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Tag alternative_splicing [139 articles]

Articoli recentemente classificati sotto il tag alternative_splicing.
  • Identification, molecular cloning, expression and chromosome mapping of a family of transformation upregulated hnRNP-K proteins derived by alternative splicing.
    J Mol Biol, Vol. 236, No. 1. (11 February 1994), pp. 33-48.
    by K Dejgaard, H Leffers, HH Rasmussen, P Madsen, TA Kruse, B Gesser, H Nielsen, JE Celis
    posted to alternative_splicing hnrnpk by uz_labu_laimi on 2007-06-14 22:21:02 as *
  • Structural and functional diversity generated by alternative mRNA splicing
    Trends in Biochemical Sciences, Vol. 30, No. 9. (September 2005), pp. 515-521.
    by Jorg Stetefeld, Markus A Ruegg
    posted to alternative_splicing enzyme by tny on 2007-04-02 14:54:20 as ** along with 1 person Jporci
  • The SL1 trans-spliced leader RNA performs an essential embryonic function in Caenorhabditis elegans that can also be supplied by SL2 RNA.
    Genes and Development, Vol. 10 (1996), pp. 1543-1556.
    by KC Ferguson, PJ Heid, JH Rothman
    posted to zygote wormbase w09c21 transcription_factors_metabolism transcription_factors_genetics rrs-1 rna_splicing rna_genetics r12a14 nematode myo-3 mutation molecular_sequence_data k12f21 hlh-1 ges-1 genes_structural_helminth genes_reiterated genes_lethal embryo_non_mammalian elt-1 elegans dna_binding_proteins_metabolism dna_binding_proteins_genetics celegans caenorhabditis_elegans_genetics caenorhabditis_elegans_embryology caenorhabditis_elegans c_elegans binding_sites base_sequence b03041 autoantigens_metabolism autoantigens_genetics article alternative_splicing by tharris on 2008-09-17 01:43:35 as *** along with 1 group C. elegans / WormBase
  • xol-1 acts as an early switch in the C. elegans male/hermaphrodite decision.
    Cell, Vol. 80 (1995), pp. 71-82.
    by NE Rhind, LM Miller, JB Kopczynski, BJ Meyer
    posted to xol-1 wormbase sex_determination sdc-2 rna_messenger_metabolism rna_messenger_genetics rna_helminth_metabolism rna_helminth_genetics recombinant_fusion_proteins_biosynthesis nematode mutagenesis_site_directed molecular_sequence_data hermaphroditism_genetics helminth_proteins_physiology helminth_proteins_genetics helminth_proteins_chemistry genes_helminth gene_expression_regulation_developmental gastrula_metabolism embryo_non_mammalian_metabolism elegans dosage_compensation_genetics cloning_molecular celegans caenorhabditis_elegans_genetics caenorhabditis_elegans_embryology caenorhabditis_elegans c_elegans c35c51 c18a115 article amino_acid_sequence alternative_splicing by tharris on 2008-09-17 00:00:51 as *** along with 1 group C. elegans / WormBase
  • Mutations in the unc-52 gene responsible for body wall muscle defects in adult Caenorhabditis elegans are located in alternatively spliced exons.
    Genetics, Vol. 139 (1995), pp. 159-169.
    by TM Rogalski, EJ Gilchrist, GP Mullen, DG Moerman
    posted to zc1012 wormbase unc-52 proteoglycans_isolation_and_purification proteoglycans_genetics phenotype nematode mutation muscles_embryology muscles_abnormalities molecular_sequence_data helminth_proteins_isolation_and_purification helminth_proteins_genetics genes_helminth_genetics fluorescent_antibody_technique exons_genetics elegans dna_insertion_elements celegans caenorhabditis_elegans_genetics caenorhabditis_elegans_embryology caenorhabditis_elegans c_elegans base_sequence article antigens_helminth_genetics antigenic_determinants_genetics alternative_splicing alleles by tharris on 2008-09-16 23:56:37 as *** along with 1 group C. elegans / WormBase
  • The mec-8 gene of C. elegans encodes a protein with two RNA recognition motifs and regulates alternative splicing of unc-52 transcripts.
