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Group: FAB-lab - with tag bayesian [33 articles]

Recent papers posted by members of the FAB-lab group with tag bayesian
  • Mixture models in phylogenetic inference
    (28 April 2008)
    by Mark Pagel
    posted to substitution-models rates phylogeny monte-carlo methods markov-chains bayesian by rvosa to the group FAB-lab on 2008-08-18 02:27:00 as **
  • Modelling Heterotachy in Phylogenetic Inference by Reversible-Jump Markov chain Monte Carlo
    Philosophical Transactions of the Royal Society of London Series B: Biological Sciences, Vol. In review
    by Mark Pagel, Andrew Meade
    posted to substitution-models rates monte-carlo methods markov-chains bayesian by rvosa to the group FAB-lab on 2008-08-18 01:50:23 as **
  • Bayesian Analysis of Correlated Evolution of Discrete Characters by Reversible-Jump Markov Chain Monte Carlo.
    The American naturalist, Vol. 167, No. 6. (9 May 2006)
    by Mark Pagel, Andrew Meade
    posted to statistics monte-carlo methods markov-chains evolution comparative characters bayesian by rvosa to the group FAB-lab on 2008-08-09 09:41:27 as **
  • Understanding the Metropolis-Hastings Algorithm
    The American Statistician, Vol. 49, No. 4. (1995), pp. 327-335.
    by Siddhartha Chib, Edward Greenberg
  • Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene loci and calibration points, with application to a radiation of cute-looking mouse lemur species
    Systematic Biology, Vol. 52, No. 5. (2003), pp. 705-716.
    by ZH Yang, AD Yoder
  • notes Bayesian Phylogenetic Inference Using DNA Sequences: A Markov Chain Monte Carlo Method
    Molecular Biology and Evolution, Vol. 14, No. 7. (1997), pp. 717-724.
    by Ziheng Yang, Bruce Rannala
  • notes Likelihood Analysis of Phylogenetic Networks Using Directed Graphical Models
    Molecular Biology and Evolution, Vol. 17, No. 6. (2000), pp. 875-881.
    by Korbinian Strimmer, Vincent Moulton
  • Bayesian supertrees
    (2004)
    by F Ronquist, John P Huelsenbeck, T Britton
    edited by Olaf
    posted to bayesian bibtex-import methods supertree by rvosa to the group FAB-lab on 2008-02-06 23:58:23 as **
  • Are Ichthyosporea animals or fungi? Bayesian phylogenetic analysis of elongation factor 1 alpha of Ichthyophonus irregularis
    Molecular Phylogenetics and Evolution, Vol. 29, No. 3. (2003), pp. 550-562.
    by MA Ragan, CA Murphy, TG Rand
    posted to amino-acid animals bayesian bibtex-import fungi parsimony phenetics phylogeny rna by rvosa to the group FAB-lab on 2008-02-06 23:58:22 as **
  • notes Resolution of the early Placental mammal radiation using Bayesian phylogenetics
    Science, Vol. 294 (2001), pp. 2348-2351.
    by WJ Murphy, E Eizirik, SJ O'Brien, O Madsen, M Scally, CJ Douady, E Teeling, OA Ryder, MJ Stanhope, WW De Jong, MS Springer
    posted to bayesian bibtex-import markov-chains monte-carlo phylogeny radiation by rvosa to the group FAB-lab on 2008-02-06 23:58:18 as **
  • Performance-based selection of likelihood models for phylogeny estimation
    Systematic Biology, Vol. 52, No. 5. (2003), pp. 674-683.
    by V Minin, Z Abdo, P Joyce, J Sullivan
    posted to bayesian bibtex-import likelihood phylogeny ratio-test substitution-models by rvosa to the group FAB-lab on 2008-02-06 23:58:17 as **
  • notes Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods
    Biometrics, Vol. 55 (1999), pp. 1-12.
    by Bob Mau, Michael A Newton, Bret Larget
    posted to bayesian bibtex-import evolution markov-chains methods monte-carlo phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:17 as **
  • notes Bayesian and maximum likelihood phylogenetic analyses of protein sequence data under relative branch-length differences and model violation
    BMC Evolutionary Biology, Vol. 5, No. 8. (2005)
    by Jessica C Mar, Timothy J Harlow, Mark A Ragan
    posted to bayesian bibtex-import likelihood phylogeny protein substitution-models by rvosa to the group FAB-lab on 2008-02-06 23:58:16 as **
  • notes The phylogeny of the subgroups within the melanogaster species group: Likelihood tests on COI and COII sequences and a Bayesian estimate of phylogeny
    Molecular Phylogenetics and Evolution, Vol. 37, No. 1. (2004), pp. 15-24.
    by Rebecca L Lewis, Andrew T Beckenbach, Arne
    posted to bayesian bibtex-import likelihood markov-chains mitochondrial monte-carlo ratio-test by rvosa to the group FAB-lab on 2008-02-06 23:58:16 as **
  • notes Phylogenetic systematics turns over a new leaf
    Trends in Ecology and Evolution, Vol. 16, No. 1. (2001), pp. 30-37.
