posted to anaphora bionlp resolution by vlachmore on 2007-10-04 18:36:35 as **
  • Tagging gene and protein names in full text articles
    (2002), pp. 9-13.
    by Lorraine Tanabe, John W Wilbur
    posted to bionlp entity named recognition by vlachmore on 2007-12-17 17:35:05 as **
  • Accomplishments and challenges in literature data mining for biology.
    Bioinformatics, Vol. 18, No. 12. (December 2002), pp. 1553-1561.
    by L Hirschman, JC Park, J Tsujii, L Wong, CH Wu
    posted to bionlp entity named recognition by vlachmore on 2007-10-04 18:30:58 as ** along with 6 people and 6 groups irenas Enro yas benny kehan caporaso dbk-lab biodiversity_conservation Bioinformatics T_lab biomedical-nlp GrassBase
  • CONAN: An Integrative System for Biomedical Literature Mining
    Progress in Artificial Intelligence (2005), pp. 248-259.
    by Rainer Malik, Arno Siebes
    posted to bionlp by vlachmore on 2007-12-17 17:33:10 as read
  • Rutabaga by any other name: extracting biological names
    Journal of Biomedical Informatics, Vol. 35, No. 4. (August 2002), pp. 247-259.
    by Lynette Hirschman, Alexander A Morgan, Alexander S Yeh
    posted to bionlp bootstrapping entity named ner recognition by vlachmore on 2007-12-17 17:31:51 as **
  • BANNER: an executable survey of advances in biomedical named entity recognition.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 652-663.
    by R Leaman, G Gonzalez
    posted to recognition ner named name gene entity crf bionlp by vlachmore on 2008-05-09 14:25:32 as **
  • Constructing biological knowledge-bases by extracting information from text sources
    (1999), pp. 77-86.
    by M Craven, J Kumlien
    posted to bionlp by vlachmore on 2008-04-07 16:36:29 as ** along with 1 person and 1 group bundschu generif_paper
  • Mining of relations between proteins over biomedical scientific literature using a deep-linguistic approach
    Artif. Intell. Med., Vol. 39, No. 2. (February 2007), pp. 127-136.
    by Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Michael Hess, Christos Andronis, Ourania Konstandi, Andreas Persidis
    posted to bionlp extraction relation by vlachmore on 2008-01-23 18:00:12 as **
  • GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data
    by Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo A Duboue, Wubin Weng, Et
    posted to bionlp geneways by vlachmore on 2007-12-17 17:10:30 as ** along with 1 person renatomilani
  • Background and overview for KDD Cup 2002 task 1: information extraction from biomedical articles
    SIGKDD Explor. Newsl., Vol. 4, No. 2. (December 2002), pp. 87-89.
    by Alexander Yeh, Lynette Hirschman, Alexander Morgan
    posted to bionlp gene kdd normalization shared task by vlachmore on 2007-12-17 17:08:41 as ** along with 1 person and 1 group yas T_lab
  • Corpus annotation for mining biomedical events from literature
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jin D Kim, Tomoko Ohta, Jun'ichi Tsujii
    posted to annotation bionlp corpus event by vlachmore on 2008-01-08 20:31:52 as *** along with 8 people and 2 groups jyuh yas dullhunk bhaddow sobolevnrm gmonce wchapman mircea baker-group dbmi-nlp
  • Using BLAST for identifying gene and protein names in journal articles
    Gene, Vol. 259, No. 1-2. (23 December 2000), pp. 245-252.
    by Michael Krauthammer, Andrey Rzhetsky, Pavel Morozov, Carol Friedman
    posted to bionlp entity gene named ner recognition by vlachmore on 2007-10-04 17:57:57 as ** along with 3 people and 1 group yggdrasil yas bhaddow T_lab
  • Data preparation and interannotator agreement: BioCreAtIvE task 1B.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by ME Colosimo, AA Morgan, AS Yeh, JB Colombe, L Hirschman
    posted to bionlp gene identifier normalization shared task by vlachmore on 2007-12-17 16:57:02 as ** along with 4 people and 2 groups yas blackbart helliontroy zlu T_lab biomedical-nlp
  • A graph-search framework for associating gene identifiers with documents
    BMC Bioinformatics, Vol. 7 (10 October 2006), 440.
    by William W Cohen, Einat Minkov
    posted to algorithm bionlp gene graph normalization by vlachmore on 2007-12-17 18:23:17 as ****
  • RelExRelation extraction using dependency parse trees
    Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 365-371.
    by Katrin Fundel, Robert Kuffner, Ralf Zimmer
    posted to bionlp dependency extraction parsing relation by vlachmore on 2007-10-19 16:50:18 as **** along with 3 people TheresaNiederberger chad_davis bhaddow
  • Learning string similarity measures for gene/protein name dictionary look-up using logistic regression.