    Development, Vol. 122 (1996), pp. 1601-1610.
    by EA Lundquist, RK Herman, TM Rogalski, GP Mullen, DG Moerman, JE Shaw
    posted to zc1012 wormbase unc-52 transformation_genetic sequence_homology_amino_acid rna_messenger_metabolism rna_helminth_metabolism rna_binding_proteins_metabolism rna_binding_proteins_genetics proteoglycans_genetics proteoglycans_biosynthesis phenotype nematode mutation molecular_sequence_data models_genetic mec-8 helminth_proteins_metabolism helminth_proteins_genetics helminth_proteins_biosynthesis genes_helminth gene_expression_regulation f46a96 elegans cloning_molecular celegans caenorhabditis_elegans_genetics caenorhabditis_elegans c_elegans binding_sites base_sequence article amino_acid_sequence alternative_splicing by tharris on 2008-09-17 01:37:52 as *** along with 1 group C. elegans / WormBase
  • Eight genes and alternative RNA processing pathways generate an unexpectedly large diversity of cytoplasmic intermediate filament proteins in the nematode Caenorhabditis elegans.
    EMBO J, Vol. 13, No. 11. (1 June 1994), pp. 2625-2638.
    by H Dodemont, D Riemer, N Ledger, K Weber
    posted to wormbase w10g63 transcription_genetic sequence_homology_amino_acid sequence_alignment rna_messenger_metabolism rna_messenger_analysis protein_conformation nematode mua-6 molecular_weight molecular_sequence_data m61 k05b23 isoelectric_point introns intermediate_filament_proteins_genetics intermediate_filament_proteins_chemistry ifc-2 ifc-1 ifb-2 ifb-1 ifa-4 ifa-3 ifa-1 helminth_proteins_genetics helminth_proteins_chemistry genes_reiterated_genetics genes_helminth_genetics f52e105 f38b21 f37b42 f10c17 f10c12 exons elegans cloning_molecular chromosome_mapping celegans caenorhabditis_elegans_genetics caenorhabditis_elegans c_elegans base_sequence ascaris_lumbricoides_genetics article amino_acid_sequence alternative_splicing by tharris on 2008-09-16 23:33:32 as *** along with 1 group C. elegans / WormBase
  • The Caenorhabditis elegans muscle-affecting gene unc-87 encodes a novel thin filament-associated protein.
    Journal of Cell Biology, Vol. 127 (1994), pp. 79-93.
    by SD Goetinck, RH Waterston
    posted to wormbase unc-87 sequence_analysis_dna sequence_alignment rna_messenger_analysis rna_helminth_analysis recombinant_fusion_proteins_immunology recombinant_fusion_proteins_biosynthesis nematode mutation_physiology muscle_proteins_genetics muscle_proteins_chemistry muscle_proteins_analysis molecular_sequence_data microfilaments_chemistry helminth_proteins_genetics helminth_proteins_chemistry helminth_proteins_analysis genes_structural_helminth_genetics f08b64 elegans dna_helminth_analysis dna_complementary_analysis cloning_molecular celegans caenorhabditis_elegans_genetics caenorhabditis_elegans c_elegans base_sequence article antibodies_helminth amino_acid_sequence alternative_splicing by tharris on 2008-09-16 23:46:01 as *** along with 1 group C. elegans / WormBase
  • Comparison of two Caenorhabditis genes encoding FMRFamide(Phe-Met-Arg-Phe-NH2)-like peptides.
    Molecular Brain Research, Vol. 24 (1994), pp. 238-246.
    by K Schinkmann, C Li
    posted to wormbase translation_genetic sequence_homology_nucleic_acid sequence_homology_amino_acid restriction_mapping polymerase_chain_reaction neuropeptides_genetics neuropeptides_biosynthesis nematode molecular_sequence_data flp-1 f23b25 elegans dna_primers conserved_sequence celegans caenorhabditis_genetics caenorhabditis_elegans_genetics caenorhabditis_elegans c_elegans base_sequence article amino_acid_sequence alternative_splicing by tharris on 2008-09-16 23:34:07 as *** along with 1 group C. elegans / WormBase
  • Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms
    PNAS, Vol. 103, No. 22. (30 May 2006), pp. 8390-8395.