    by Paul O Lewis
    posted to bayesian bibtex-import markov-chains methods monte-carlo by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as **
  • notes Markov Chain Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees
    Molecular Biology and Evolution, Vol. 16, No. 6. (1999), pp. 750-759.
    by Bret Larget, Donald L Simon
    posted to algorithms bayesian bibtex-import markov-chains methods monte-carlo phylogeny by rvosa to the group FAB-lab on 2008-02-06 23:58:15 as **
  • Type ISTS markers are more informative than cytochrome b in phylogenetic reconstruction of the Mustelidae (Mammalia : Carnivora)
    Systematic Biology, Vol. 52, No. 5. (2003), pp. 571-593.
    by KP Koepfli, RK Wayne
  • Phylogenetics of advanced snakes (Caenophidia) based on four mitochondrial genes
    Systematic Biology, Vol. 52, No. 4. (2003), pp. 439-459.
    by CMR Kelly, NP Barker, MH Villet
  • Molecular systematics and adaptive radiation of Hawaii's endemic damselfly genus Megalagrion (Odonata : Coenagrionidae)
    Systematic Biology, Vol. 52, No. 1. (2003), pp. 89-109.
    by S Jordan, C Simon, D Polhemus
  • notes A Bayesian framework for the analysis of cospeciation
    Evolution, Vol. 54, No. 2. (2000), pp. 352-364.
    by John P Huelsenbeck, Bruce Rannala, Bret Larget
  • Monte Carlo sampling methods using Markov chains and their applications
    Biometrika, Vol. 57 (1970), pp. 97-109.
    by WK Hastings
    posted to bayesian bibtex-import markov-chains monte-carlo by rvosa to the group FAB-lab on 2008-02-06 23:58:11 as **
  • Molecular and morphological phylogenies of Ruminantia and the alternative position of the Moschidae
    Systematic Biology, Vol. 52, No. 2. (2003), pp. 206-228.
    by A Hassanin, EJP Douzery
  • True and false gharials: A nuclear gene phylogeny of Crocodylia
    Systematic Biology, Vol. 52, No. 3. (2003), pp. 386-402.
  • Reliability of Bayesian posterior probabilities and bootstrap frequencies in phylogenetics
    Systematic Biology, Vol. 52, No. 5. (2003), pp. 665-673.
  • Identifying conflicting signal in a multigene analysis reveals a highly resolved tree: The phylogeny of Rodentia (Mammalia)
    Systematic Biology, Vol. 52, No. 5. (2003), pp. 604-617.
    by RW Debry
  • Phylogeny of eusocial Lasioglossum reveals multiple losses of eusociality within a primitively eusocial clade of bees (Hymenoptera : Halictidae)
    Systematic Biology, Vol. 52, No. 1. (2003), pp. 23-36.
    by BN Danforth, L Conway, SQ Ji
  • Comparing bootstrap and posterior probability values in the four-taxon case
    Systematic Biology, Vol. 52, No. 4. (2003), pp. 477-487.
    by MP Cummings, SA Handley, DS Myers, DL Reed, A Rokas, K Winka
    posted to bayesian bibtex-import likelihood methods phylogeny simulation topology by rvosa to the group FAB-lab on 2008-02-06 23:58:06 as **
  • Phylogenetic relationships among calyptraeid gastropods and their implications for the biogeography of marine speciation
    Systematic Biology, Vol. 52, No. 5. (2003), pp. 618-640.
    by R Collin
    posted to animals bayesian bibtex-import biogeography invertebrates phylogeny speciation by rvosa to the group FAB-lab on 2008-02-06 23:58:05 as **
  • Phylogenetic MCMC algorithms are misleading on mixtures of trees.
    Science, Vol. 309, No. 5744. (30 September 2005), pp. 2207-2209.
    by E Mossel, E Vigoda
    posted to algorithm bayesian inference likelihood phylogeny by rvosa to the group FAB-lab on 2005-10-13 22:44:38 as **
  • MrBayes 3: Bayesian phylogenetic inference under mixed models.
    Bioinformatics, Vol. 19, No. 12. (12 August 2003), pp. 1572-1574.
  • MRBAYES: Bayesian inference of phylogenetic trees.
    Bioinformatics, Vol. 17, No. 8. (August 2001), pp. 754-755.
  • Maximum-Likelihood Estimation of Population Divergence Times and Population Phylogeny in Models without Mutation
    Evolution, Vol. 52, No. 3. (1998), pp. 669-677.
    by Rasmus Nielsen, Joanna L Mountain, John P Huelsenbeck, Montgomery Slatkin
  • Bayesian phylogenetic model selection using reversible jump Markov chain Monte Carlo.
    Mol Biol Evol, Vol. 21, No. 6. (June 2004), pp. 1123-1133.
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