    Bioinformatics (12 August 2007)
    by Yoshimasa Tsuruoka, John McNaught, Jun'ichi Tsujii, Sophia Ananiadou
    posted to bionlp gene name normalization by vlachmore on 2007-10-31 13:28:12 as **** along with 3 people jyuh dullhunk bhaddow
  • Use of support vector machines in extended named entity recognition
    (2002)
    by K Takeuchi, N Collier
    posted to bionlp entity machines named recognition shared support svms task vector by vlachmore on 2007-12-17 18:08:15 as **
  • Automatic term list generation for entity tagging
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 651-657.
    by Ted Sandler, Andrew I Schein, Lyle H Ungar
    posted to bionlp clustering crf distributional entity generation tagging term by vlachmore on 2007-12-10 14:56:05 as read along with 1 person johnkork
  • Overview of BioCreAtIvE: critical assessment of information extraction for biology.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by L Hirschman, A Yeh, C Blaschke, A Valencia
    posted to bionlp by vlachmore on 2007-10-08 11:49:16 as read along with 6 people and 2 groups yggdrasil yas helliontroy bhaddow johnkork leechuck T_lab biomedical-nlp
  • A system for identifying named entities in biomedical text: how results from two evaluations reflect on both the system and the evaluations: Conference Papers
    Comp. Funct. Genomics, Vol. 6, No. 1-2. (2005), pp. 77-85.
    by Shipra Dingare, Malvina Nissim, Jenny Finkel, Christopher Manning, Claire Grover
    posted to agreement bionlp inter-annotator by vlachmore on 2007-10-08 11:44:42 as read along with 2 people and 1 group alanrw helliontroy biomedical-nlp
  • Textpresso: an ontology-based information retrieval and extraction system for biological literature.
    PLoS Biol, Vol. 2, No. 11. (November 2004)
    by HM Müller, EE Kenny, PW Sternberg
    posted to bionlp extraction gene_ontology information ontology retrieval by vlachmore on 2007-11-26 17:56:15 as read along with 11 people and 3 groups irenas Enro jyuh yas dullhunk hpiwowar fisherp zlu daniel_schober diogomartins mroos dbk-lab T_lab AID
  • Comparative analysis of five protein-protein interaction corpora
    BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008)
    by Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Bjorne, Filip Ginter, Tapio Salakoski
    posted to protein-protein interaction bionlp by vlachmore on 2008-05-09 15:34:29 as ** along with 2 people and 1 group kluck laughcry BioInfPDL
  • Automatic classification of verbs in biomedical texts
    (2006), pp. 345-352.
    by Anna Korhonen, Yuval Krymolowski, Nigel Collier
    posted to bionlp bottleneck classification clustering frames information subcategorization verb by vlachmore on 2007-12-03 15:02:28 as read
  • Normalizing biomedical terms by minimizing ambiguity and variability
    BMC Bioinformatics, Vol. 9, No. Suppl 3. (2008)
    by Yoshimasa Tsuruoka, John Mcnaught, Sophia Ananiadou
    posted to rules normalization gene bionlp by vlachmore on 2008-05-09 15:33:01 as ** along with 1 person dullhunk
  • Combining linguistic and structural descriptors for mining biomedical literature
    (2006), pp. 62-64.
    by Nadia Zerida, Nadine Lucas, Bruno Crémilleux
    posted to bionlp corpora language mining nlp by spinaltap526 on 2008-03-06 02:49:54 as ****
  • Information extraction from full text scientific articles: where are the keywords?
    BMC Bioinformatics, Vol. 4, No. 1. (29 May 2003)
    by PK Shah, C Perez-Iratxeta, P Bork, MA Andrade
    posted to bionlp keywords linguistics nlp summarization by spinaltap526 on 2008-03-24 15:38:58 as **** along with 9 people and 2 groups snuppepuppan Enro matzke miguel kuhn yas natsu helliontroy balex T_lab biomedical-nlp
  • Text Mining for Biology And Biomedicine
    (30 December 2005)
    posted to biology bionlp language mining text by spinaltap526 on 2008-04-05 17:15:51 as *** along with 5 people benyus dullhunk zlu mircea farzanehs
  • Text-mining and information-retrieval services for molecular biology.
    Genome Biol, Vol. 6, No. 7. (2005)
    by M Krallinger, A Valencia
    posted to nlp linguistics informatics bionlp by spinaltap526 on 2008-05-01 18:17:59 as **** along with 8 people and 6 groups irenas Enro carlblesius textoris yas caporaso shimah78us cjeans dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab biomedical-nlp
  • e-LiSe - an online tool for finding needles in the "(Medline) haystack"
    Bioinformatics (5 March 2008), btn086.
    by Arek Gladki, Pawel Siedlecki, Szymon Kaczanowski, Piotr Zielenkiewicz
    posted to bionlp information medline retrieval by spinaltap526 on 2008-04-11 17:11:15 as ** along with 2 people dullhunk Gaetan
  • Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results
    Journal of Biomedical Discovery and Collaboration, Vol. 3 (15 February 2008), 2.
    by Neil R Smalheiser, Wei Zhou, Vetle I Torvik
    posted to bionlp provisional retrieval search by spinaltap526 on 2008-03-24 17:27:15 as ** along with 4 people yas Enro jyuh Gaetan
  • Text pattern visualization for analysis of biology full text and captions
    Bioinformatics Conference, 2003. CSB 2003. Proceedings of the 2003 IEEE (2003), pp. 648-651.
    by AE Grimes, RP Futrelle
    posted to biology bionlp captions corpora diagrams figures language nlp by spinaltap526 on 2008-03-05 16:32:39 as read along with 1 person and 1 group helliontroy biomedical-nlp
  • Parts-of-Speech Tagger Errors Do Not Necessarily Degrade Accuracy in Extracting Information from Biomedical Text
    (2 Apr 2008)
    by Maurice HT Ling, Christophe Lefevre, Kevin R Nicholas
    posted to pos-tagging linguistics errors bionlp by spinaltap526 on 2008-04-23 20:17:06 as **
    • Puoi citare questa pagina come: http://www.citeulike.org/tag/bionlp

    Result page: 1 2 Next RIS BibTeX RSS
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.