    by Pedro R Romero, Saima Zaidi, Ya Y Fang, Vladimir N Uversky, Predrag Radivojac, Christopher J Oldfield, Marc S Cortese, Megan Sickmeier, Tanguy Legall, Zoran Obradovic, Keith A Dunker
    posted to alternative_splicing metazoa multicellular by stajich on 2008-03-05 21:50:32 as ** along with 2 people and 3 groups eoghanharr dchughes G4ID Genetics-of-Gambling Berkeley Mycology
  • Identification and analysis of alternative splicing events conserved in human and mouse
    PNAS, Vol. 102, No. 8. (22 February 2005), pp. 2850-2855.
    by Gene W Yeo, Eric Van Nostrand, Dirk Holste, Tomaso Poggio, Christopher B Burge
    posted to alternative_splicing by stajich on 2007-01-12 00:35:18 as ** along with 3 people and 1 group eoghanharr radek penka Nie
  • Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes.
    Genome Res (6 March 2006)
    by Dmitry B B Malko, Vsevolod J J Makeev, Andrey A A Mironov, Mikhail S S Gelfand
    posted to evolution drosophila alternative_splicing by stajich on 2007-01-09 17:40:34 as ** along with 4 people and 4 groups eoghanharr marcius indigoviolet penka EisenLab Nie BioinfoCIPF SGU-CIPF
  • Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing
    BMC Evolutionary Biology, Vol. 7, No. 1. (2007)
    by Manuel Irimia, Jakob Rukov, David Penny, Scott Roy
    posted to alternative_splicing intron multicellular by stajich on 2007-11-09 05:42:15 as read along with 1 person balicea
  • Splicing in disease: disruption of the splicing code and the decoding machinery
    Nature Reviews Genetics, Vol. 8, No. 10. (29 August 2007), pp. 749-761.
    by Guey-Shin Wang, Thomas A Cooper
    posted to alternative_splicing disease by stajich on 2007-10-03 06:46:38 as ** along with 4 people and 2 groups dchughes cabbagezs mimulus_99 jyuh G4ID Genetics-of-Gambling
  • SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays
    Genome Biology, Vol. 9 (29 February 2008), R46.
    by Miguel A Anton, Dorleta Gorostiaga, Elizabeth Guruceaga, Victor Segura, Pedro Carmona-Saez, Alberto Pascual-Montano, Ruben Pio, Luis M Montuenga, Angel Rubio
    posted to algorithm alternative_splicing microarray by stajich on 2008-03-25 04:31:51 as ** along with 5 people and 1 group jfr huali Baten AlexanderPico jyuh Berkeley Mycology
  • Alternative Splicing Produces Two Endoglucanases with One or Two Carbohydrate-Binding Modules in Mucor circinelloides
    J. Bacteriol., Vol. 187, No. 9. (1 May 2005), pp. 3045-3051.
    by Yuko Baba, Atsushi Shimonaka, Jinichiro Koga, Hidetoshi Kubota, Toshiaki Kono
    posted to alternative_splicing mucor zygomycota by stajich on 2008-02-04 06:00:11 as ** along with 1 group Berkeley Mycology
  • Splicing and the Evolution of Proteins in Mammals
    PLoS Biology, Vol. 5, No. 2. (1 February 2007), e14.
    by Joanna L Parmley, Araxi O Urrutia, Lukasz Potrzebowski, Henrik Kaessmann, Laurence D Hurst
    posted to evolution intron phylogenetics protein protein_evolution alternative_splicing by stajich on 2007-06-27 05:34:01 as ** along with 7 people and 7 groups operon aalibes dpollard dchughes kehan jwestbrook gileswl biodiversity_conservation Bioinformatics EisenLab G4ID King_Lab GrassBase Genetics-of-Gambling
  • Isoform switching facilitates period control in the Neurospora crassa circadian clock.
    Mol Syst Biol, Vol. 4 (2008)
    by Ozgur E E Akman, James C W C Locke, Sanyi Tang, Isabelle Carré, Andrew J J Millar, David A A Rand
    posted to alternative_splicing circadian neurospora by stajich on 2008-02-17 21:02:21 as ** along with 1 group Berkeley Mycology
  • The "Alternative" Choice of Constitutive Exons throughout Evolution.
    PLoS Genet, Vol. 3, No. 11. (16 November 2007)
    by Galit Lev-Maor, Amir Goren, Noa Sela, Eddo Kim, Hadas Keren, Adi Doron-Faigenboim, Shelly Leibman-Barak, Tal Pupko, Gil Ast
    posted to alternative_splicing evolution splicing by stajich on 2008-04-10 22:24:26 as ** along with 2 people and 1 group sebastien_vigneau bpcusack Berkeley Mycology
  • Evolution of the 14-3-3 protein family: does the large number of isoforms in multicellular organisms reflect functional specificity?
    J Mol Evol, Vol. 51, No. 5. (November 2000), pp. 446-458.
    by M Rosenquist, P Sehnke, RJ Ferl, M Sommarin, C Larsson
    posted to alternative_splicing gene_family multicellular by stajich on 2006-12-08 20:36:34 as **
  • Evolution of alternative splicing after gene duplication.
    Genome Res (19 December 2005)
    by Zhixi Su, Jianmin Wang, Jun Yu, Xiaoqiu Huang, Xun Gu
    posted to gene_duplication alternative_splicing by stajich on 2007-01-09 17:39:40 as ** along with 1 person Cortel
  • Role of SR protein modular domains in alternative splicing specificity in vivo
    Nucl. Acids Res., Vol. 28, No. 24. (15 December 2000), pp. 4822-4831.
    by van der Houven, Kathryn Newton, Gavin R Screaton, Javier F Caceres
    posted to alternative_splicing splicing by stajich on 2008-01-30 23:48:34 as ** along with 1 group Berkeley Mycology
  • Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion.
    Genome Res, Vol. 16, No. 1. (January 2006), pp. 66-77.
    by NL Barbosa-Morais, M Carmo-Fonseca, S Aparício
    posted to splicing gene_family alternative_splicing by stajich on 2007-01-09 17:40:04 as ***
  • Current topics in genome evolution: Molecular mechanisms of new gene formation
    Cellular and Molecular Life Sciences (CMLS), Vol. 64, No. 5. (14 March 2007), pp. 542-554.
    by D Babushok, E Ostertag, H Kazazian
    posted to molecular_evolution genome_evolution gene duplication alternative_splicing by stajich on 2008-09-03 19:26:42 as ** along with 1 person and 1 group jandot Berkeley Mycology
  • Alternative Splicing Gives Rise to Different Isoforms of the Neurospora crassa Tob55 Protein That Vary in Their Ability to Insert beta-Barrel Proteins Into the Outer Mitochondrial Membrane
    Genetics, Vol. 177, No. 1. (1 September 2007), pp. 137-149.
    by Suzanne C Hoppins, Nancy E Go, Astrid Klein, Simone Schmitt, Walter Neupert, Doron Rapaport, Frank E Nargang
    posted to alternative_splicing neurospora by stajich on 2007-09-21 18:23:28 as read
  • UNDERSTANDING ALTERNATIVE SPLICING: TOWARDS A CELLULAR CODE
    Nat Rev Mol Cell Biol, Vol. 6, No. 5. (May 2005), pp. 386-398.
    by Arianne J Matlin, Francis Clark, Christopher W Smith
    posted to alternative_splicing by srp33 on 2008-05-21 19:36:10 as ** along with 2 people raistrick raylim
  • Identification of differentially regulated splice variants and novel exons in glial brain tumors using exon expression arrays.
    Cancer Res, Vol. 67, No. 12. (15 June 2007), pp. 5635-5642.
    by PJ French, J Peeters, S Horsman, E Duijm, I Siccama, MJ van den Bent, TM Luider, JM Kros, P van der Spek, PA Sillevis Smitt
    posted to alternative_splicing brain_cancer by srp33 on 2008-05-17 16:29:33 as ** along with 1 person nicholso
  • Alternative splicing: an emerging topic in molecular and clinical oncology
    The Lancet Oncology, Vol. 8, No. 4. (April 2007), pp. 349-357.
    by Maria J Pajares, Teresa Ezponda, Raul Catena, Alfonso Calvo, Ruben Pio, Luis M Montuenga
    posted to alternative_splicing cancer_biology by srp33 on 2008-08-04 15:04:32 as ** along with 1 person cchand
  • A genomic view of alternative splicing.
    Nat Genet, Vol. 30, No. 1. (January 2002), pp. 13-19.
    by B Modrek, C Lee
    posted to alternative_splicing by srp33 on 2008-05-14 04:28:18 as ** along with 7 people and 3 groups inesdesantiago setar Cortel balicea dalloliogm mirzazadeh antonkratz Web2 splicing yeast
  • The connection between splicing and cancer
    J Cell Sci, Vol. 119, No. 13. (1 July 2006), pp. 2635-2641.
    by Anabella Srebrow, Alberto R Kornblihtt
    posted to alternative_splicing cancer_biology by srp33 on 2008-08-25 18:11:47 as ** along with 2 people and 2 groups dchughes frohike G4ID Genetics-of-Gambling
  • Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
    BMC Genomics, Vol. 7 (27 December 2006), 325.
    by Paul J Gardina, Tyson A Clark, Brian Shimada, Michelle K Staples, Qing Yang, James Veitch, Anthony Schweitzer, Tarif Awad, Charles Sugnet, Suzanne Dee, Christopher Davies, Alan Williams, Yaron Turpaz
    posted to alternative_splicing data_normalization microarray by srp33 on 2008-04-25 18:00:38 as ** along with 2 people jfr waszak
  • Aberrant and alternative splicing in cancer.
    Cancer Res, Vol. 64, No. 21. (1 November 2004), pp. 7647-7654.
    by JP Venables
    posted to alternative_splicing cancer_biology by srp33 on 2008-07-31 00:39:07 as ** along with 3 people and 1 group greg GloriaFu Cortel spliceml
  • How did alternative splicing evolve?
    Nat Rev Genet, Vol. 5, No. 10. (October 2004), pp. 773-782.
    by G Ast
    posted to alternative_splicing evolution by setar on 2005-04-28 13:12:56 as read along with 7 people and 2 groups greg GloriaFu macowell Cortel radek balicea grahamc spliceml BUiGEM
  • The multiassembly problem: reconstructing multiple transcript isoforms from EST fragment mixtures.
    Genome Res, Vol. 14, No. 3. (March 2004), pp. 426-441.
    by Y Xing, A Resch, C Lee
    posted to alternative_splicing splice_graph by setar on 2005-05-03 10:19:14 as read
  • Splicing graphs and EST assembly problem.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by S Heber, M Alekseyev, SH Sze, H Tang, PA Pevzner
    posted to alternative_splicing by setar on 2005-04-03 19:10:37 as read along with 3 people and 1 group greg Cortel nedwards spliceml
  • Integrating alternative splicing detection into gene prediction.
    BMC Bioinformatics, Vol. 6, No. 1. (10 February 2005)
    by S Foissac, T Schiex
    posted to alternative_splicing gene_prediction by setar on 2005-04-03 19:02:57 as read
  • ECgene: genome annotation for alternative splicing.
    Nucleic Acids Res, Vol. 33 Database Issue (1 January 2005)
    by P Kim, N Kim, Y Lee, B Kim, Y Shin, S Lee
    posted to alternative_splicing database by setar on 2005-04-03 19:04:55 as read
  • ExScript: an 'ex'-centric approach to the description of transcript diversity.
    Bioinformatics, Vol. 17, No. 6. (June 2001), pp. 485-486.
    by W Hide
    posted to alternative_splicing by setar on 2005-04-03 19:22:08 as read
  • Alternative pre-mRNA splicing: the logic of combinatorial control.
    Trends Biochem Sci, Vol. 25, No. 8. (August 2000), pp. 381-388.
    by CW Smith, J Valcárcel
    posted to alternative_splicing by setar on 2005-05-31 17:09:53 as read along with 1 person Cortel
  • The contribution of exon-skipping events on chromosome 22 to protein coding diversity.
    Genome Res, Vol. 11, No. 11. (November 2001), pp. 1848-1853.
    by WA Hide, VN Babenko, PAv van Heusden, C Seoighe, JF Kelso
    posted to alternative_splicing human by setar on 2005-05-10 16:33:40 as read
  • A Combinatorial Code for Splicing Silencing: UAGG and GGGG Motifs.
    PLoS Biol, Vol. 3, No. 5. (19 April 2005)
    by Kyoungha Han, Gene Yeo, Ping An, Christopher BB Burge, Paula JJ Grabowski
    posted to alternative_splicing experimental by setar on 2005-05-03 10:04:52 as read along with 1 person wenhan
  • Gene and alternative splicing annotation with AIR.
    Genome Res, Vol. 15, No. 1. (January 2005), pp. 54-66.
    by L Florea, VD Di Francesco, J Miller, R Turner, A Yao, M Harris, B Walenz, C Mobarry, GV Merkulov, R Charlab, I Dew, Z Deng, S Istrail, P Li, G Sutton
    posted to alternative_splicing annotation cross_species gene_prediction by setar on 2005-04-03 19:18:12 as read
  • The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome.
    Nucleic Acids Res, Vol. 32, No. 13. (2004), pp. 3977-3983.
    by J Leipzig, P Pevzner, S Heber
    posted to alternative_splicing database by setar on 2005-04-03 19:06:59 as read along with 6 people and 1 group greg Cortel radek dchughes nedwards antonkratz spliceml
  • Split Genes and RNA Splicing (Nobel Lecture)
    Angewandte Chemie International Edition in English, Vol. 33, No. 12. (1994), pp. 1229-1240.
    by Phillip A Sharp
    posted to alternative_splicing spliceosome splicing split_genes by raylim on 2007-03-27 00:50:55 as **
  • Regulation of Fibronectin EDA Exon Alternative Splicing: Possible Role of RNA Secondary Structure for Enhancer Display
    Mol. Cell. Biol., Vol. 19, No. 4. (1 April 1999), pp. 2657-2671.
    by Andres F Muro, Massimo Caputi, Rajalakshmi Pariyarath, Franco Pagani, Emanuele Buratti, Francisco E Baralle
    posted to alternative_splicing enhancer_display exon secondary_structure by raylim on 2007-04-28 06:37:00 as **
  • Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes
    Nucleic Acids Research, Vol. 35, No. 2. (January 2007), pp. 371-389.
    by Singh, N Natalia, Singh, N Ravindra, Androphy, J Elliot
    posted to alternative_splicing rna secondary_structure by raylim on 2007-03-20 00:18:43 as ***
  • Genome-wide detection of alternative splicing in expressed sequences of human genes.
    Nucleic Acids Res, Vol. 29, No. 13. (1 July 2001), pp. 2850-2859.
    by B Modrek, A Resch, C Grasso, C Lee
    posted to alternative_splicing ests by raylim on 2007-03-27 03:03:35 as ** along with 4 people and 1 group dchughes kaspermunch frohike antonkratz Bioinformatics
  • Computational comparative analyses of alternative splicing regulation using full-length cDNA of various eukaryotes.
    RNA, Vol. 10, No. 7. (July 2004), pp. 1005-1018.
    by H Itoh, T Washio, M Tomita
    posted to alternative_splicing cdna regulation by raylim on 2007-03-22 09:14:28 as ** along with 2 people and 1 group kaspermunch antonkratz Bioinformatics
  • Murine Leukemia Virus Regulates Alternative Splicing through Sequences Upstream of the 5middle dot Splice Site
    J. Biol. Chem., Vol. 281, No. 49. (8 December 2006), pp. 37381-37390.
    by Janine Kraunus, Daniela Zychlinski, Tilman Heise, Melanie Galla, Jens Bohne, Christopher Baum
    posted to alternative_splicing leukemia murine rna secondary_structure splice_sites virus by raylim on 2007-03-20 00:19:47 as ***
  • notes Genome-wide survey of allele-specific splicing in humans
    BMC Genomics, Vol. 9 (02 June 2008), 265.
    by Victoria Nembaware, Bukiwe Lupindo, Katherine Schouest, Charles Spillane, Konrad Scheffler, Cathal Seoighe
    posted to alternative_splicing by ramensky on 2008-06-16 21:28:07 as ** along with 1 person jyuh
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